Wall clock time and date at job start Tue Mar 31 2020 06:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86796 * 120.00037 * 2 1 4 4 H 1.48497 * 109.47470 * 240.00144 * 3 2 1 5 5 H 1.48507 * 109.46977 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47082 * 119.99791 * 3 2 1 7 7 C 1.39858 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99973 * 197.96409 * 7 2 1 9 9 C 1.41130 * 120.00466 * 17.97393 * 7 2 1 10 10 C 1.40903 * 120.15141 * 204.60369 * 9 7 2 11 11 C 1.36346 * 119.85690 * 179.73716 * 10 9 7 12 12 C 1.39556 * 120.16934 * 0.53246 * 11 10 9 13 13 N 1.38897 * 119.84929 * 179.76273 * 12 11 10 14 14 C 1.46499 * 119.99750 * 359.72144 * 13 12 11 15 15 C 1.52996 * 109.47193 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47497 * 180.02562 * 15 14 13 17 17 F 1.39905 * 109.47159 * 59.99963 * 16 15 14 18 18 F 1.39898 * 109.47575 * 179.97438 * 16 15 14 19 19 F 1.39899 * 109.46915 * 299.99981 * 16 15 14 20 20 C 1.39665 * 120.30456 * 359.48189 * 12 11 10 21 21 Cl 1.73600 * 119.93147 * 180.25515 * 20 12 11 22 22 C 1.36434 * 120.14127 * 0.23527 * 20 12 11 23 23 H 0.97004 * 120.00281 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.07266 * 0.02562 * 10 9 7 25 25 H 1.07993 * 119.92037 * 180.29103 * 11 10 9 26 26 H 0.96999 * 120.00294 * 179.72101 * 13 12 11 27 27 H 1.09000 * 109.47239 * 59.99950 * 14 13 12 28 28 H 1.09003 * 109.47298 * 300.00025 * 14 13 12 29 29 H 1.09007 * 109.47298 * 299.99995 * 15 14 13 30 30 H 1.09000 * 109.47255 * 59.99731 * 15 14 13 31 31 H 1.08005 * 120.09132 * 179.97438 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 1.2779 2.7465 0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0083 -1.2112 0.0005 8 1 3.0488 -1.2339 0.2890 9 6 1.3543 -2.4038 -0.3761 10 6 1.8268 -3.6472 0.0888 11 6 1.1872 -4.7953 -0.2744 12 6 0.0735 -4.7422 -1.1138 13 7 -0.5700 -5.9162 -1.4836 14 6 -0.0756 -7.2068 -0.9976 15 6 -0.9558 -8.3304 -1.5486 16 6 -0.4399 -9.6782 -1.0406 17 9 -0.4815 -9.6965 0.3577 18 9 -1.2451 -10.7056 -1.5440 19 9 0.8782 -9.8650 -1.4705 20 6 -0.4005 -3.5136 -1.5789 21 17 -1.7907 -3.4583 -2.6172 22 6 0.2264 -2.3566 -1.2187 23 1 -0.4851 0.8401 -0.0004 24 1 2.6909 -3.6905 0.7352 25 1 1.5456 -5.7484 0.0851 26 1 -1.3467 -5.8816 -2.0636 27 1 -0.1072 -7.2211 0.0918 28 1 0.9512 -7.3524 -1.3333 29 1 -1.9828 -8.1851 -1.2134 30 1 -0.9238 -8.3159 -2.6381 31 1 -0.1406 -1.4069 -1.5792 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453122146.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:32 Heat of formation + Delta-G solvation = -165.595076 kcal Electronic energy + Delta-G solvation = -20484.326924 eV Core-core repulsion = 16568.031884 eV Total energy + Delta-G solvation = -3916.295040 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.049 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.09392 -48.59704 -48.57168 -39.98902 -37.30046 -37.09191 -35.17373 -33.04279 -31.19786 -30.22191 -27.13359 -25.53916 -23.77985 -22.44923 -22.08223 -19.54114 -19.42911 -19.22165 -18.62909 -17.37809 -17.26037 -16.34523 -16.26555 -15.95066 -15.46925 -15.22506 -14.99275 -14.77091 -14.72271 -14.67668 -14.60426 -14.30944 -14.17519 -13.60614 -13.02161 -12.95151 -12.86155 -12.79481 -12.67909 -12.48861 -12.06513 -11.89261 -11.50084 -11.38402 -11.09229 -10.40557 -9.33273 -8.59734 -8.26134 -6.07458 0.90556 1.07580 1.42844 1.52311 1.55382 1.57883 1.71443 2.26831 2.54927 2.76356 2.96056 3.08835 3.22003 3.71222 3.84053 4.01443 4.29103 4.41493 4.71561 4.76576 4.79180 5.05904 5.11912 5.32676 5.46328 5.55401 5.76739 6.03060 6.26001 6.53480 6.69062 6.98095 7.01806 7.11113 8.43313 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.028987 B = 0.003543 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.710277 B = 7901.394544 C = 8606.727528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.035 3.965 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.500 4.500 8 H 0.076 0.924 9 C 0.050 3.950 10 C -0.189 4.189 11 C -0.150 4.150 12 C 0.113 3.887 13 N -0.748 5.748 14 C 0.131 3.869 15 C -0.168 4.168 16 C 0.463 3.537 17 F -0.189 7.189 18 F -0.185 7.185 19 F -0.188 7.188 20 C -0.076 4.076 21 Cl -0.099 7.099 22 C -0.141 4.141 23 H 0.285 0.715 24 H 0.108 0.892 25 H 0.129 0.871 26 H 0.398 0.602 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.729 -13.781 -3.344 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.178 4.178 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.530 4.530 8 H 0.094 0.906 9 C 0.047 3.953 10 C -0.209 4.209 11 C -0.172 4.172 12 C 0.012 3.988 13 N -0.385 5.385 14 C 0.007 3.993 15 C -0.207 4.207 16 C 0.408 3.592 17 F -0.170 7.170 18 F -0.166 7.166 19 F -0.170 7.170 20 C -0.107 4.107 21 Cl -0.071 7.071 22 C -0.161 4.161 23 H 0.095 0.905 24 H 0.126 0.874 25 H 0.146 0.854 26 H 0.234 0.766 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.939 -13.801 -3.311 14.494 hybrid contribution -0.068 0.710 -0.073 0.717 sum -3.007 -13.091 -3.383 13.851 Atomic orbital electron populations 1.69890 1.08767 1.30195 1.37174 1.26612 0.95400 1.04158 0.91668 0.85350 0.78784 0.76271 0.79890 1.18723 1.19677 1.18497 1.19592 0.98355 0.92372 1.42697 0.90588 1.17700 0.92597 0.93425 0.91578 1.20888 1.03098 0.92460 1.04432 1.20134 0.96808 0.98322 1.01919 1.17053 0.95947 0.84793 1.00982 1.43771 1.35118 1.01706 1.57913 1.21057 0.97407 0.81917 0.98963 1.22962 1.03557 0.88182 1.05966 1.20415 0.75359 0.88134 0.75265 1.93196 1.96206 1.96973 1.30667 1.93191 1.73373 1.62851 1.87208 1.93194 1.38015 1.96160 1.89594 1.20121 0.93556 0.94158 1.02818 1.98225 1.43129 1.98620 1.67116 1.20771 0.99153 0.95762 1.00452 0.90506 0.87429 0.85366 0.76569 0.92045 0.91775 0.85140 0.84966 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.75 10.96 21.81 0.24 -43.51 16 2 C 0.04 1.77 5.13 85.22 0.44 2.20 16 3 Si 0.98 38.42 29.60 68.60 2.03 40.45 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.50 -26.51 9.03 23.37 0.21 -26.30 16 8 H 0.08 3.87 7.91 -2.91 -0.02 3.85 16 9 C 0.05 2.64 5.57 -21.27 -0.12 2.52 16 10 C -0.19 -8.74 9.74 22.48 0.22 -8.52 16 11 C -0.15 -6.05 9.23 22.15 0.20 -5.84 16 12 C 0.11 4.47 6.67 38.69 0.26 4.72 16 13 N -0.75 -22.37 5.66 -338.89 -1.92 -24.29 16 14 C 0.13 3.02 4.65 86.38 0.40 3.42 16 15 C -0.17 -2.64 5.37 30.59 0.16 -2.48 16 16 C 0.46 8.29 3.16 71.98 0.23 8.52 16 17 F -0.19 -3.89 16.80 44.97 0.76 -3.14 16 18 F -0.18 -3.36 17.32 44.97 0.78 -2.58 16 19 F -0.19 -3.82 16.80 44.97 0.76 -3.06 16 20 C -0.08 -3.39 6.30 22.19 0.14 -3.25 16 21 Cl -0.10 -3.71 27.55 -2.72 -0.07 -3.78 16 22 C -0.14 -7.22 8.40 22.49 0.19 -7.03 16 23 H 0.28 13.71 8.30 -92.71 -0.77 12.94 16 24 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 25 H 0.13 4.35 6.68 -2.91 -0.02 4.33 16 26 H 0.40 10.88 7.11 -92.71 -0.66 10.22 16 27 H 0.06 1.48 7.58 -2.39 -0.02 1.46 16 28 H 0.06 1.51 7.60 -2.39 -0.02 1.49 16 29 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.13 1.64 8.14 -2.39 -0.02 1.63 16 31 H 0.11 6.03 6.16 -2.91 -0.02 6.01 16 Total: -1.00 -57.37 294.92 5.43 -51.93 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.53 Total: 19.99 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 2.33 Total: -32.02 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -1.68 Total: -67.79 kcal Atomic # 9 Polarization: -11.07 SS G_CDS: 2.29 Total: -8.78 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 17 Polarization: -3.71 SS G_CDS: -0.07 Total: -3.78 kcal Total: -57.37 5.43 -51.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453122146.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.660 kcal (2) G-P(sol) polarization free energy of solvation -57.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds