Wall clock time and date at job start Tue Mar 31 2020 06:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86796 * 120.00037 * 2 1 4 4 H 1.48497 * 109.47470 * 240.00144 * 3 2 1 5 5 H 1.48507 * 109.46977 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47082 * 119.99791 * 3 2 1 7 7 C 1.39858 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99973 * 197.96409 * 7 2 1 9 9 C 1.41130 * 120.00466 * 17.97393 * 7 2 1 10 10 C 1.40903 * 120.15141 * 204.60369 * 9 7 2 11 11 C 1.36346 * 119.85690 * 179.73716 * 10 9 7 12 12 C 1.39556 * 120.16934 * 0.53246 * 11 10 9 13 13 N 1.38897 * 119.84929 * 179.76273 * 12 11 10 14 14 C 1.46499 * 119.99750 * 359.72144 * 13 12 11 15 15 C 1.52996 * 109.47193 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47497 * 180.02562 * 15 14 13 17 17 F 1.39905 * 109.47159 * 59.99963 * 16 15 14 18 18 F 1.39898 * 109.47575 * 179.97438 * 16 15 14 19 19 F 1.39899 * 109.46915 * 299.99981 * 16 15 14 20 20 C 1.39665 * 120.30456 * 359.48189 * 12 11 10 21 21 Cl 1.73600 * 119.93147 * 180.25515 * 20 12 11 22 22 C 1.36434 * 120.14127 * 0.23527 * 20 12 11 23 23 H 0.97004 * 120.00281 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.07266 * 0.02562 * 10 9 7 25 25 H 1.07993 * 119.92037 * 180.29103 * 11 10 9 26 26 H 0.96999 * 120.00294 * 179.72101 * 13 12 11 27 27 H 1.09000 * 109.47239 * 59.99950 * 14 13 12 28 28 H 1.09003 * 109.47298 * 300.00025 * 14 13 12 29 29 H 1.09007 * 109.47298 * 299.99995 * 15 14 13 30 30 H 1.09000 * 109.47255 * 59.99731 * 15 14 13 31 31 H 1.08005 * 120.09132 * 179.97438 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 1.2779 2.7465 0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0083 -1.2112 0.0005 8 1 3.0488 -1.2339 0.2890 9 6 1.3543 -2.4038 -0.3761 10 6 1.8268 -3.6472 0.0888 11 6 1.1872 -4.7953 -0.2744 12 6 0.0735 -4.7422 -1.1138 13 7 -0.5700 -5.9162 -1.4836 14 6 -0.0756 -7.2068 -0.9976 15 6 -0.9558 -8.3304 -1.5486 16 6 -0.4399 -9.6782 -1.0406 17 9 -0.4815 -9.6965 0.3577 18 9 -1.2451 -10.7056 -1.5440 19 9 0.8782 -9.8650 -1.4705 20 6 -0.4005 -3.5136 -1.5789 21 17 -1.7907 -3.4583 -2.6172 22 6 0.2264 -2.3566 -1.2187 23 1 -0.4851 0.8401 -0.0004 24 1 2.6909 -3.6905 0.7352 25 1 1.5456 -5.7484 0.0851 26 1 -1.3467 -5.8816 -2.0636 27 1 -0.1072 -7.2211 0.0918 28 1 0.9512 -7.3524 -1.3333 29 1 -1.9828 -8.1851 -1.2134 30 1 -0.9238 -8.3159 -2.6381 31 1 -0.1406 -1.4069 -1.5792 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453122146.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:33 Heat of formation + Delta-G solvation = -152.592674 kcal Electronic energy + Delta-G solvation = -20483.763097 eV Core-core repulsion = 16568.031884 eV Total energy + Delta-G solvation = -3915.731213 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.049 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.25380 -47.76571 -47.71125 -38.33734 -35.89542 -35.44500 -33.54792 -31.72102 -29.45366 -28.59384 -25.77696 -24.03593 -22.65857 -20.85277 -20.47396 -18.70367 -18.51885 -17.70172 -17.35358 -15.97555 -15.60696 -15.31609 -14.84895 -14.58835 -14.30924 -14.25123 -14.13034 -13.86981 -13.86436 -13.07239 -12.98747 -12.71799 -12.68834 -12.10080 -11.96962 -11.79354 -11.59128 -11.16990 -11.07758 -10.82696 -10.45433 -10.28242 -9.73223 -9.68336 -9.40353 -8.73981 -7.56887 -6.81300 -6.59637 -4.22086 2.55802 2.68178 2.82856 3.08590 3.10516 3.19633 3.25922 3.52587 3.81561 3.88529 3.95097 4.38260 4.55722 4.73986 4.82291 5.16583 5.55091 5.75744 5.76415 6.02530 6.40893 6.75760 6.89839 7.10143 7.22941 7.34421 7.53342 7.84331 8.08580 8.17009 8.42339 8.52071 8.85783 8.88656 10.21224 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.028987 B = 0.003543 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.710277 B = 7901.394544 C = 8606.727528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.078 0.922 9 C 0.087 3.913 10 C -0.184 4.184 11 C -0.145 4.145 12 C 0.093 3.907 13 N -0.757 5.757 14 C 0.137 3.863 15 C -0.179 4.179 16 C 0.459 3.541 17 F -0.181 7.181 18 F -0.186 7.186 19 F -0.182 7.182 20 C -0.058 4.058 21 Cl -0.124 7.124 22 C -0.121 4.121 23 H 0.281 0.719 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.391 0.609 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.442 -12.397 -2.940 12.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.083 3.917 10 C -0.205 4.205 11 C -0.167 4.167 12 C -0.004 4.004 13 N -0.395 5.395 14 C 0.011 3.989 15 C -0.218 4.218 16 C 0.404 3.596 17 F -0.163 7.163 18 F -0.168 7.168 19 F -0.163 7.163 20 C -0.088 4.088 21 Cl -0.096 7.096 22 C -0.142 4.142 23 H 0.092 0.908 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.226 0.774 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.636 -12.366 -2.897 12.972 hybrid contribution -0.079 0.522 -0.153 0.549 sum -2.715 -11.845 -3.050 12.529 Atomic orbital electron populations 1.69820 1.07441 1.29312 1.35808 1.25853 0.94715 1.01195 0.92444 0.86391 0.80132 0.80436 0.79901 1.18893 1.20424 1.19102 1.19355 0.98140 0.91109 1.40668 0.90386 1.17386 0.91536 0.92377 0.90374 1.20666 1.02804 0.92389 1.04611 1.19848 0.96975 0.97749 1.02138 1.16907 0.96737 0.83846 1.02960 1.43696 1.35473 1.01783 1.58511 1.20914 0.96539 0.82554 0.98862 1.23039 1.03605 0.90214 1.04941 1.20379 0.75663 0.87863 0.75672 1.93205 1.96199 1.96928 1.29965 1.93186 1.73453 1.62848 1.87268 1.93201 1.37446 1.96094 1.89575 1.20033 0.92586 0.94133 1.02020 1.98232 1.44719 1.98612 1.68049 1.20901 0.98291 0.95627 0.99371 0.90817 0.88273 0.88349 0.77427 0.91953 0.91962 0.86844 0.86848 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.29 10.96 55.54 0.61 -19.68 16 2 C 0.07 1.84 5.13 -17.34 -0.09 1.75 16 3 Si 0.91 18.39 29.60 -169.99 -5.03 13.36 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -11.87 9.03 -37.88 -0.34 -12.21 16 8 H 0.08 1.92 7.91 -52.49 -0.41 1.50 16 9 C 0.09 2.22 5.57 -106.80 -0.60 1.62 16 10 C -0.18 -4.26 9.74 -39.26 -0.38 -4.65 16 11 C -0.14 -3.04 9.23 -39.77 -0.37 -3.41 16 12 C 0.09 1.93 6.67 -83.64 -0.56 1.37 16 13 N -0.76 -12.38 5.66 -58.47 -0.33 -12.71 16 14 C 0.14 1.80 4.65 -4.04 -0.02 1.78 16 15 C -0.18 -1.73 5.37 -26.73 -0.14 -1.87 16 16 C 0.46 4.76 3.16 37.16 0.12 4.87 16 17 F -0.18 -2.09 16.80 2.25 0.04 -2.05 16 18 F -0.19 -1.94 17.32 2.25 0.04 -1.91 16 19 F -0.18 -2.07 16.80 2.25 0.04 -2.03 16 20 C -0.06 -1.30 6.30 -39.70 -0.25 -1.55 16 21 Cl -0.12 -2.39 27.55 -51.86 -1.43 -3.82 16 22 C -0.12 -3.04 8.40 -39.24 -0.33 -3.37 16 23 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 24 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 25 H 0.10 1.80 6.68 -52.49 -0.35 1.45 16 26 H 0.39 5.95 7.11 -40.82 -0.29 5.66 16 27 H 0.06 0.85 7.58 -51.93 -0.39 0.46 16 28 H 0.06 0.83 7.60 -51.93 -0.39 0.44 16 29 H 0.11 0.96 8.14 -51.92 -0.42 0.53 16 30 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.13 3.46 6.16 -52.48 -0.32 3.13 16 LS Contribution 294.92 15.07 4.44 4.44 Total: -1.00 -26.26 294.92 -7.15 -33.41 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -2.57 Total: 6.64 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -2.96 Total: -15.66 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.28 Total: -32.39 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.11 Total: -5.98 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -1.43 Total: -3.82 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.26 -7.15 -33.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453122146.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.187 kcal (2) G-P(sol) polarization free energy of solvation -26.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds