Wall clock time and date at job start Tue Mar 31 2020 07:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31126 * 126.54915 * 2 1 4 4 C 1.34491 * 105.61443 * 180.12277 * 3 2 1 5 5 C 1.50704 * 126.28908 * 179.90081 * 4 3 2 6 6 N 1.46497 * 109.47463 * 269.71560 * 5 4 3 7 7 C 1.38900 * 119.99975 * 180.02562 * 6 5 4 8 8 C 1.39546 * 119.84511 * 359.97438 * 7 6 5 9 9 C 1.36353 * 120.16741 * 180.02562 * 8 7 6 10 10 C 1.40908 * 119.85571 * 0.02562 * 9 8 7 11 11 C 1.41129 * 120.14821 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99677 * 24.51896 * 11 10 9 13 13 C 1.39860 * 120.00114 * 204.51844 * 11 10 9 14 14 N 1.30910 * 119.99828 * 17.82595 * 13 11 10 15 15 Si 1.86793 * 120.00207 * 197.83164 * 13 11 10 16 16 H 1.48500 * 109.47322 * 59.99778 * 15 13 11 17 17 H 1.48495 * 109.47606 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47282 * 299.99897 * 15 13 11 19 19 C 1.40860 * 119.69710 * 359.75462 * 10 9 8 20 20 C 1.36435 * 119.82782 * 0.47979 * 19 10 9 21 21 Cl 1.73603 * 119.92749 * 179.79342 * 20 19 10 22 22 N 1.29948 * 107.42545 * 359.64057 * 4 3 2 23 23 O 1.21301 * 110.24883 * 0.23027 * 22 4 3 24 24 H 1.08998 * 109.46932 * 180.24804 * 1 2 3 25 25 H 1.08995 * 109.47157 * 300.24824 * 1 2 3 26 26 H 1.08997 * 109.46716 * 60.25313 * 1 2 3 27 27 H 1.09008 * 109.46974 * 149.71434 * 5 4 3 28 28 H 1.09000 * 109.46837 * 29.71556 * 5 4 3 29 29 H 0.96996 * 119.99935 * 359.97438 * 6 5 4 30 30 H 1.07998 * 119.91636 * 0.02562 * 8 7 6 31 31 H 1.07998 * 120.06773 * 180.02562 * 9 8 7 32 32 H 0.96993 * 119.99839 * 179.97438 * 14 13 11 33 33 H 1.08000 * 120.08367 * 180.27258 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 -0.0028 5 6 4.8112 1.3887 -0.0060 6 7 5.2223 1.6469 -1.3882 7 6 6.3709 2.3846 -1.6449 8 6 7.1305 2.8787 -0.5837 9 6 8.2589 3.6041 -0.8281 10 6 8.6575 3.8551 -2.1561 11 6 9.8240 4.6057 -2.4161 12 1 10.6108 4.6541 -1.6778 13 6 9.9613 5.2867 -3.6300 14 7 8.9075 5.5264 -4.3688 15 14 11.6482 5.8542 -4.1970 16 1 12.5432 4.6782 -4.3423 17 1 11.5240 6.5457 -5.5052 18 1 12.2187 6.7895 -3.1945 19 6 7.8889 3.3496 -3.2228 20 6 6.7594 2.6294 -2.9638 21 17 5.8073 2.0097 -4.2765 22 7 3.4646 -0.7242 0.0035 23 8 2.3030 -1.0736 0.0051 24 1 -0.3633 -1.0276 0.0044 25 1 -0.3633 0.5177 0.8877 26 1 -0.3633 0.5099 -0.8922 27 1 5.5983 0.8394 0.5106 28 1 4.6346 2.3360 0.5035 29 1 4.6928 1.3020 -2.1241 30 1 6.8238 2.6861 0.4338 31 1 8.8458 3.9854 -0.0056 32 1 9.0027 5.9990 -5.2104 33 1 8.1911 3.5345 -4.2430 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453120624.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:54 Heat of formation + Delta-G solvation = 63.430128 kcal Electronic energy + Delta-G solvation = -19874.640724 eV Core-core repulsion = 16542.426454 eV Total energy + Delta-G solvation = -3332.214270 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.74897 -40.04347 -37.71642 -37.16054 -36.45444 -35.08425 -34.16673 -31.40433 -30.85031 -29.76706 -28.54742 -25.99941 -24.74636 -23.34800 -22.41644 -21.98497 -19.36107 -19.31208 -18.65254 -17.91577 -17.37528 -16.55138 -16.06401 -15.96026 -15.17727 -14.92342 -14.79631 -14.57495 -14.20470 -14.15901 -13.93382 -13.75612 -13.44866 -12.97508 -12.89331 -12.83058 -12.68446 -12.50208 -12.23040 -12.12125 -11.94980 -11.54967 -11.44305 -11.15285 -11.00599 -10.48642 -9.37252 -8.62030 -8.33065 -6.10386 0.07356 0.87186 0.98282 1.04382 1.41934 1.50625 1.52689 1.56254 1.88438 2.25645 2.44559 2.73430 2.83685 2.94800 3.68884 3.87417 4.21881 4.30529 4.42514 4.55140 4.65148 4.67087 4.69031 4.93749 5.00760 5.07975 5.13694 5.29585 5.41284 5.51493 5.71616 6.00522 6.22332 6.47327 6.63761 6.80938 6.99497 7.04396 7.08701 8.41752 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.034655 B = 0.003362 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.773940 B = 8326.919187 C = 8796.653940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.188 3.812 3 N -0.503 5.503 4 C 0.151 3.849 5 C 0.230 3.770 6 N -0.748 5.748 7 C 0.110 3.890 8 C -0.146 4.146 9 C -0.185 4.185 10 C 0.053 3.947 11 C -0.496 4.496 12 H 0.079 0.921 13 C 0.033 3.967 14 N -0.833 5.833 15 Si 0.977 3.023 16 H -0.263 1.263 17 H -0.273 1.273 18 H -0.259 1.259 19 C -0.140 4.140 20 C -0.076 4.076 21 Cl -0.106 7.106 22 N -0.390 5.390 23 O 0.083 5.917 24 H 0.125 0.875 25 H 0.122 0.878 26 H 0.116 0.884 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.391 0.609 30 H 0.133 0.867 31 H 0.113 0.887 32 H 0.285 0.715 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.516 -8.951 6.924 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.031 4.031 3 N -0.237 5.237 4 C -0.121 4.121 5 C 0.104 3.896 6 N -0.385 5.385 7 C 0.011 3.989 8 C -0.168 4.168 9 C -0.205 4.205 10 C 0.049 3.951 11 C -0.527 4.527 12 H 0.097 0.903 13 C -0.180 4.180 14 N -0.460 5.460 15 Si 0.799 3.201 16 H -0.187 1.187 17 H -0.197 1.197 18 H -0.183 1.183 19 C -0.160 4.160 20 C -0.106 4.106 21 Cl -0.077 7.077 22 N -0.097 5.097 23 O 0.021 5.979 24 H 0.143 0.857 25 H 0.140 0.860 26 H 0.134 0.866 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.225 0.775 30 H 0.151 0.849 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.872 -8.955 6.822 17.865 hybrid contribution 0.402 0.230 -0.962 1.068 sum -13.470 -8.724 5.860 17.085 Atomic orbital electron populations 1.20800 0.76001 1.07909 1.07019 1.29992 1.00618 0.79387 0.93152 1.71927 1.00199 1.30166 1.21440 1.25825 0.95702 0.88344 1.02270 1.19261 0.87520 0.97289 0.85509 1.43767 1.27345 1.61916 1.05481 1.17046 0.90621 1.00335 0.90941 1.20145 0.96811 1.03102 0.96741 1.20906 0.98615 1.04999 0.95995 1.17716 0.93667 0.92641 0.91056 1.19603 1.03216 1.27568 1.02282 0.90284 1.26665 1.01572 0.94057 0.95738 1.69899 1.32012 1.31670 1.12440 0.85318 0.77793 0.78952 0.78049 1.18746 1.19741 1.18285 1.20755 0.95402 0.99741 1.00148 1.20146 0.97237 1.07171 0.86038 1.98224 1.72769 1.87055 1.49688 1.74680 0.98604 1.15832 1.20609 1.85277 1.11021 1.36257 1.65355 0.85656 0.86013 0.86623 0.89577 0.89192 0.77503 0.84881 0.86849 0.90482 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.51 71.24 0.75 0.42 16 2 C 0.19 3.47 8.51 88.38 0.75 4.22 16 3 N -0.50 -13.18 11.55 -303.20 -3.50 -16.69 16 4 C 0.15 4.40 7.59 138.46 1.05 5.45 16 5 C 0.23 6.97 5.51 85.64 0.47 7.44 16 6 N -0.75 -27.34 5.65 -342.60 -1.94 -29.28 16 7 C 0.11 4.74 6.67 38.68 0.26 5.00 16 8 C -0.15 -6.09 9.23 22.15 0.20 -5.88 16 9 C -0.19 -8.67 9.74 22.48 0.22 -8.45 16 10 C 0.05 2.80 5.57 -21.27 -0.12 2.68 16 11 C -0.50 -26.52 9.03 23.37 0.21 -26.30 16 12 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 13 C 0.03 1.69 5.13 85.22 0.44 2.13 16 14 N -0.83 -44.47 10.96 21.81 0.24 -44.23 16 15 Si 0.98 38.85 29.59 68.60 2.03 40.88 16 16 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 17 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 18 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 19 C -0.14 -7.42 8.40 22.49 0.19 -7.23 16 20 C -0.08 -3.60 6.30 22.19 0.14 -3.46 16 21 Cl -0.11 -4.40 27.55 -2.72 -0.07 -4.47 16 22 N -0.39 -11.13 12.16 -60.33 -0.73 -11.87 16 23 O 0.08 1.86 11.31 74.86 0.85 2.71 16 24 H 0.12 0.01 8.14 -2.39 -0.02 0.00 16 25 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.09 2.47 7.93 -2.38 -0.02 2.45 16 28 H 0.09 2.60 7.93 -2.39 -0.02 2.58 16 29 H 0.39 14.45 7.10 -92.71 -0.66 13.79 16 30 H 0.13 4.57 6.68 -2.91 -0.02 4.55 16 31 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 32 H 0.28 13.95 8.30 -92.71 -0.77 13.18 16 33 H 0.11 6.24 6.17 -2.91 -0.02 6.22 16 Total: -1.00 -64.89 306.77 1.95 -62.94 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.51 Total: 23.97 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 4.56 Total: -23.97 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -5.93 Total: -102.06 kcal Atomic # 8 Polarization: 1.86 SS G_CDS: 0.85 Total: 2.71 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Atomic # 17 Polarization: -4.40 SS G_CDS: -0.07 Total: -4.47 kcal Total: -64.89 1.95 -62.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453120624.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.371 kcal (2) G-P(sol) polarization free energy of solvation -64.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds