Wall clock time and date at job start Tue Mar 31 2020 06:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50704 * 119.99714 * 2 1 4 4 N 1.46494 * 109.47088 * 124.99797 * 3 2 1 5 5 C 1.46500 * 120.00425 * 269.99926 * 4 3 2 6 6 C 1.50708 * 109.46796 * 270.00218 * 5 4 3 7 7 H 1.07993 * 119.99909 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99488 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00453 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99521 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47137 * 60.00204 * 10 8 6 12 12 H 1.48504 * 109.46768 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47373 * 300.00255 * 10 8 6 14 14 C 1.38322 * 120.00114 * 89.99756 * 4 3 2 15 15 N 1.31636 * 127.50054 * 0.02562 * 14 4 3 16 16 C 1.31288 * 116.79289 * 179.97438 * 15 14 4 17 17 C 1.50703 * 121.06452 * 180.02562 * 16 15 14 18 18 F 1.39896 * 109.47124 * 195.00350 * 17 16 15 19 19 F 1.39898 * 109.46878 * 315.00347 * 17 16 15 20 20 F 1.39897 * 109.46556 * 75.00370 * 17 16 15 21 21 N 1.30133 * 117.87281 * 0.02562 * 16 15 14 22 22 S 1.69948 * 105.76450 * 359.97438 * 21 16 15 23 23 H 1.08001 * 119.99873 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.99765 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.99873 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47352 * 4.99692 * 3 2 1 27 27 H 1.09001 * 109.46427 * 244.99760 * 3 2 1 28 28 H 1.08998 * 109.47013 * 29.99474 * 5 4 3 29 29 H 1.08995 * 109.47461 * 150.00174 * 5 4 3 30 30 H 0.97001 * 120.00588 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3438 2.4803 7 1 3.3039 3.8370 1.6367 8 6 2.5183 4.0669 3.6081 9 7 1.9590 3.4662 4.6356 10 14 2.8727 5.8997 3.6771 11 1 2.1378 6.5874 2.5853 12 1 2.4318 6.4401 4.9882 13 1 4.3307 6.1286 3.5130 14 6 4.2827 0.8541 0.9785 15 7 4.8258 0.3471 -0.1081 16 6 6.0756 -0.0444 -0.0177 17 6 6.7922 -0.6383 -1.2030 18 9 7.9606 -1.2748 -0.7707 19 9 5.9594 -1.5696 -1.8326 20 9 7.1215 0.3782 -2.1060 21 7 6.6760 0.0967 1.1282 22 16 5.5269 0.7930 2.1688 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1317 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 1.4887 1.6968 2.5459 29 1 3.0989 1.3605 3.2259 30 1 1.7301 3.9748 5.4292 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488530093.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:44 Heat of formation + Delta-G solvation = -69.914259 kcal Electronic energy + Delta-G solvation = -21058.909612 eV Core-core repulsion = 17181.100061 eV Total energy + Delta-G solvation = -3877.809551 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.050 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.08699 -47.60225 -47.58343 -39.88169 -37.31738 -33.71212 -32.91380 -31.27707 -28.19474 -27.77118 -26.02339 -23.79528 -21.92347 -20.50110 -19.43915 -18.99294 -18.51173 -17.94542 -17.24876 -16.85912 -16.22728 -15.37333 -15.13260 -14.65833 -14.40138 -14.36700 -13.99614 -13.92132 -13.72523 -13.70523 -13.29901 -12.94589 -12.64191 -12.05335 -11.90103 -11.45054 -11.38655 -11.20522 -11.10756 -10.90111 -10.69448 -10.41653 -9.89019 -9.47726 -9.22413 -9.20420 -8.76924 -7.52217 -6.37983 -4.49485 0.92872 1.30937 1.72746 2.33577 2.61401 2.67204 3.14812 3.20377 3.21971 3.30141 3.78874 4.18529 4.22965 4.41207 4.94268 5.04305 5.19308 5.31384 5.58386 5.77413 5.94902 6.07482 6.42632 6.71563 6.74276 6.84556 7.13479 7.48462 7.55012 7.71559 7.86374 8.56253 9.19836 10.67864 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.016967 B = 0.005352 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.895122 B = 5230.090674 C = 6189.428796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.163 4.163 3 C 0.147 3.853 4 N -0.514 5.514 5 C 0.243 3.757 6 C -0.551 4.551 7 H 0.065 0.935 8 C 0.072 3.928 9 N -0.886 5.886 10 Si 0.902 3.098 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.273 1.273 14 C 0.355 3.645 15 N -0.584 5.584 16 C 0.224 3.776 17 C 0.567 3.433 18 F -0.160 7.160 19 F -0.161 7.161 20 F -0.165 7.165 21 N -0.496 5.496 22 S 0.260 5.740 23 H 0.100 0.900 24 H 0.096 0.904 25 H 0.107 0.893 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.114 -6.513 -8.028 10.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.183 4.183 3 C 0.023 3.977 4 N -0.225 5.225 5 C 0.125 3.875 6 C -0.590 4.590 7 H 0.084 0.916 8 C -0.133 4.133 9 N -0.523 5.523 10 Si 0.729 3.271 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.198 1.198 14 C -0.022 4.022 15 N -0.324 5.324 16 C -0.070 4.070 17 C 0.508 3.492 18 F -0.142 7.142 19 F -0.143 7.143 20 F -0.146 7.146 21 N -0.333 5.333 22 S 0.398 5.602 23 H 0.118 0.882 24 H 0.115 0.885 25 H 0.125 0.875 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.703 -6.409 -6.871 9.777 hybrid contribution -0.299 0.808 -0.878 1.230 sum 2.404 -5.600 -7.749 9.859 Atomic orbital electron populations 1.23835 0.95677 1.01904 1.00442 1.23314 0.96146 0.98920 0.99881 1.20757 0.91985 0.95713 0.89248 1.47091 1.03952 1.56739 1.14716 1.19840 0.97409 0.94531 0.75733 1.21337 1.43122 0.92353 1.02175 0.91647 1.24912 0.94176 0.99269 0.94955 1.69889 1.40271 1.36903 1.05204 0.86476 0.79185 0.83916 0.77559 1.19921 1.20864 1.19781 1.25081 0.93241 0.91532 0.92357 1.67007 1.09809 1.27411 1.28161 1.22398 0.89329 1.01654 0.93659 1.16758 0.76328 0.75907 0.80254 1.93235 1.49033 1.82235 1.89654 1.93232 1.71708 1.66177 1.83155 1.93237 1.92654 1.59910 1.68829 1.77150 1.25294 1.26476 1.04427 1.85354 0.98497 1.58000 1.18306 0.88216 0.88543 0.87505 0.88657 0.89281 0.92608 0.93991 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 14.32 29.01 0.42 -1.84 16 2 C -0.16 -2.34 9.85 -36.03 -0.35 -2.70 16 3 C 0.15 2.37 6.01 -5.19 -0.03 2.34 16 4 N -0.51 -9.80 2.54 -177.92 -0.45 -10.26 16 5 C 0.24 5.31 5.21 -5.19 -0.03 5.29 16 6 C -0.55 -13.37 9.39 -34.44 -0.32 -13.69 16 7 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -23.06 13.28 55.43 0.74 -22.32 16 10 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 11 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 14 C 0.35 6.85 7.94 -86.35 -0.69 6.17 16 15 N -0.58 -11.00 9.99 -14.57 -0.15 -11.15 16 16 C 0.22 4.09 6.97 -159.03 -1.11 2.98 16 17 C 0.57 8.97 3.53 36.01 0.13 9.10 16 18 F -0.16 -2.44 16.96 2.25 0.04 -2.40 16 19 F -0.16 -2.45 17.25 2.25 0.04 -2.41 16 20 F -0.16 -2.55 17.30 2.25 0.04 -2.51 16 21 N -0.50 -9.36 11.73 29.54 0.35 -9.01 16 22 S 0.26 4.93 22.61 -107.50 -2.43 2.50 16 23 H 0.10 1.18 7.84 -52.49 -0.41 0.77 16 24 H 0.10 1.05 8.06 -52.49 -0.42 0.62 16 25 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 26 H 0.10 1.49 7.72 -51.93 -0.40 1.09 16 27 H 0.09 1.41 7.73 -51.93 -0.40 1.01 16 28 H 0.06 1.26 8.07 -51.93 -0.42 0.84 16 29 H 0.04 0.97 7.23 -51.93 -0.38 0.59 16 30 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 302.02 15.07 4.55 4.55 Total: -1.00 -25.41 302.02 -6.78 -32.19 By element: Atomic # 1 Polarization: -0.71 SS G_CDS: -2.40 Total: -3.11 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -2.09 Total: 9.33 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.49 Total: -52.74 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 0.12 Total: -7.32 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -2.43 Total: 2.50 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -25.41 -6.78 -32.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488530093.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.727 kcal (2) G-P(sol) polarization free energy of solvation -25.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds