Wall clock time and date at job start Tue Mar 31 2020 07:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46883 * 283.47946 * 3 2 1 5 5 N 1.46502 * 109.46805 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00013 * 267.15034 * 5 4 3 7 7 C 1.50697 * 109.47024 * 262.80660 * 6 5 4 8 8 H 1.08001 * 120.00325 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99982 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00076 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99919 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47460 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47183 * 119.99838 * 11 9 7 14 14 H 1.48506 * 109.46907 * 239.99642 * 11 9 7 15 15 C 1.34780 * 120.00140 * 87.15080 * 5 4 3 16 16 O 1.21526 * 119.99501 * 3.62944 * 15 5 4 17 17 C 1.48077 * 120.00195 * 183.63072 * 15 5 4 18 18 N 1.32778 * 119.74038 * 354.01019 * 17 15 5 19 19 C 1.31461 * 121.65778 * 179.97438 * 18 17 15 20 20 C 1.38645 * 120.94038 * 0.02562 * 19 18 17 21 21 C 1.38509 * 119.37391 * 0.27024 * 20 19 18 22 22 C 1.38804 * 118.48109 * 359.44331 * 21 20 19 23 23 Cl 1.73598 * 120.49355 * 180.25848 * 22 21 20 24 24 H 1.08993 * 109.46810 * 163.48203 * 3 2 1 25 25 H 1.08998 * 109.47077 * 43.47685 * 3 2 1 26 26 H 1.09001 * 109.47068 * 60.00196 * 4 3 2 27 27 H 1.09003 * 109.47491 * 299.99720 * 4 3 2 28 28 H 1.08995 * 109.47053 * 22.81170 * 6 5 4 29 29 H 1.09001 * 109.47072 * 142.80767 * 6 5 4 30 30 H 0.96993 * 120.00129 * 180.02562 * 10 9 7 31 31 H 1.07999 * 119.52702 * 180.02562 * 19 18 17 32 32 H 1.08002 * 120.31071 * 179.97438 * 20 19 18 33 33 H 1.08000 * 120.75949 * 179.72604 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.3354 1.4028 5 7 4.5831 -0.3353 1.4026 6 6 5.3157 -1.5823 1.1687 7 6 5.7211 -2.1822 2.4903 8 1 5.4589 -1.6847 3.4124 9 6 6.4267 -3.3663 2.5224 10 7 6.7464 -3.9720 1.3997 11 14 6.9286 -4.1103 4.1607 12 1 6.4520 -3.2407 5.2661 13 1 6.3251 -5.4603 4.2969 14 1 8.4082 -4.2211 4.2214 15 6 5.2570 0.8119 1.6177 16 8 4.6512 1.8330 1.8770 17 6 6.7356 0.8282 1.5379 18 7 7.3989 -0.3101 1.3729 19 6 8.7110 -0.3392 1.2967 20 6 9.4564 0.8263 1.3871 21 6 8.8064 2.0363 1.5658 22 6 7.4202 2.0388 1.6367 23 17 6.5519 3.5265 1.8531 24 1 2.9708 0.9860 -0.2922 25 1 2.9717 -0.7449 -0.7071 26 1 2.7552 -1.3208 1.6950 27 1 2.7545 0.4102 2.1100 28 1 4.6770 -2.2836 0.6319 29 1 6.2062 -1.3747 0.5755 30 1 7.2424 -4.8051 1.4223 31 1 9.2154 -1.2846 1.1617 32 1 10.5339 0.7905 1.3236 33 1 9.3651 2.9572 1.6435 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429905764.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:30 Heat of formation + Delta-G solvation = 35.865312 kcal Electronic energy + Delta-G solvation = -20963.865789 eV Core-core repulsion = 17630.456219 eV Total energy + Delta-G solvation = -3333.409570 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.59155 -39.90099 -37.91620 -37.47091 -36.65512 -34.57171 -33.61533 -32.46921 -31.67114 -28.83831 -26.38218 -25.02632 -24.40847 -23.85068 -20.74464 -18.86504 -18.37542 -18.06743 -17.87106 -17.19602 -16.58177 -16.37502 -16.08186 -16.00243 -15.48591 -14.96894 -14.61352 -14.43224 -14.21802 -14.00767 -13.61474 -13.51681 -13.29665 -13.06964 -12.86729 -12.84468 -12.67233 -12.53779 -12.14764 -12.08861 -11.77238 -11.52657 -10.71783 -10.70533 -10.40733 -9.91095 -9.64303 -9.27765 -7.97321 -6.00559 -0.30080 0.27175 1.17107 1.42170 1.48456 1.55141 1.63815 1.78242 1.91958 2.24823 2.54001 2.93695 3.13554 3.36773 3.43921 3.80466 3.91136 4.06689 4.10865 4.14757 4.43369 4.53636 4.55907 4.84393 4.97219 5.02383 5.09774 5.12836 5.53960 5.69297 5.99807 6.06774 6.38707 6.54259 6.59278 6.94326 7.09551 7.37296 7.62710 9.09494 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.009364 B = 0.008597 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.377926 B = 3256.065344 C = 5647.349406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.246 3.754 3 C -0.029 4.029 4 C 0.121 3.879 5 N -0.580 5.580 6 C 0.239 3.761 7 C -0.500 4.500 8 H 0.030 0.970 9 C 0.038 3.962 10 N -0.910 5.910 11 Si 0.927 3.073 12 H -0.286 1.286 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.557 3.443 16 O -0.557 6.557 17 C 0.059 3.941 18 N -0.403 5.403 19 C 0.077 3.923 20 C -0.119 4.119 21 C -0.082 4.082 22 C -0.054 4.054 23 Cl -0.037 7.037 24 H 0.120 0.880 25 H 0.131 0.869 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.016 0.984 29 H 0.085 0.915 30 H 0.261 0.739 31 H 0.168 0.832 32 H 0.187 0.813 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.998 9.619 -3.075 12.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.071 4.071 3 C -0.070 4.070 4 C -0.003 4.003 5 N -0.309 5.309 6 C 0.119 3.881 7 C -0.539 4.539 8 H 0.048 0.952 9 C -0.161 4.161 10 N -0.550 5.550 11 Si 0.756 3.244 12 H -0.211 1.211 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.345 3.655 16 O -0.437 6.437 17 C -0.080 4.080 18 N -0.114 5.114 19 C -0.083 4.083 20 C -0.139 4.139 21 C -0.107 4.107 22 C -0.084 4.084 23 Cl -0.008 7.008 24 H 0.138 0.862 25 H 0.148 0.852 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.034 0.966 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.185 0.815 32 H 0.205 0.795 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 5.470 9.329 -3.048 11.236 hybrid contribution 0.927 -0.061 1.184 1.505 sum 6.397 9.268 -1.864 11.415 Atomic orbital electron populations 1.81199 1.14225 1.11109 1.10135 1.29180 0.95027 0.91232 0.91666 1.19683 0.80161 1.06936 1.00231 1.21255 0.80103 1.03411 0.95575 1.48144 1.06027 1.09526 1.67163 1.19913 0.92857 0.78783 0.96575 1.21345 1.34049 1.06016 0.92517 0.95169 1.25146 0.96160 0.97191 0.97651 1.69975 1.40641 1.18076 1.26341 0.86004 0.78253 0.78142 0.82046 1.21113 1.21238 1.20298 1.18093 0.86409 0.83419 0.77597 1.90765 1.69315 1.33020 1.50598 1.21112 0.95111 0.88923 1.02825 1.68732 1.10674 1.24730 1.07284 1.23502 0.89440 1.00141 0.95174 1.22779 1.03622 0.91078 0.96375 1.21868 0.90430 1.01288 0.97162 1.22226 0.94479 0.88277 1.03448 1.98383 1.76852 1.30627 1.94908 0.86170 0.85166 0.89399 0.90446 0.96633 0.89753 0.93016 0.81458 0.79536 0.80271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.11 18.54 20.01 0.37 -15.74 16 2 C 0.25 6.88 15.43 89.44 1.38 8.26 16 3 C -0.03 -0.72 6.01 28.79 0.17 -0.55 16 4 C 0.12 3.85 5.33 86.38 0.46 4.31 16 5 N -0.58 -22.21 2.48 -829.30 -2.06 -24.27 16 6 C 0.24 10.49 4.75 85.63 0.41 10.89 16 7 C -0.50 -24.79 8.04 25.60 0.21 -24.58 16 8 H 0.03 1.60 7.81 -2.91 -0.02 1.58 16 9 C 0.04 1.90 5.46 84.66 0.46 2.37 16 10 N -0.91 -46.69 13.29 21.45 0.28 -46.41 16 11 Si 0.93 40.99 29.54 68.60 2.03 43.02 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 13 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 15 C 0.56 21.81 7.56 86.85 0.66 22.47 16 16 O -0.56 -22.32 13.58 -3.80 -0.05 -22.37 16 17 C 0.06 2.14 6.63 41.90 0.28 2.42 16 18 N -0.40 -15.10 5.02 -184.84 -0.93 -16.03 16 19 C 0.08 2.24 11.18 84.85 0.95 3.19 16 20 C -0.12 -2.40 10.11 22.43 0.23 -2.17 16 21 C -0.08 -1.76 9.98 22.47 0.22 -1.54 16 22 C -0.05 -1.62 6.37 22.69 0.14 -1.48 16 23 Cl -0.04 -1.10 26.05 -2.72 -0.07 -1.17 16 24 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 25 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 26 H 0.09 2.80 8.05 -2.39 -0.02 2.78 16 27 H 0.08 2.53 7.46 -2.39 -0.02 2.51 16 28 H 0.02 0.72 8.02 -2.39 -0.02 0.70 16 29 H 0.09 3.86 5.18 -4.78 -0.02 3.83 16 30 H 0.26 12.84 8.31 -92.71 -0.77 12.07 16 31 H 0.17 4.62 8.06 -2.91 -0.02 4.60 16 32 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -62.79 311.96 6.28 -56.51 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: 1.14 Total: 2.85 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: 5.57 Total: 23.60 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -2.33 Total: -102.44 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.05 Total: -22.37 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.07 Total: -1.17 kcal Total: -62.79 6.28 -56.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429905764.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.373 kcal (2) G-P(sol) polarization free energy of solvation -62.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds