Wall clock time and date at job start Tue Mar 31 2020 06:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50704 * 119.99714 * 2 1 4 4 N 1.46494 * 109.47088 * 124.99797 * 3 2 1 5 5 C 1.46500 * 120.00425 * 269.99926 * 4 3 2 6 6 C 1.50708 * 109.46796 * 270.00218 * 5 4 3 7 7 H 1.07993 * 119.99909 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99488 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00453 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99521 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47137 * 60.00204 * 10 8 6 12 12 H 1.48504 * 109.46768 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47373 * 300.00255 * 10 8 6 14 14 C 1.38322 * 120.00114 * 89.99756 * 4 3 2 15 15 N 1.31636 * 127.50054 * 0.02562 * 14 4 3 16 16 C 1.31288 * 116.79289 * 179.97438 * 15 14 4 17 17 C 1.50703 * 121.06452 * 180.02562 * 16 15 14 18 18 F 1.39896 * 109.47124 * 195.00350 * 17 16 15 19 19 F 1.39898 * 109.46878 * 315.00347 * 17 16 15 20 20 F 1.39897 * 109.46556 * 75.00370 * 17 16 15 21 21 N 1.30133 * 117.87281 * 0.02562 * 16 15 14 22 22 S 1.69948 * 105.76450 * 359.97438 * 21 16 15 23 23 H 1.08001 * 119.99873 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.99765 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.99873 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47352 * 4.99692 * 3 2 1 27 27 H 1.09001 * 109.46427 * 244.99760 * 3 2 1 28 28 H 1.08998 * 109.47013 * 29.99474 * 5 4 3 29 29 H 1.08995 * 109.47461 * 150.00174 * 5 4 3 30 30 H 0.97001 * 120.00588 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3438 2.4803 7 1 3.3039 3.8370 1.6367 8 6 2.5183 4.0669 3.6081 9 7 1.9590 3.4662 4.6356 10 14 2.8727 5.8997 3.6771 11 1 2.1378 6.5874 2.5853 12 1 2.4318 6.4401 4.9882 13 1 4.3307 6.1286 3.5130 14 6 4.2827 0.8541 0.9785 15 7 4.8258 0.3471 -0.1081 16 6 6.0756 -0.0444 -0.0177 17 6 6.7922 -0.6383 -1.2030 18 9 7.9606 -1.2748 -0.7707 19 9 5.9594 -1.5696 -1.8326 20 9 7.1215 0.3782 -2.1060 21 7 6.6760 0.0967 1.1282 22 16 5.5269 0.7930 2.1688 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1317 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 1.4887 1.6968 2.5459 29 1 3.0989 1.3605 3.2259 30 1 1.7301 3.9748 5.4292 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488530093.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:43 Heat of formation + Delta-G solvation = -81.592344 kcal Electronic energy + Delta-G solvation = -21059.416012 eV Core-core repulsion = 17181.100061 eV Total energy + Delta-G solvation = -3878.315950 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.050 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.34767 -48.85809 -48.83141 -41.36178 -38.78754 -35.21509 -34.47543 -32.80726 -29.77235 -29.22908 -27.41760 -25.48414 -23.42369 -21.82133 -20.67153 -20.42338 -19.77770 -19.32459 -18.69595 -18.63048 -17.72386 -16.88686 -16.61747 -16.13632 -15.70102 -15.61359 -15.34088 -15.24162 -14.96987 -14.94924 -14.74470 -14.34029 -14.18353 -13.63543 -13.45576 -12.99751 -12.84584 -12.71071 -12.63567 -12.53017 -12.22779 -11.98575 -11.65009 -10.92816 -10.76206 -10.66565 -10.36456 -9.06920 -8.26426 -6.44646 -0.56756 -0.17948 0.28590 1.08249 1.14505 1.37273 1.42528 1.45048 1.51613 1.91773 2.33942 2.43324 2.93131 3.03952 3.12819 3.67593 4.00104 4.07520 4.26718 4.43986 4.73825 4.76793 4.98270 5.02283 5.40967 5.64996 5.67524 5.84521 5.85999 5.94477 6.32992 6.66620 7.27590 8.77272 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.016967 B = 0.005352 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.895122 B = 5230.090674 C = 6189.428796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.184 4.184 3 C 0.147 3.853 4 N -0.516 5.516 5 C 0.258 3.742 6 C -0.556 4.556 7 H 0.059 0.941 8 C 0.031 3.969 9 N -0.914 5.914 10 Si 0.955 3.045 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.274 1.274 14 C 0.349 3.651 15 N -0.584 5.584 16 C 0.219 3.781 17 C 0.577 3.423 18 F -0.155 7.155 19 F -0.155 7.155 20 F -0.160 7.160 21 N -0.501 5.501 22 S 0.248 5.752 23 H 0.107 0.893 24 H 0.118 0.882 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.028 0.972 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.783 -6.427 -8.871 11.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.204 4.204 3 C 0.024 3.976 4 N -0.227 5.227 5 C 0.138 3.862 6 C -0.595 4.595 7 H 0.077 0.923 8 C -0.171 4.171 9 N -0.552 5.552 10 Si 0.780 3.220 11 H -0.193 1.193 12 H -0.205 1.205 13 H -0.200 1.200 14 C -0.028 4.028 15 N -0.324 5.324 16 C -0.076 4.076 17 C 0.517 3.483 18 F -0.136 7.136 19 F -0.136 7.136 20 F -0.142 7.142 21 N -0.338 5.338 22 S 0.387 5.613 23 H 0.126 0.874 24 H 0.136 0.864 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.371 -6.332 -7.745 10.281 hybrid contribution -0.227 0.739 -0.655 1.013 sum 2.144 -5.594 -8.400 10.317 Atomic orbital electron populations 1.24084 0.95003 1.03305 0.97136 1.23129 0.96723 0.97702 1.02862 1.20893 0.91660 0.96953 0.88094 1.47029 1.04372 1.56609 1.14663 1.19454 0.96640 0.93360 0.76729 1.21536 1.42547 0.93560 1.01837 0.92319 1.25569 0.94108 1.02695 0.94757 1.69967 1.41322 1.38189 1.05688 0.85644 0.78767 0.79895 0.77697 1.19279 1.20534 1.19962 1.25181 0.93339 0.91733 0.92584 1.67044 1.10052 1.27401 1.27874 1.22850 0.89263 1.01183 0.94284 1.16472 0.76294 0.75956 0.79569 1.93251 1.48635 1.82079 1.89624 1.93249 1.71615 1.65878 1.82881 1.93249 1.92587 1.59856 1.68485 1.77173 1.25195 1.26786 1.04637 1.85359 0.98842 1.58352 1.18770 0.87443 0.86427 0.88060 0.88415 0.89201 0.93305 0.95368 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 14.32 67.78 0.97 -2.60 16 2 C -0.18 -5.07 9.85 25.64 0.25 -4.81 16 3 C 0.15 4.62 6.01 85.64 0.51 5.14 16 4 N -0.52 -19.52 2.54 -716.83 -1.82 -21.34 16 5 C 0.26 11.28 5.21 85.64 0.45 11.73 16 6 C -0.56 -26.85 9.39 25.60 0.24 -26.61 16 7 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 8 C 0.03 1.52 5.46 84.66 0.46 1.98 16 9 N -0.91 -47.47 13.28 21.45 0.28 -47.19 16 10 Si 0.95 39.68 29.54 68.60 2.03 41.71 16 11 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 12 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 13 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 14 C 0.35 13.35 7.94 178.86 1.42 14.77 16 15 N -0.58 -21.52 9.99 -200.02 -2.00 -23.52 16 16 C 0.22 7.75 6.97 139.39 0.97 8.72 16 17 C 0.58 17.37 3.53 71.24 0.25 17.62 16 18 F -0.15 -4.46 16.96 44.97 0.76 -3.70 16 19 F -0.15 -4.43 17.25 44.97 0.78 -3.66 16 20 F -0.16 -4.69 17.30 44.97 0.78 -3.91 16 21 N -0.50 -18.53 11.73 -60.44 -0.71 -19.24 16 22 S 0.25 9.40 22.61 -56.49 -1.28 8.12 16 23 H 0.11 2.28 7.84 -2.91 -0.02 2.26 16 24 H 0.12 2.19 8.06 -2.91 -0.02 2.16 16 25 H 0.10 2.90 8.06 -2.91 -0.02 2.87 16 26 H 0.10 2.98 7.72 -2.39 -0.02 2.96 16 27 H 0.09 2.77 7.73 -2.39 -0.02 2.75 16 28 H 0.05 2.21 8.07 -2.39 -0.02 2.19 16 29 H 0.03 1.32 7.23 -2.39 -0.02 1.30 16 30 H 0.27 13.45 8.31 -92.71 -0.77 12.67 16 Total: -1.00 -51.82 302.02 5.54 -46.28 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: 1.18 Total: 0.51 kcal Atomic # 6 Polarization: 20.41 SS G_CDS: 5.53 Total: 25.94 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -4.24 Total: -111.28 kcal Atomic # 9 Polarization: -13.59 SS G_CDS: 2.32 Total: -11.27 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Atomic # 16 Polarization: 9.40 SS G_CDS: -1.28 Total: 8.12 kcal Total: -51.82 5.54 -46.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488530093.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.315 kcal (2) G-P(sol) polarization free energy of solvation -51.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds