Wall clock time and date at job start Tue Mar 31 2020 07:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46883 * 283.47946 * 3 2 1 5 5 N 1.46502 * 109.46805 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00013 * 267.15034 * 5 4 3 7 7 C 1.50697 * 109.47024 * 262.80660 * 6 5 4 8 8 H 1.08001 * 120.00325 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99982 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00076 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99919 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47460 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47183 * 119.99838 * 11 9 7 14 14 H 1.48506 * 109.46907 * 239.99642 * 11 9 7 15 15 C 1.34780 * 120.00140 * 87.15080 * 5 4 3 16 16 O 1.21526 * 119.99501 * 3.62944 * 15 5 4 17 17 C 1.48077 * 120.00195 * 183.63072 * 15 5 4 18 18 N 1.32778 * 119.74038 * 354.01019 * 17 15 5 19 19 C 1.31461 * 121.65778 * 179.97438 * 18 17 15 20 20 C 1.38645 * 120.94038 * 0.02562 * 19 18 17 21 21 C 1.38509 * 119.37391 * 0.27024 * 20 19 18 22 22 C 1.38804 * 118.48109 * 359.44331 * 21 20 19 23 23 Cl 1.73598 * 120.49355 * 180.25848 * 22 21 20 24 24 H 1.08993 * 109.46810 * 163.48203 * 3 2 1 25 25 H 1.08998 * 109.47077 * 43.47685 * 3 2 1 26 26 H 1.09001 * 109.47068 * 60.00196 * 4 3 2 27 27 H 1.09003 * 109.47491 * 299.99720 * 4 3 2 28 28 H 1.08995 * 109.47053 * 22.81170 * 6 5 4 29 29 H 1.09001 * 109.47072 * 142.80767 * 6 5 4 30 30 H 0.96993 * 120.00129 * 180.02562 * 10 9 7 31 31 H 1.07999 * 119.52702 * 180.02562 * 19 18 17 32 32 H 1.08002 * 120.31071 * 179.97438 * 20 19 18 33 33 H 1.08000 * 120.75949 * 179.72604 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.3354 1.4028 5 7 4.5831 -0.3353 1.4026 6 6 5.3157 -1.5823 1.1687 7 6 5.7211 -2.1822 2.4903 8 1 5.4589 -1.6847 3.4124 9 6 6.4267 -3.3663 2.5224 10 7 6.7464 -3.9720 1.3997 11 14 6.9286 -4.1103 4.1607 12 1 6.4520 -3.2407 5.2661 13 1 6.3251 -5.4603 4.2969 14 1 8.4082 -4.2211 4.2214 15 6 5.2570 0.8119 1.6177 16 8 4.6512 1.8330 1.8770 17 6 6.7356 0.8282 1.5379 18 7 7.3989 -0.3101 1.3729 19 6 8.7110 -0.3392 1.2967 20 6 9.4564 0.8263 1.3871 21 6 8.8064 2.0363 1.5658 22 6 7.4202 2.0388 1.6367 23 17 6.5519 3.5265 1.8531 24 1 2.9708 0.9860 -0.2922 25 1 2.9717 -0.7449 -0.7071 26 1 2.7552 -1.3208 1.6950 27 1 2.7545 0.4102 2.1100 28 1 4.6770 -2.2836 0.6319 29 1 6.2062 -1.3747 0.5755 30 1 7.2424 -4.8051 1.4223 31 1 9.2154 -1.2846 1.1617 32 1 10.5339 0.7905 1.3236 33 1 9.3651 2.9572 1.6435 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429905764.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:31 Heat of formation + Delta-G solvation = 51.160009 kcal Electronic energy + Delta-G solvation = -20963.202561 eV Core-core repulsion = 17630.456219 eV Total energy + Delta-G solvation = -3332.746342 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.30150 -38.55724 -36.64095 -36.25730 -35.17374 -32.91900 -32.28708 -31.18566 -30.42748 -27.08954 -25.12443 -23.57436 -22.97867 -22.54735 -19.38892 -17.51880 -16.93352 -16.72078 -16.31900 -16.00442 -15.22599 -14.94855 -14.63884 -14.52987 -14.18848 -13.71705 -13.28402 -13.21854 -12.82959 -12.38872 -12.31088 -12.15905 -12.01025 -11.68310 -11.61752 -11.37771 -11.01287 -10.94187 -10.75501 -10.60925 -10.16564 -9.70856 -9.56986 -9.26327 -8.68830 -8.64276 -8.18902 -7.74311 -6.06853 -4.05804 0.90185 1.37276 2.35766 2.85993 2.96209 3.23342 3.26481 3.33344 3.38731 3.58941 4.18247 4.33534 4.40164 4.71333 4.92904 4.99752 5.12714 5.27868 5.29825 5.35682 5.56692 5.60510 5.68516 5.95563 6.11392 6.15795 6.26228 6.66750 6.71666 7.45658 7.68135 7.72398 7.85688 8.13991 8.23669 8.24959 8.79859 8.97329 9.54638 11.01094 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.009364 B = 0.008597 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.377926 B = 3256.065344 C = 5647.349406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.222 3.778 3 C -0.046 4.046 4 C 0.124 3.876 5 N -0.576 5.576 6 C 0.223 3.777 7 C -0.500 4.500 8 H 0.052 0.948 9 C 0.069 3.931 10 N -0.889 5.889 11 Si 0.883 3.117 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.563 3.437 16 O -0.544 6.544 17 C 0.091 3.909 18 N -0.364 5.364 19 C 0.094 3.906 20 C -0.148 4.148 21 C -0.092 4.092 22 C -0.047 4.047 23 Cl -0.035 7.035 24 H 0.109 0.891 25 H 0.112 0.888 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.027 0.973 29 H 0.088 0.912 30 H 0.260 0.740 31 H 0.165 0.835 32 H 0.139 0.861 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.965 8.744 -2.887 10.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.096 4.096 3 C -0.087 4.087 4 C -0.001 4.001 5 N -0.305 5.305 6 C 0.104 3.896 7 C -0.539 4.539 8 H 0.070 0.930 9 C -0.132 4.132 10 N -0.529 5.529 11 Si 0.711 3.289 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.211 1.211 15 C 0.350 3.650 16 O -0.423 6.423 17 C -0.048 4.048 18 N -0.075 5.075 19 C -0.064 4.064 20 C -0.169 4.169 21 C -0.119 4.119 22 C -0.077 4.077 23 Cl -0.005 7.005 24 H 0.127 0.873 25 H 0.130 0.870 26 H 0.109 0.891 27 H 0.101 0.899 28 H 0.045 0.955 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.182 0.818 32 H 0.157 0.843 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.451 8.449 -2.862 9.565 hybrid contribution 1.455 0.144 1.100 1.829 sum 4.905 8.593 -1.762 10.051 Atomic orbital electron populations 1.81174 1.13082 1.09652 1.08921 1.29103 0.95108 0.92518 0.92865 1.19786 0.81319 1.05795 1.01789 1.21186 0.81471 1.03617 0.93827 1.48218 1.05057 1.10307 1.66911 1.20258 0.92977 0.78246 0.98104 1.21302 1.34296 1.06021 0.92288 0.92971 1.24734 0.95906 0.96803 0.95789 1.69919 1.39843 1.17748 1.25389 0.86692 0.78274 0.79185 0.84753 1.20052 1.21127 1.21097 1.17772 0.85499 0.83665 0.78102 1.90792 1.68730 1.32855 1.49920 1.21230 0.95658 0.87820 1.00088 1.68996 1.08706 1.23871 1.05905 1.23254 0.90145 0.98405 0.94636 1.22382 1.01620 0.92889 0.99998 1.21391 0.91809 0.99479 0.99171 1.22031 0.93120 0.89132 1.03426 1.98387 1.76404 1.30858 1.94900 0.87271 0.86958 0.89139 0.89928 0.95476 0.89466 0.93061 0.81798 0.84286 0.84087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.50 18.54 42.15 0.78 -6.72 16 2 C 0.22 3.18 15.43 -20.76 -0.32 2.86 16 3 C -0.05 -0.58 6.01 -29.52 -0.18 -0.76 16 4 C 0.12 1.97 5.33 -4.04 -0.02 1.95 16 5 N -0.58 -10.91 2.48 -176.09 -0.44 -11.35 16 6 C 0.22 4.83 4.75 -5.19 -0.02 4.81 16 7 C -0.50 -12.22 8.04 -34.44 -0.28 -12.50 16 8 H 0.05 1.35 7.81 -52.49 -0.41 0.94 16 9 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -22.84 13.29 55.43 0.74 -22.10 16 11 Si 0.88 19.99 29.54 -169.99 -5.02 14.97 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 C 0.56 10.96 7.56 -12.22 -0.09 10.87 16 16 O -0.54 -10.89 13.58 5.34 0.07 -10.82 16 17 C 0.09 1.69 6.63 -82.98 -0.55 1.14 16 18 N -0.36 -6.89 5.02 -9.78 -0.05 -6.94 16 19 C 0.09 1.46 11.18 -17.56 -0.20 1.27 16 20 C -0.15 -1.79 10.11 -39.33 -0.40 -2.19 16 21 C -0.09 -1.17 9.98 -39.27 -0.39 -1.56 16 22 C -0.05 -0.75 6.37 -38.93 -0.25 -0.99 16 23 Cl -0.03 -0.54 26.05 -51.86 -1.35 -1.89 16 24 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 25 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.09 1.42 8.05 -51.93 -0.42 1.00 16 27 H 0.08 1.33 7.46 -51.93 -0.39 0.95 16 28 H 0.03 0.61 8.02 -51.93 -0.42 0.20 16 29 H 0.09 1.97 5.18 -53.14 -0.28 1.69 16 30 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 31 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 311.96 15.07 4.70 4.70 Total: -1.00 -28.87 311.96 -6.52 -35.38 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -3.16 Total: -1.75 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -2.79 Total: 6.51 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 1.03 Total: -47.11 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.07 Total: -10.82 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.35 Total: -1.89 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.87 -6.52 -35.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429905764.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.545 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds