Wall clock time and date at job start Tue Mar 31 2020 07:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29954 * 126.28266 * 2 1 4 4 O 1.21295 * 110.24865 * 180.02562 * 3 2 1 5 5 C 1.33644 * 109.81282 * 359.97438 * 4 3 2 6 6 C 1.50707 * 126.55204 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.47186 * 270.02597 * 6 5 4 8 8 C 1.38899 * 119.99826 * 179.97438 * 7 6 5 9 9 C 1.39546 * 119.84482 * 0.02562 * 8 7 6 10 10 C 1.36343 * 120.16839 * 179.72791 * 9 8 7 11 11 C 1.40910 * 119.85957 * 0.26576 * 10 9 8 12 12 C 1.41123 * 120.15420 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00097 * 154.52607 * 12 11 10 14 14 C 1.39866 * 120.00384 * 334.53485 * 12 11 10 15 15 N 1.30904 * 119.99395 * 343.06551 * 14 12 11 16 16 Si 1.86795 * 120.00343 * 163.06135 * 14 12 11 17 17 H 1.48496 * 109.47165 * 59.99963 * 16 14 12 18 18 H 1.48501 * 109.47329 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46986 * 300.00268 * 16 14 12 20 20 C 1.40870 * 119.69303 * 0.02562 * 11 10 9 21 21 C 1.36429 * 119.83080 * 359.97438 * 20 11 10 22 22 Cl 1.73591 * 119.93180 * 180.02562 * 21 20 11 23 23 N 1.31133 * 106.89606 * 0.23128 * 5 4 3 24 24 H 1.08995 * 109.47257 * 89.98087 * 1 2 3 25 25 H 1.08995 * 109.46703 * 209.97736 * 1 2 3 26 26 H 1.09001 * 109.47006 * 329.97348 * 1 2 3 27 27 H 1.09000 * 109.46891 * 150.02590 * 6 5 4 28 28 H 1.08995 * 109.46775 * 30.02957 * 6 5 4 29 29 H 0.96997 * 120.00245 * 0.02562 * 7 6 5 30 30 H 1.08002 * 119.91624 * 359.97438 * 9 8 7 31 31 H 1.08005 * 120.07365 * 180.30176 * 10 9 8 32 32 H 0.97002 * 119.99976 * 180.02562 * 15 14 12 33 33 H 1.08003 * 120.08158 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0476 0.0000 4 8 3.4418 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7971 -1.4368 -0.0014 7 7 5.2067 -1.7009 -1.3829 8 6 6.3551 -2.4396 -1.6376 9 6 7.1158 -2.9291 -0.5750 10 6 8.2412 -3.6597 -0.8174 11 6 8.6391 -3.9157 -2.1447 12 6 9.8031 -4.6707 -2.4028 13 1 9.9006 -5.2120 -3.3322 14 6 10.8304 -4.7182 -1.4548 15 7 10.8787 -3.8272 -0.4970 16 14 12.1333 -6.0529 -1.5555 17 1 12.8474 -5.9507 -2.8535 18 1 13.1018 -5.8842 -0.4425 19 1 11.4861 -7.3853 -1.4502 20 6 7.8701 -3.4135 -3.2129 21 6 6.7463 -2.6840 -2.9559 22 17 5.7964 -2.0644 -4.2702 23 7 2.3030 -1.0840 -0.0047 24 1 -0.3633 0.0003 -1.0276 25 1 -0.3632 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5142 27 1 4.6211 -2.3819 0.5124 28 1 5.5846 -0.8852 0.5121 29 1 4.6765 -1.3593 -2.1198 30 1 6.8102 -2.7321 0.4419 31 1 8.8262 -4.0419 0.0061 32 1 11.5913 -3.8598 0.1603 33 1 8.1695 -3.6056 -4.2327 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453133796.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:56 Heat of formation + Delta-G solvation = 66.196167 kcal Electronic energy + Delta-G solvation = -19869.581031 eV Core-core repulsion = 16537.486705 eV Total energy + Delta-G solvation = -3332.094326 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.73830 -40.00709 -37.44453 -37.17038 -36.94070 -35.13141 -33.80531 -31.24881 -30.92134 -30.11272 -28.36910 -25.91921 -24.72077 -23.38222 -22.55542 -21.87626 -19.34467 -19.25224 -18.75744 -18.03327 -16.90695 -16.83733 -16.02172 -15.62283 -15.50715 -14.78791 -14.71855 -14.64704 -14.50991 -14.14081 -13.84498 -13.65001 -13.46040 -13.21749 -13.03767 -12.74830 -12.51920 -12.41447 -12.21785 -12.04397 -11.94962 -11.63586 -11.34693 -11.13169 -11.07770 -10.45360 -9.34789 -8.57737 -8.30786 -6.08291 -0.11623 0.95436 1.02951 1.04196 1.45032 1.51246 1.54769 1.58359 1.60707 2.28990 2.52152 2.77236 2.79380 2.97913 3.72862 3.78390 4.24962 4.29861 4.37667 4.52452 4.55463 4.68296 4.78074 4.80805 4.97364 5.05498 5.11080 5.35425 5.39124 5.51013 5.80535 6.08819 6.19344 6.47820 6.69949 6.83404 6.99563 7.01935 7.07470 8.44371 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.026960 B = 0.003455 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.308874 B = 8102.726007 C = 8826.803596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.163 3.837 3 N -0.404 5.404 4 O 0.074 5.926 5 C 0.184 3.816 6 C 0.230 3.770 7 N -0.749 5.749 8 C 0.119 3.881 9 C -0.151 4.151 10 C -0.132 4.132 11 C 0.057 3.943 12 C -0.499 4.499 13 H 0.070 0.930 14 C 0.039 3.961 15 N -0.830 5.830 16 Si 0.975 3.025 17 H -0.265 1.265 18 H -0.269 1.269 19 H -0.263 1.263 20 C -0.195 4.195 21 C -0.067 4.067 22 Cl -0.101 7.101 23 N -0.485 5.485 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.395 0.605 30 H 0.135 0.865 31 H 0.113 0.887 32 H 0.286 0.714 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.070 4.618 3.740 14.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 N -0.114 5.114 4 O 0.018 5.982 5 C -0.037 4.037 6 C 0.104 3.896 7 N -0.388 5.388 8 C 0.019 3.981 9 C -0.173 4.173 10 C -0.152 4.152 11 C 0.053 3.947 12 C -0.530 4.530 13 H 0.088 0.912 14 C -0.175 4.175 15 N -0.457 5.457 16 Si 0.797 3.203 17 H -0.190 1.190 18 H -0.194 1.194 19 H -0.187 1.187 20 C -0.216 4.216 21 C -0.098 4.098 22 Cl -0.073 7.073 23 N -0.220 5.220 24 H 0.120 0.880 25 H 0.123 0.877 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.229 0.771 30 H 0.153 0.847 31 H 0.131 0.869 32 H 0.097 0.903 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.647 5.276 4.034 15.177 hybrid contribution 0.718 -0.292 -0.655 1.015 sum -12.929 4.985 3.379 14.262 Atomic orbital electron populations 1.20385 0.79998 1.06039 1.05615 1.26751 1.02311 0.82798 0.99071 1.74655 0.89592 1.24722 1.22443 1.85307 1.22480 1.25008 1.65409 1.28932 0.97073 0.82020 0.95715 1.19682 0.86279 0.97319 0.86294 1.43711 1.27417 1.62312 1.05326 1.16927 0.90186 1.00117 0.90854 1.20300 0.96708 1.03254 0.97010 1.21033 0.96022 1.01127 0.97007 1.17693 0.92995 0.92560 0.91405 1.19560 1.01384 1.28085 1.03930 0.91191 1.26536 1.00331 0.96943 0.93693 1.69852 1.31954 1.30553 1.13360 0.85355 0.77287 0.78866 0.78814 1.19000 1.19379 1.18705 1.20545 0.97749 1.04764 0.98493 1.19917 0.96864 1.06904 0.86077 1.98240 1.72726 1.87102 1.49221 1.71988 1.00101 1.30020 1.19879 0.87956 0.87677 0.87983 0.86913 0.87177 0.77052 0.84733 0.86889 0.90301 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.51 71.24 0.75 -0.10 16 2 C 0.16 3.81 8.22 138.46 1.14 4.95 16 3 N -0.40 -10.65 12.16 -60.32 -0.73 -11.38 16 4 O 0.07 1.95 11.31 74.83 0.85 2.80 16 5 C 0.18 4.62 7.88 88.38 0.70 5.32 16 6 C 0.23 5.55 5.51 85.64 0.47 6.02 16 7 N -0.75 -23.26 5.65 -342.59 -1.94 -25.20 16 8 C 0.12 4.57 6.67 38.68 0.26 4.83 16 9 C -0.15 -6.01 9.23 22.14 0.20 -5.80 16 10 C -0.13 -6.28 8.63 22.48 0.19 -6.09 16 11 C 0.06 2.91 5.57 -21.27 -0.12 2.79 16 12 C -0.50 -26.03 9.03 23.37 0.21 -25.82 16 13 H 0.07 3.57 7.90 -2.91 -0.02 3.55 16 14 C 0.04 1.89 5.15 85.23 0.44 2.33 16 15 N -0.83 -41.40 10.96 21.82 0.24 -41.16 16 16 Si 0.97 37.38 29.59 68.60 2.03 39.41 16 17 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 18 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 19 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 20 C -0.19 -9.23 9.50 22.49 0.21 -9.02 16 21 C -0.07 -2.83 6.30 22.19 0.14 -2.69 16 22 Cl -0.10 -3.64 27.55 -2.72 -0.07 -3.71 16 23 N -0.48 -12.62 11.55 -303.19 -3.50 -16.13 16 24 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.11 2.50 7.93 -2.39 -0.02 2.48 16 28 H 0.11 2.31 7.93 -2.39 -0.02 2.29 16 29 H 0.39 12.30 7.10 -92.71 -0.66 11.64 16 30 H 0.13 4.35 6.68 -2.91 -0.02 4.33 16 31 H 0.11 5.62 6.19 -2.91 -0.02 5.60 16 32 H 0.29 13.00 8.30 -92.71 -0.77 12.24 16 33 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -58.05 306.78 1.98 -56.07 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.51 Total: 22.56 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 4.60 Total: -23.28 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -5.93 Total: -93.86 kcal Atomic # 8 Polarization: 1.95 SS G_CDS: 0.85 Total: 2.80 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Atomic # 17 Polarization: -3.64 SS G_CDS: -0.07 Total: -3.71 kcal Total: -58.05 1.98 -56.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453133796.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.268 kcal (2) G-P(sol) polarization free energy of solvation -58.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds