Wall clock time and date at job start Tue Mar 31 2020 06:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46878 * 187.54614 * 3 2 1 5 5 C 1.37096 * 120.00305 * 269.99793 * 4 3 2 6 6 H 1.08001 * 120.00125 * 202.67592 * 5 4 3 7 7 C 1.38955 * 119.99624 * 22.67076 * 5 4 3 8 8 N 1.31415 * 120.00253 * 352.44555 * 7 5 4 9 9 Si 1.86800 * 119.99769 * 172.43830 * 7 5 4 10 10 H 1.48498 * 109.47210 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47067 * 120.00223 * 9 7 5 12 12 H 1.48503 * 109.47390 * 240.00492 * 9 7 5 13 13 C 1.34779 * 119.99864 * 90.00102 * 4 3 2 14 14 O 1.21296 * 119.99630 * 5.10051 * 13 4 3 15 15 C 1.50698 * 120.00100 * 185.10326 * 13 4 3 16 16 C 1.50695 * 109.47008 * 174.92946 * 15 13 4 17 17 C 1.38264 * 119.95071 * 265.01654 * 16 15 13 18 18 C 1.38133 * 120.06800 * 180.02562 * 17 16 15 19 19 C 1.38756 * 119.97203 * 0.02562 * 18 17 16 20 20 O 1.35899 * 120.05100 * 180.02562 * 19 18 17 21 21 C 1.38691 * 119.90190 * 359.70507 * 19 18 17 22 22 C 1.38280 * 119.92908 * 0.56653 * 21 19 18 23 23 Cl 1.73600 * 119.98455 * 179.72271 * 22 21 19 24 24 H 4.40645 * 5.51452 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.46837 * 67.54837 * 3 2 1 26 26 H 1.09003 * 109.46810 * 307.54893 * 3 2 1 27 27 H 0.96995 * 120.00014 * 185.01143 * 8 7 5 28 28 H 1.08999 * 109.47002 * 54.92585 * 15 13 4 29 29 H 1.08999 * 109.46620 * 294.92795 * 15 13 4 30 30 H 1.07997 * 119.96682 * 0.02649 * 17 16 15 31 31 H 1.08006 * 120.01299 * 180.02562 * 18 17 16 32 32 H 0.96699 * 113.99796 * 89.99862 * 20 19 18 33 33 H 1.07999 * 120.03593 * 180.32184 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3702 0.1814 5 6 3.3619 2.1669 -0.9107 6 1 4.0406 3.0037 -0.8363 7 6 2.7200 1.8977 -2.1133 8 7 2.0124 0.7986 -2.2488 9 14 2.8628 3.0981 -3.5374 10 1 3.7098 4.2485 -3.1320 11 1 3.4818 2.4142 -4.7011 12 1 1.5109 3.5857 -3.9114 13 6 3.3581 1.8468 1.4220 14 8 3.2456 1.1146 2.3824 15 6 3.7488 3.2893 1.6157 16 6 3.8181 3.5974 3.0892 17 6 2.7253 4.1500 3.7310 18 6 2.7863 4.4339 5.0815 19 6 3.9457 4.1646 5.7947 20 8 4.0074 4.4428 7.1235 21 6 5.0393 3.6051 5.1509 22 6 4.9757 3.3278 3.7977 23 17 6.3462 2.6341 2.9888 24 1 -1.0502 -0.0004 -0.0002 25 1 3.0095 -0.3917 -0.9498 26 1 3.0096 -0.6255 0.8148 27 1 1.6247 0.5744 -3.1092 28 1 3.0064 3.9332 1.1443 29 1 4.7237 3.4658 1.1613 30 1 1.8230 4.3600 3.1759 31 1 1.9320 4.8652 5.5820 32 1 3.7242 3.7132 7.6915 33 1 5.9410 3.3898 5.7050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491022964.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:48 Heat of formation + Delta-G solvation = 9.728582 kcal Electronic energy + Delta-G solvation = -20647.545147 eV Core-core repulsion = 17280.709452 eV Total energy + Delta-G solvation = -3366.835695 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.83599 -38.58225 -37.00942 -35.92061 -35.07004 -32.06668 -31.65519 -31.14556 -30.65291 -27.38820 -25.83677 -24.31366 -22.75229 -21.63363 -19.25949 -18.46353 -17.79307 -16.63184 -16.23395 -16.07250 -15.71586 -15.15559 -14.37172 -14.33496 -14.13216 -13.87490 -13.47337 -13.14269 -12.82446 -12.41971 -12.15986 -11.97260 -11.52070 -11.31699 -11.23200 -11.11789 -10.95910 -10.70401 -10.56861 -10.48594 -10.42126 -9.54382 -9.24247 -8.78996 -8.64439 -8.52275 -8.16869 -7.91883 -6.35099 -4.05151 1.26039 1.34733 2.38402 3.05993 3.16769 3.19514 3.56805 3.76004 3.93953 4.11664 4.25727 4.32098 4.91066 4.94651 4.99645 5.12541 5.21817 5.48432 5.67782 5.72629 5.87952 6.01115 6.16266 6.24816 6.31574 6.40944 6.66830 6.72597 6.80836 7.10234 7.24232 7.32853 7.60291 7.68193 8.30541 8.97914 9.01557 9.40873 9.81105 10.58543 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.019449 B = 0.004885 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.341622 B = 5731.034011 C = 6106.824844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.084 4.084 3 C 0.237 3.763 4 N -0.443 5.443 5 C -0.339 4.339 6 H 0.100 0.900 7 C 0.040 3.960 8 N -0.862 5.862 9 Si 0.923 3.077 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.472 3.528 14 O -0.595 6.595 15 C -0.092 4.092 16 C -0.042 4.042 17 C -0.084 4.084 18 C -0.140 4.140 19 C 0.101 3.899 20 O -0.498 6.498 21 C -0.139 4.139 22 C -0.003 4.003 23 Cl -0.062 7.062 24 H 0.196 0.804 25 H 0.121 0.879 26 H 0.062 0.938 27 H 0.270 0.730 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.389 0.611 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.848 5.242 8.952 10.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.086 4.086 3 C 0.114 3.886 4 N -0.161 5.161 5 C -0.466 4.466 6 H 0.117 0.883 7 C -0.165 4.165 8 N -0.500 5.500 9 Si 0.750 3.250 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.206 1.206 13 C 0.261 3.739 14 O -0.480 6.480 15 C -0.132 4.132 16 C -0.044 4.044 17 C -0.102 4.102 18 C -0.158 4.158 19 C 0.057 3.943 20 O -0.308 6.308 21 C -0.158 4.158 22 C -0.030 4.030 23 Cl -0.033 7.033 24 H 0.213 0.787 25 H 0.139 0.861 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.152 0.848 31 H 0.148 0.852 32 H 0.244 0.756 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.992 5.288 8.980 10.842 hybrid contribution -0.356 0.071 -0.906 0.976 sum 2.636 5.359 8.073 10.042 Atomic orbital electron populations 1.24170 0.95322 1.03145 1.08522 1.23251 0.94386 0.97338 0.93633 1.18290 0.83929 0.84433 1.01905 1.43618 1.56785 1.11164 1.04554 1.19683 1.25715 1.11855 0.89348 0.88251 1.25379 0.94605 0.97026 0.99538 1.69961 1.32647 1.22609 1.24786 0.85919 0.78164 0.80326 0.80611 1.19238 1.20651 1.20602 1.19848 0.82544 0.88532 0.83025 1.90562 1.58134 1.59280 1.40037 1.20555 1.04452 0.97267 0.90885 1.19533 0.91906 0.96589 0.96324 1.20884 0.97711 0.97704 0.93890 1.21393 0.97516 1.02090 0.94841 1.18146 0.92876 0.99269 0.84042 1.84811 1.89296 1.42818 1.13878 1.21154 1.00027 1.01389 0.93202 1.20520 0.89889 1.00205 0.92399 1.98362 1.42406 1.83019 1.79471 0.78734 0.86149 0.92005 0.91903 0.88318 0.88563 0.84753 0.85165 0.75576 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.65 19.25 29.55 0.57 -6.08 16 2 C -0.08 -2.08 11.37 -37.12 -0.42 -2.50 16 3 C 0.24 5.78 5.21 -6.83 -0.04 5.75 16 4 N -0.44 -10.86 2.58 -117.93 -0.30 -11.17 16 5 C -0.34 -8.18 9.01 -14.93 -0.13 -8.32 16 6 H 0.10 2.25 6.71 -52.49 -0.35 1.90 16 7 C 0.04 0.96 5.40 -17.46 -0.09 0.86 16 8 N -0.86 -21.68 8.37 55.50 0.46 -21.21 16 9 Si 0.92 18.90 29.56 -169.99 -5.03 13.87 16 10 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 12 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.47 10.99 7.61 -10.99 -0.08 10.91 16 14 O -0.59 -15.14 15.58 5.54 0.09 -15.06 16 15 C -0.09 -1.76 3.89 -29.04 -0.11 -1.88 16 16 C -0.04 -0.74 4.39 -104.57 -0.46 -1.20 16 17 C -0.08 -1.30 9.67 -39.61 -0.38 -1.68 16 18 C -0.14 -1.91 9.99 -39.43 -0.39 -2.31 16 19 C 0.10 1.39 6.70 -39.22 -0.26 1.13 16 20 O -0.50 -5.70 13.50 -19.42 -0.26 -5.96 16 21 C -0.14 -2.03 9.77 -39.40 -0.38 -2.42 16 22 C 0.00 -0.05 6.29 -39.52 -0.25 -0.30 16 23 Cl -0.06 -1.02 27.39 -51.86 -1.42 -2.44 16 24 H 0.20 3.63 7.80 -54.08 -0.42 3.21 16 25 H 0.12 3.01 6.29 -51.93 -0.33 2.68 16 26 H 0.06 1.48 7.36 -51.93 -0.38 1.10 16 27 H 0.27 6.52 8.32 -40.82 -0.34 6.19 16 28 H 0.10 1.79 7.95 -51.93 -0.41 1.38 16 29 H 0.10 1.77 6.71 -51.93 -0.35 1.43 16 30 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 32 H 0.39 2.62 9.06 45.56 0.41 3.04 16 33 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 311.25 15.07 4.69 4.69 Total: -1.00 -29.89 311.25 -6.45 -36.34 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -2.23 Total: 8.98 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -2.45 Total: -8.04 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.16 Total: -32.38 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.18 Total: -21.02 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.42 Total: -2.44 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.89 -6.45 -36.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491022964.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.067 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds