Wall clock time and date at job start Tue Mar 31 2020 07:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29954 * 126.28266 * 2 1 4 4 O 1.21295 * 110.24865 * 180.02562 * 3 2 1 5 5 C 1.33644 * 109.81282 * 359.97438 * 4 3 2 6 6 C 1.50707 * 126.55204 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.47186 * 270.02597 * 6 5 4 8 8 C 1.38899 * 119.99826 * 179.97438 * 7 6 5 9 9 C 1.39546 * 119.84482 * 0.02562 * 8 7 6 10 10 C 1.36343 * 120.16839 * 179.72791 * 9 8 7 11 11 C 1.40910 * 119.85957 * 0.26576 * 10 9 8 12 12 C 1.41123 * 120.15420 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00097 * 154.52607 * 12 11 10 14 14 C 1.39866 * 120.00384 * 334.53485 * 12 11 10 15 15 N 1.30904 * 119.99395 * 343.06551 * 14 12 11 16 16 Si 1.86795 * 120.00343 * 163.06135 * 14 12 11 17 17 H 1.48496 * 109.47165 * 59.99963 * 16 14 12 18 18 H 1.48501 * 109.47329 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46986 * 300.00268 * 16 14 12 20 20 C 1.40870 * 119.69303 * 0.02562 * 11 10 9 21 21 C 1.36429 * 119.83080 * 359.97438 * 20 11 10 22 22 Cl 1.73591 * 119.93180 * 180.02562 * 21 20 11 23 23 N 1.31133 * 106.89606 * 0.23128 * 5 4 3 24 24 H 1.08995 * 109.47257 * 89.98087 * 1 2 3 25 25 H 1.08995 * 109.46703 * 209.97736 * 1 2 3 26 26 H 1.09001 * 109.47006 * 329.97348 * 1 2 3 27 27 H 1.09000 * 109.46891 * 150.02590 * 6 5 4 28 28 H 1.08995 * 109.46775 * 30.02957 * 6 5 4 29 29 H 0.96997 * 120.00245 * 0.02562 * 7 6 5 30 30 H 1.08002 * 119.91624 * 359.97438 * 9 8 7 31 31 H 1.08005 * 120.07365 * 180.30176 * 10 9 8 32 32 H 0.97002 * 119.99976 * 180.02562 * 15 14 12 33 33 H 1.08003 * 120.08158 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0476 0.0000 4 8 3.4418 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7971 -1.4368 -0.0014 7 7 5.2067 -1.7009 -1.3829 8 6 6.3551 -2.4396 -1.6376 9 6 7.1158 -2.9291 -0.5750 10 6 8.2412 -3.6597 -0.8174 11 6 8.6391 -3.9157 -2.1447 12 6 9.8031 -4.6707 -2.4028 13 1 9.9006 -5.2120 -3.3322 14 6 10.8304 -4.7182 -1.4548 15 7 10.8787 -3.8272 -0.4970 16 14 12.1333 -6.0529 -1.5555 17 1 12.8474 -5.9507 -2.8535 18 1 13.1018 -5.8842 -0.4425 19 1 11.4861 -7.3853 -1.4502 20 6 7.8701 -3.4135 -3.2129 21 6 6.7463 -2.6840 -2.9559 22 17 5.7964 -2.0644 -4.2702 23 7 2.3030 -1.0840 -0.0047 24 1 -0.3633 0.0003 -1.0276 25 1 -0.3632 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5142 27 1 4.6211 -2.3819 0.5124 28 1 5.5846 -0.8852 0.5121 29 1 4.6765 -1.3593 -2.1198 30 1 6.8102 -2.7321 0.4419 31 1 8.8262 -4.0419 0.0061 32 1 11.5913 -3.8598 0.1603 33 1 8.1695 -3.6056 -4.2327 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453133796.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:56 Heat of formation + Delta-G solvation = 82.147746 kcal Electronic energy + Delta-G solvation = -19868.889319 eV Core-core repulsion = 16537.486705 eV Total energy + Delta-G solvation = -3331.402613 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.71220 -38.37399 -36.30395 -35.63914 -35.55360 -33.59997 -32.50005 -29.64485 -29.51326 -29.04891 -26.95515 -24.31359 -23.64436 -22.02409 -21.07239 -20.35434 -18.26795 -17.61978 -17.48212 -16.66561 -15.47400 -15.15423 -14.53456 -14.49269 -14.21899 -13.82497 -13.66045 -13.12912 -13.06672 -12.91153 -12.55726 -12.26741 -12.16992 -11.84364 -11.55900 -11.31654 -11.17337 -11.14713 -10.76584 -10.46768 -10.33751 -10.12460 -9.96441 -9.58160 -9.46581 -8.79661 -7.63271 -6.83005 -6.66266 -4.26301 0.93995 2.04039 2.64535 2.71324 2.72511 3.06767 3.08634 3.15226 3.19283 3.47234 3.87762 3.93254 4.13610 4.53297 4.74474 5.11728 5.14385 5.22284 5.45267 5.51285 5.55823 5.69801 5.85405 5.96366 6.42147 6.65676 6.86692 7.07395 7.13774 7.26609 7.53477 7.87551 7.91426 8.01652 8.12133 8.32823 8.50970 8.81766 8.86154 10.18238 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.026960 B = 0.003455 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.308874 B = 8102.726007 C = 8826.803596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.163 3.837 3 N -0.386 5.386 4 O 0.084 5.916 5 C 0.182 3.818 6 C 0.232 3.768 7 N -0.753 5.753 8 C 0.098 3.902 9 C -0.152 4.152 10 C -0.118 4.118 11 C 0.090 3.910 12 C -0.461 4.461 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.801 5.801 16 Si 0.908 3.092 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.264 1.264 20 C -0.184 4.184 21 C -0.050 4.050 22 Cl -0.125 7.125 23 N -0.469 5.469 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.393 0.607 30 H 0.101 0.899 31 H 0.126 0.874 32 H 0.281 0.719 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.668 4.275 3.032 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 N -0.094 5.094 4 O 0.025 5.975 5 C -0.040 4.040 6 C 0.105 3.895 7 N -0.394 5.394 8 C 0.000 4.000 9 C -0.174 4.174 10 C -0.138 4.138 11 C 0.086 3.914 12 C -0.491 4.491 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.427 5.427 16 Si 0.733 3.267 17 H -0.191 1.191 18 H -0.204 1.204 19 H -0.189 1.189 20 C -0.204 4.204 21 C -0.080 4.080 22 Cl -0.097 7.097 23 N -0.204 5.204 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.228 0.772 30 H 0.119 0.881 31 H 0.144 0.856 32 H 0.091 0.909 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.221 4.908 3.320 13.582 hybrid contribution 0.516 -0.310 -0.407 0.727 sum -11.705 4.597 2.913 12.908 Atomic orbital electron populations 1.20128 0.82916 1.04591 1.04319 1.25965 1.00671 0.83599 1.00755 1.74647 0.89490 1.24048 1.21234 1.85325 1.22199 1.24909 1.65073 1.28996 0.97097 0.82044 0.95832 1.19485 0.85648 0.96278 0.88102 1.43669 1.28693 1.63414 1.03595 1.16863 0.89965 1.01704 0.91451 1.20047 0.97790 1.04360 0.95177 1.21053 0.94902 0.99976 0.97850 1.17406 0.92262 0.91397 0.90320 1.19362 1.00069 1.26446 1.03203 0.90470 1.25835 0.98734 0.95292 0.94262 1.69812 1.30911 1.29357 1.12619 0.86363 0.79826 0.81778 0.78741 1.19086 1.20427 1.18891 1.20499 0.96888 1.04125 0.98928 1.19818 0.96789 1.06836 0.84591 1.98242 1.73618 1.87545 1.50282 1.71958 0.99729 1.29285 1.19408 0.89332 0.88982 0.89568 0.88328 0.89152 0.77171 0.88086 0.85624 0.90851 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 36.01 0.38 -0.12 16 2 C 0.16 2.08 8.22 -156.37 -1.28 0.79 16 3 N -0.39 -5.43 12.16 30.90 0.38 -5.05 16 4 O 0.08 1.18 11.31 18.10 0.20 1.38 16 5 C 0.18 2.48 7.88 -13.05 -0.10 2.38 16 6 C 0.23 3.12 5.51 -5.19 -0.03 3.09 16 7 N -0.75 -12.57 5.65 -59.64 -0.34 -12.90 16 8 C 0.10 1.96 6.67 -83.64 -0.56 1.40 16 9 C -0.15 -3.12 9.23 -39.78 -0.37 -3.49 16 10 C -0.12 -2.78 8.63 -39.25 -0.34 -3.12 16 11 C 0.09 2.23 5.57 -106.80 -0.59 1.64 16 12 C -0.46 -11.59 9.03 -37.88 -0.34 -11.93 16 13 H 0.08 1.88 7.90 -52.49 -0.41 1.47 16 14 C 0.08 1.81 5.15 -17.34 -0.09 1.72 16 15 N -0.80 -19.61 10.96 55.54 0.61 -19.00 16 16 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 17 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 18 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 20 C -0.18 -4.27 9.50 -39.24 -0.37 -4.64 16 21 C -0.05 -1.08 6.30 -39.70 -0.25 -1.33 16 22 Cl -0.12 -2.32 27.55 -51.86 -1.43 -3.75 16 23 N -0.47 -6.62 11.55 -9.87 -0.11 -6.74 16 24 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.10 1.25 7.93 -51.93 -0.41 0.84 16 28 H 0.09 1.09 7.93 -51.93 -0.41 0.68 16 29 H 0.39 6.57 7.10 -40.82 -0.29 6.28 16 30 H 0.10 1.77 6.68 -52.49 -0.35 1.42 16 31 H 0.13 3.06 6.19 -52.48 -0.32 2.73 16 32 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 33 H 0.11 2.38 8.06 -52.48 -0.42 1.96 16 LS Contribution 306.78 15.07 4.62 4.62 Total: -1.00 -26.77 306.78 -8.08 -34.84 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -3.03 Total: 7.24 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -3.95 Total: -13.63 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.53 Total: -43.69 kcal Atomic # 8 Polarization: 1.18 SS G_CDS: 0.20 Total: 1.38 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -1.43 Total: -3.75 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.77 -8.08 -34.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453133796.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.992 kcal (2) G-P(sol) polarization free energy of solvation -26.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds