Wall clock time and date at job start Tue Mar 31 2020 07:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38123 * 120.02973 * 2 1 4 4 C 1.38372 * 120.05968 * 180.02562 * 3 2 1 5 5 Cl 1.73596 * 119.94270 * 180.02562 * 4 3 2 6 6 C 1.38418 * 120.11853 * 0.02562 * 4 3 2 7 7 C 1.38078 * 120.05801 * 359.70318 * 6 4 3 8 8 C 1.38869 * 120.03161 * 180.02562 * 2 1 3 9 9 N 1.39877 * 120.06009 * 359.95137 * 8 2 1 10 10 C 1.35842 * 126.70395 * 264.98215 * 9 8 2 11 11 N 1.30771 * 108.78597 * 180.24657 * 10 9 8 12 12 C 1.34405 * 109.99418 * 359.61851 * 11 10 9 13 13 O 1.21724 * 125.84724 * 180.13025 * 12 11 10 14 14 N 1.34972 * 108.29621 * 0.38005 * 12 11 10 15 15 C 1.46507 * 126.83293 * 179.80055 * 14 12 11 16 16 C 1.50694 * 109.46839 * 274.97140 * 15 14 12 17 17 H 1.07995 * 120.00456 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99747 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99855 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99669 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47284 * 89.99973 * 20 18 16 22 22 H 1.48501 * 109.46895 * 209.99572 * 20 18 16 23 23 H 1.48493 * 109.47544 * 329.99744 * 20 18 16 24 24 H 1.09003 * 109.46585 * 269.97429 * 1 2 3 25 25 H 1.08994 * 109.47137 * 29.97232 * 1 2 3 26 26 H 1.08997 * 109.47429 * 149.97760 * 1 2 3 27 27 H 1.07994 * 119.97504 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.96634 * 179.97438 * 6 4 3 29 29 H 1.07995 * 120.02833 * 180.29667 * 7 6 4 30 30 H 1.08002 * 125.60126 * 359.97228 * 10 9 8 31 31 H 1.08999 * 109.47055 * 34.97395 * 15 14 12 32 32 H 1.08995 * 109.46817 * 154.97279 * 15 14 12 33 33 H 0.97004 * 119.99717 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1958 0.0000 4 6 3.5819 1.1965 -0.0005 5 17 4.4476 2.7012 0.0001 6 6 4.2771 -0.0004 -0.0016 7 6 3.5911 -1.1987 0.0040 8 6 2.2020 -1.2023 -0.0005 9 7 1.5046 -2.4147 -0.0001 10 6 1.1831 -3.1660 1.0851 11 7 0.5365 -4.2297 0.6843 12 6 0.4052 -4.2110 -0.6532 13 8 -0.1504 -5.0589 -1.3269 14 7 1.0000 -3.0936 -1.1217 15 6 1.0990 -2.6722 -2.5214 16 6 2.2936 -3.3316 -3.1610 17 1 2.9165 -3.9981 -2.5830 18 6 2.5914 -3.0839 -4.4843 19 7 1.8326 -2.2726 -5.1883 20 14 4.0718 -3.9017 -5.2773 21 1 3.6616 -5.1998 -5.8705 22 1 4.6130 -3.0198 -6.3425 23 1 5.1178 -4.1358 -4.2496 24 1 -0.3632 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6583 2.1311 0.0004 28 1 5.3571 0.0030 -0.0024 29 1 4.1340 -2.1322 0.0080 30 1 1.4259 -2.9266 2.1099 31 1 0.1941 -2.9648 -3.0538 32 1 1.2137 -1.5893 -2.5675 33 1 2.0424 -2.0980 -6.1192 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414157019.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:09 Heat of formation + Delta-G solvation = 62.266840 kcal Electronic energy + Delta-G solvation = -21107.230755 eV Core-core repulsion = 17774.966041 eV Total energy + Delta-G solvation = -3332.264714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.31432 -40.60280 -38.30484 -37.53431 -36.04901 -34.61176 -33.88910 -33.62182 -30.42164 -29.29528 -27.97754 -25.62442 -24.69543 -23.20491 -22.55586 -21.89116 -19.34038 -18.94194 -17.68479 -17.58699 -17.20444 -16.84524 -16.48121 -16.15126 -15.64399 -15.30032 -14.95586 -14.56777 -14.40357 -13.97043 -13.82490 -13.73941 -13.64561 -13.23462 -13.02169 -12.80064 -12.51326 -12.48676 -12.33576 -12.18285 -12.08249 -11.89597 -11.01252 -10.93914 -10.76487 -10.01944 -9.78688 -9.41676 -8.39001 -6.55534 -0.40707 0.12485 0.45596 0.58393 1.02172 1.31221 1.35283 1.44293 2.26118 2.30669 2.43467 2.75328 2.92743 3.45889 3.58191 3.65138 3.99458 4.14151 4.15626 4.35134 4.38467 4.52245 4.64259 4.74133 4.75203 4.91237 5.05448 5.09346 5.09810 5.24564 5.31968 5.46849 5.51961 5.75156 6.21384 6.50132 6.99811 7.12070 7.26611 8.68362 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.006791 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.797491 B = 4122.058777 C = 5690.065440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.045 4.045 3 C -0.104 4.104 4 C -0.011 4.011 5 Cl -0.053 7.053 6 C -0.107 4.107 7 C -0.068 4.068 8 C 0.105 3.895 9 N -0.343 5.343 10 C 0.391 3.609 11 N -0.607 5.607 12 C 0.610 3.390 13 O -0.610 6.610 14 N -0.423 5.423 15 C 0.294 3.706 16 C -0.555 4.555 17 H 0.048 0.952 18 C 0.023 3.977 19 N -0.916 5.916 20 Si 0.968 3.032 21 H -0.280 1.280 22 H -0.267 1.267 23 H -0.263 1.263 24 H 0.107 0.893 25 H 0.090 0.910 26 H 0.035 0.965 27 H 0.166 0.834 28 H 0.163 0.837 29 H 0.141 0.859 30 H 0.298 0.702 31 H 0.018 0.982 32 H 0.039 0.961 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.537 14.388 15.775 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.047 4.047 3 C -0.123 4.123 4 C -0.038 4.038 5 Cl -0.023 7.023 6 C -0.126 4.126 7 C -0.089 4.089 8 C 0.016 3.984 9 N -0.137 5.137 10 C 0.101 3.899 11 N -0.357 5.357 12 C 0.308 3.692 13 O -0.488 6.488 14 N -0.245 5.245 15 C 0.175 3.825 16 C -0.593 4.593 17 H 0.067 0.933 18 C -0.178 4.178 19 N -0.555 5.555 20 Si 0.791 3.209 21 H -0.205 1.205 22 H -0.192 1.192 23 H -0.187 1.187 24 H 0.125 0.875 25 H 0.109 0.891 26 H 0.054 0.946 27 H 0.183 0.817 28 H 0.181 0.819 29 H 0.159 0.841 30 H 0.312 0.688 31 H 0.036 0.964 32 H 0.057 0.943 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.925 13.543 15.220 21.217 hybrid contribution 0.729 -0.075 -1.563 1.726 sum 6.654 13.468 13.657 20.302 Atomic orbital electron populations 1.20861 0.89247 1.02916 1.04355 1.20177 0.97473 0.91009 0.96059 1.21023 0.91920 0.98470 1.00838 1.21172 0.92755 0.87948 1.01949 1.98392 1.76430 1.30939 1.96578 1.21132 1.01888 0.89187 1.00409 1.21386 0.91939 0.99672 0.95886 1.17423 0.90481 0.81439 1.09049 1.44879 1.49856 1.18679 1.00272 1.27203 0.85642 0.82758 0.94295 1.71670 1.29618 1.24852 1.09547 1.18383 0.82134 0.81466 0.87203 1.90822 1.51663 1.42013 1.64294 1.50201 1.51781 1.20659 1.01890 1.18982 0.96864 0.95750 0.70885 1.21453 1.11744 1.28992 0.97113 0.93333 1.25742 0.99979 0.95234 0.96874 1.70000 1.39659 1.36025 1.09771 0.85411 0.78711 0.78320 0.78436 1.20540 1.19171 1.18725 0.87470 0.89078 0.94619 0.81689 0.81909 0.84085 0.68763 0.96396 0.94340 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 9.77 71.24 0.70 -1.82 16 2 C -0.04 -1.02 5.90 -19.74 -0.12 -1.13 16 3 C -0.10 -1.94 9.48 22.27 0.21 -1.73 16 4 C -0.01 -0.21 6.32 22.34 0.14 -0.07 16 5 Cl -0.05 -0.89 28.95 -2.72 -0.08 -0.97 16 6 C -0.11 -2.09 9.82 22.27 0.22 -1.87 16 7 C -0.07 -1.63 9.97 22.39 0.22 -1.40 16 8 C 0.11 2.82 5.41 38.17 0.21 3.02 16 9 N -0.34 -11.13 2.63 -190.65 -0.50 -11.63 16 10 C 0.39 10.36 12.60 179.93 2.27 12.63 16 11 N -0.61 -24.11 11.22 -327.85 -3.68 -27.79 16 12 C 0.61 31.14 8.96 179.11 1.61 32.74 16 13 O -0.61 -37.58 17.93 -4.43 -0.08 -37.66 16 14 N -0.42 -19.62 3.38 -482.18 -1.63 -21.24 16 15 C 0.29 15.85 5.81 85.63 0.50 16.34 16 16 C -0.55 -31.78 9.39 25.60 0.24 -31.54 16 17 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 18 C 0.02 1.28 5.46 84.66 0.46 1.75 16 19 N -0.92 -52.97 13.29 21.45 0.28 -52.68 16 20 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.09 1.67 8.09 -2.39 -0.02 1.65 16 26 H 0.03 1.06 7.23 -2.39 -0.02 1.04 16 27 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 28 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 30 H 0.30 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 2.05 7.84 -2.39 -0.02 2.03 16 33 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -81.61 314.93 4.13 -77.47 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.14 Total: 1.66 kcal Atomic # 6 Polarization: 20.26 SS G_CDS: 6.65 Total: 26.91 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -5.53 Total: -113.35 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.08 Total: -37.66 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -81.61 4.13 -77.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414157019.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.738 kcal (2) G-P(sol) polarization free energy of solvation -81.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds