Wall clock time and date at job start Tue Mar 31 2020 07:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38123 * 120.02973 * 2 1 4 4 C 1.38372 * 120.05968 * 180.02562 * 3 2 1 5 5 Cl 1.73596 * 119.94270 * 180.02562 * 4 3 2 6 6 C 1.38418 * 120.11853 * 0.02562 * 4 3 2 7 7 C 1.38078 * 120.05801 * 359.70318 * 6 4 3 8 8 C 1.38869 * 120.03161 * 180.02562 * 2 1 3 9 9 N 1.39877 * 120.06009 * 359.95137 * 8 2 1 10 10 C 1.35842 * 126.70395 * 264.98215 * 9 8 2 11 11 N 1.30771 * 108.78597 * 180.24657 * 10 9 8 12 12 C 1.34405 * 109.99418 * 359.61851 * 11 10 9 13 13 O 1.21724 * 125.84724 * 180.13025 * 12 11 10 14 14 N 1.34972 * 108.29621 * 0.38005 * 12 11 10 15 15 C 1.46507 * 126.83293 * 179.80055 * 14 12 11 16 16 C 1.50694 * 109.46839 * 274.97140 * 15 14 12 17 17 H 1.07995 * 120.00456 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99747 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99855 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99669 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47284 * 89.99973 * 20 18 16 22 22 H 1.48501 * 109.46895 * 209.99572 * 20 18 16 23 23 H 1.48493 * 109.47544 * 329.99744 * 20 18 16 24 24 H 1.09003 * 109.46585 * 269.97429 * 1 2 3 25 25 H 1.08994 * 109.47137 * 29.97232 * 1 2 3 26 26 H 1.08997 * 109.47429 * 149.97760 * 1 2 3 27 27 H 1.07994 * 119.97504 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.96634 * 179.97438 * 6 4 3 29 29 H 1.07995 * 120.02833 * 180.29667 * 7 6 4 30 30 H 1.08002 * 125.60126 * 359.97228 * 10 9 8 31 31 H 1.08999 * 109.47055 * 34.97395 * 15 14 12 32 32 H 1.08995 * 109.46817 * 154.97279 * 15 14 12 33 33 H 0.97004 * 119.99717 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1958 0.0000 4 6 3.5819 1.1965 -0.0005 5 17 4.4476 2.7012 0.0001 6 6 4.2771 -0.0004 -0.0016 7 6 3.5911 -1.1987 0.0040 8 6 2.2020 -1.2023 -0.0005 9 7 1.5046 -2.4147 -0.0001 10 6 1.1831 -3.1660 1.0851 11 7 0.5365 -4.2297 0.6843 12 6 0.4052 -4.2110 -0.6532 13 8 -0.1504 -5.0589 -1.3269 14 7 1.0000 -3.0936 -1.1217 15 6 1.0990 -2.6722 -2.5214 16 6 2.2936 -3.3316 -3.1610 17 1 2.9165 -3.9981 -2.5830 18 6 2.5914 -3.0839 -4.4843 19 7 1.8326 -2.2726 -5.1883 20 14 4.0718 -3.9017 -5.2773 21 1 3.6616 -5.1998 -5.8705 22 1 4.6130 -3.0198 -6.3425 23 1 5.1178 -4.1358 -4.2496 24 1 -0.3632 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6583 2.1311 0.0004 28 1 5.3571 0.0030 -0.0024 29 1 4.1340 -2.1322 0.0080 30 1 1.4259 -2.9266 2.1099 31 1 0.1941 -2.9648 -3.0538 32 1 1.2137 -1.5893 -2.5675 33 1 2.0424 -2.0980 -6.1192 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414157019.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:10 Heat of formation + Delta-G solvation = 84.125593 kcal Electronic energy + Delta-G solvation = -21106.282888 eV Core-core repulsion = 17774.966041 eV Total energy + Delta-G solvation = -3331.316848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.79374 -39.55045 -36.88333 -36.28068 -34.15473 -33.23620 -32.72765 -31.91868 -29.18455 -27.45645 -26.93227 -23.76462 -23.40504 -22.13579 -21.18630 -20.32069 -18.04796 -16.97773 -16.53850 -16.25617 -15.71983 -15.07917 -14.96252 -14.51362 -14.39738 -14.00535 -13.76235 -13.48865 -12.96557 -12.83669 -12.53034 -12.34079 -11.99602 -11.75786 -11.51735 -11.41100 -11.22041 -11.01272 -10.90392 -10.59077 -10.39146 -10.19026 -9.29167 -9.16538 -9.07353 -8.74626 -8.62924 -7.64398 -6.26964 -4.34050 0.65953 1.04546 1.81184 1.88189 2.01799 3.20553 3.26209 3.27266 3.29516 4.11924 4.24978 4.33369 4.50027 4.51650 4.60894 4.89501 5.07691 5.08340 5.25296 5.40307 5.49649 5.62121 5.67149 5.85997 5.96381 6.02553 6.15948 6.21809 6.40735 6.68881 6.93248 7.23852 7.59351 7.75008 7.86804 8.55643 8.68108 9.05702 9.32983 10.80736 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.006791 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.797491 B = 4122.058777 C = 5690.065440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.045 4.045 3 C -0.108 4.108 4 C -0.013 4.013 5 Cl -0.067 7.067 6 C -0.110 4.110 7 C -0.065 4.065 8 C 0.139 3.861 9 N -0.357 5.357 10 C 0.358 3.642 11 N -0.581 5.581 12 C 0.626 3.374 13 O -0.545 6.545 14 N -0.408 5.408 15 C 0.272 3.728 16 C -0.537 4.537 17 H 0.061 0.939 18 C 0.068 3.932 19 N -0.890 5.890 20 Si 0.905 3.095 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.273 1.273 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.224 0.776 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.405 12.219 14.096 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.047 4.047 3 C -0.127 4.127 4 C -0.040 4.040 5 Cl -0.038 7.038 6 C -0.129 4.129 7 C -0.085 4.085 8 C 0.049 3.951 9 N -0.153 5.153 10 C 0.065 3.935 11 N -0.329 5.329 12 C 0.324 3.676 13 O -0.417 6.417 14 N -0.234 5.234 15 C 0.154 3.846 16 C -0.576 4.576 17 H 0.080 0.920 18 C -0.136 4.136 19 N -0.528 5.528 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.198 1.198 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.159 0.841 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.240 0.760 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.757 11.302 13.497 18.000 hybrid contribution 1.337 0.390 -1.142 1.801 sum 5.094 11.692 12.355 17.756 Atomic orbital electron populations 1.20849 0.89668 1.04195 1.02906 1.20074 0.97088 0.91119 0.96434 1.20787 0.91793 0.98185 1.01969 1.21016 0.92473 0.87380 1.03157 1.98378 1.76733 1.31889 1.96757 1.20914 1.00810 0.89832 1.01349 1.21343 0.92516 0.98893 0.95768 1.17096 0.89893 0.82131 1.05999 1.44637 1.50488 1.18107 1.02060 1.25778 0.89521 0.85532 0.92689 1.71709 1.26722 1.22014 1.12477 1.17958 0.82203 0.81637 0.85763 1.90916 1.48755 1.39507 1.62527 1.50611 1.51555 1.20244 1.00970 1.19628 0.99463 0.96483 0.69011 1.21313 1.11222 1.28652 0.96384 0.92035 1.24904 0.97207 0.94889 0.96593 1.69911 1.38293 1.35287 1.09307 0.86384 0.81993 0.79475 0.78999 1.20139 1.20880 1.19787 0.90300 0.90528 0.90698 0.84099 0.84028 0.83980 0.75975 0.91997 0.94114 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 9.77 36.01 0.35 -1.03 16 2 C -0.04 -0.56 5.90 -104.43 -0.62 -1.17 16 3 C -0.11 -1.18 9.48 -39.57 -0.38 -1.56 16 4 C -0.01 -0.15 6.32 -39.47 -0.25 -0.40 16 5 Cl -0.07 -0.67 28.95 -51.86 -1.50 -2.17 16 6 C -0.11 -1.23 9.82 -39.57 -0.39 -1.62 16 7 C -0.06 -0.84 9.97 -39.39 -0.39 -1.23 16 8 C 0.14 1.97 5.41 -83.70 -0.45 1.52 16 9 N -0.36 -5.93 2.63 -11.61 -0.03 -5.96 16 10 C 0.36 5.13 12.60 -89.41 -1.13 4.00 16 11 N -0.58 -11.52 11.22 -17.55 -0.20 -11.72 16 12 C 0.63 15.26 8.96 -87.08 -0.78 14.48 16 13 O -0.54 -15.69 17.93 5.17 0.09 -15.59 16 14 N -0.41 -9.11 3.38 -66.43 -0.22 -9.34 16 15 C 0.27 6.94 5.81 -5.19 -0.03 6.91 16 16 C -0.54 -14.91 9.39 -34.44 -0.32 -15.23 16 17 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 18 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 19 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 20 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 26 H 0.07 1.11 7.23 -51.93 -0.38 0.74 16 27 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.22 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.06 1.76 8.14 -51.93 -0.42 1.34 16 32 H 0.04 1.04 7.84 -51.93 -0.41 0.63 16 33 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 314.93 15.07 4.75 4.75 Total: -1.00 -34.94 314.93 -9.16 -44.10 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -3.28 Total: -2.33 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -4.48 Total: 6.45 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.28 Total: -51.60 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.09 Total: -15.59 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.94 -9.16 -44.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414157019.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.229 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds