Wall clock time and date at job start Tue Mar 31 2020 06:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46878 * 187.54614 * 3 2 1 5 5 C 1.37096 * 120.00305 * 269.99793 * 4 3 2 6 6 H 1.08001 * 120.00125 * 202.67592 * 5 4 3 7 7 C 1.38955 * 119.99624 * 22.67076 * 5 4 3 8 8 N 1.31415 * 120.00253 * 352.44555 * 7 5 4 9 9 Si 1.86800 * 119.99769 * 172.43830 * 7 5 4 10 10 H 1.48498 * 109.47210 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47067 * 120.00223 * 9 7 5 12 12 H 1.48503 * 109.47390 * 240.00492 * 9 7 5 13 13 C 1.34779 * 119.99864 * 90.00102 * 4 3 2 14 14 O 1.21296 * 119.99630 * 5.10051 * 13 4 3 15 15 C 1.50698 * 120.00100 * 185.10326 * 13 4 3 16 16 C 1.50695 * 109.47008 * 174.92946 * 15 13 4 17 17 C 1.38264 * 119.95071 * 265.01654 * 16 15 13 18 18 C 1.38133 * 120.06800 * 180.02562 * 17 16 15 19 19 C 1.38756 * 119.97203 * 0.02562 * 18 17 16 20 20 O 1.35899 * 120.05100 * 180.02562 * 19 18 17 21 21 C 1.38691 * 119.90190 * 359.70507 * 19 18 17 22 22 C 1.38280 * 119.92908 * 0.56653 * 21 19 18 23 23 Cl 1.73600 * 119.98455 * 179.72271 * 22 21 19 24 24 H 4.40645 * 5.51452 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.46837 * 67.54837 * 3 2 1 26 26 H 1.09003 * 109.46810 * 307.54893 * 3 2 1 27 27 H 0.96995 * 120.00014 * 185.01143 * 8 7 5 28 28 H 1.08999 * 109.47002 * 54.92585 * 15 13 4 29 29 H 1.08999 * 109.46620 * 294.92795 * 15 13 4 30 30 H 1.07997 * 119.96682 * 0.02649 * 17 16 15 31 31 H 1.08006 * 120.01299 * 180.02562 * 18 17 16 32 32 H 0.96699 * 113.99796 * 89.99862 * 20 19 18 33 33 H 1.07999 * 120.03593 * 180.32184 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3702 0.1814 5 6 3.3619 2.1669 -0.9107 6 1 4.0406 3.0037 -0.8363 7 6 2.7200 1.8977 -2.1133 8 7 2.0124 0.7986 -2.2488 9 14 2.8628 3.0981 -3.5374 10 1 3.7098 4.2485 -3.1320 11 1 3.4818 2.4142 -4.7011 12 1 1.5109 3.5857 -3.9114 13 6 3.3581 1.8468 1.4220 14 8 3.2456 1.1146 2.3824 15 6 3.7488 3.2893 1.6157 16 6 3.8181 3.5974 3.0892 17 6 2.7253 4.1500 3.7310 18 6 2.7863 4.4339 5.0815 19 6 3.9457 4.1646 5.7947 20 8 4.0074 4.4428 7.1235 21 6 5.0393 3.6051 5.1509 22 6 4.9757 3.3278 3.7977 23 17 6.3462 2.6341 2.9888 24 1 -1.0502 -0.0004 -0.0002 25 1 3.0095 -0.3917 -0.9498 26 1 3.0096 -0.6255 0.8148 27 1 1.6247 0.5744 -3.1092 28 1 3.0064 3.9332 1.1443 29 1 4.7237 3.4658 1.1613 30 1 1.8230 4.3600 3.1759 31 1 1.9320 4.8652 5.5820 32 1 3.7242 3.7132 7.6915 33 1 5.9410 3.3898 5.7050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491022964.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:47 Heat of formation + Delta-G solvation = -7.890204 kcal Electronic energy + Delta-G solvation = -20648.309155 eV Core-core repulsion = 17280.709452 eV Total energy + Delta-G solvation = -3367.599703 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.10883 -40.18451 -38.16473 -37.19846 -36.82299 -33.77993 -33.41618 -32.69944 -31.79625 -28.98159 -27.49478 -26.06289 -23.89745 -22.87252 -21.04081 -19.58227 -19.43918 -18.40089 -17.99026 -17.28179 -16.89857 -16.41880 -16.04662 -15.91281 -15.85188 -15.14092 -14.75010 -14.59330 -14.39301 -13.88366 -13.80088 -13.45060 -13.08006 -12.93612 -12.84819 -12.51570 -12.44848 -12.25880 -12.04991 -11.77879 -11.56871 -11.36985 -11.09780 -10.53326 -10.34226 -9.85527 -9.80054 -9.44134 -8.17742 -5.93969 0.10136 0.20508 1.15348 1.43212 1.50141 1.61448 1.93189 2.13119 2.35548 2.45811 2.49550 3.15811 3.26003 3.29758 3.77764 3.84484 3.97119 4.06523 4.30511 4.42480 4.53656 4.64705 4.80992 4.83561 4.92382 5.08961 5.18630 5.29125 5.43803 5.45131 5.48314 5.68143 5.84335 6.44093 6.81213 7.12953 7.16970 7.57961 7.98029 8.75708 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.019449 B = 0.004885 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.341622 B = 5731.034011 C = 6106.824844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.131 4.131 3 C 0.240 3.760 4 N -0.455 5.455 5 C -0.353 4.353 6 H 0.111 0.889 7 C -0.001 4.001 8 N -0.886 5.886 9 Si 0.989 3.011 10 H -0.255 1.255 11 H -0.281 1.281 12 H -0.285 1.285 13 C 0.466 3.534 14 O -0.621 6.621 15 C -0.080 4.080 16 C -0.071 4.071 17 C -0.090 4.090 18 C -0.136 4.136 19 C 0.114 3.886 20 O -0.498 6.498 21 C -0.145 4.145 22 C -0.018 4.018 23 Cl -0.072 7.072 24 H 0.233 0.767 25 H 0.108 0.892 26 H 0.054 0.946 27 H 0.268 0.732 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.144 0.856 31 H 0.159 0.841 32 H 0.412 0.588 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.195 6.843 9.810 12.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.132 4.132 3 C 0.117 3.883 4 N -0.174 5.174 5 C -0.480 4.480 6 H 0.129 0.871 7 C -0.204 4.204 8 N -0.524 5.524 9 Si 0.813 3.187 10 H -0.179 1.179 11 H -0.207 1.207 12 H -0.211 1.211 13 C 0.256 3.744 14 O -0.509 6.509 15 C -0.120 4.120 16 C -0.072 4.072 17 C -0.109 4.109 18 C -0.155 4.155 19 C 0.069 3.931 20 O -0.312 6.312 21 C -0.164 4.164 22 C -0.045 4.045 23 Cl -0.043 7.043 24 H 0.250 0.750 25 H 0.126 0.874 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.162 0.838 31 H 0.177 0.823 32 H 0.272 0.728 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.348 6.884 9.860 12.253 hybrid contribution -0.194 -0.462 -1.034 1.149 sum 2.155 6.423 8.826 11.126 Atomic orbital electron populations 1.25074 0.96303 1.01294 1.06557 1.23551 0.95096 0.99147 0.95448 1.18113 0.84516 0.84847 1.00783 1.43851 1.57009 1.11198 1.05304 1.20024 1.26270 1.12150 0.89548 0.87136 1.26163 0.94227 0.98285 1.01694 1.70100 1.33276 1.23871 1.25109 0.84923 0.77791 0.78572 0.77434 1.17865 1.20652 1.21148 1.20523 0.81617 0.90039 0.82203 1.90523 1.59159 1.60459 1.40740 1.20425 1.04532 0.94278 0.92758 1.19524 0.93258 0.98910 0.95517 1.21081 0.97410 0.97481 0.94887 1.21679 0.98454 1.01239 0.94082 1.18200 0.92307 0.97561 0.85045 1.84758 1.89396 1.44109 1.12909 1.21370 1.01172 1.01349 0.92478 1.20686 0.89602 1.00899 0.93273 1.98350 1.42818 1.83281 1.79812 0.75020 0.87423 0.92829 0.92137 0.87623 0.88298 0.83819 0.82310 0.72799 0.83260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.17 19.25 74.32 1.43 -10.74 16 2 C -0.13 -6.52 11.37 31.13 0.35 -6.16 16 3 C 0.24 12.11 5.21 84.57 0.44 12.55 16 4 N -0.46 -22.74 2.58 -645.40 -1.67 -24.41 16 5 C -0.35 -17.11 9.01 84.04 0.76 -16.35 16 6 H 0.11 4.97 6.71 -2.91 -0.02 4.95 16 7 C 0.00 -0.06 5.40 84.93 0.46 0.40 16 8 N -0.89 -44.87 8.37 21.67 0.18 -44.69 16 9 Si 0.99 38.30 29.56 68.60 2.03 40.33 16 10 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 11 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 12 H -0.29 -11.24 7.11 99.48 0.71 -10.54 16 13 C 0.47 22.02 7.61 87.66 0.67 22.68 16 14 O -0.62 -32.25 15.58 -3.08 -0.05 -32.29 16 15 C -0.08 -3.08 3.89 29.10 0.11 -2.97 16 16 C -0.07 -2.45 4.39 -19.83 -0.09 -2.53 16 17 C -0.09 -2.66 9.67 22.25 0.22 -2.45 16 18 C -0.14 -3.35 9.99 22.37 0.22 -3.13 16 19 C 0.11 2.81 6.70 22.50 0.15 2.96 16 20 O -0.50 -9.66 13.50 -92.42 -1.25 -10.91 16 21 C -0.14 -4.00 9.77 22.39 0.22 -3.78 16 22 C -0.02 -0.59 6.29 22.31 0.14 -0.45 16 23 Cl -0.07 -2.38 27.39 -2.72 -0.07 -2.46 16 24 H 0.23 8.04 7.80 -4.41 -0.03 8.00 16 25 H 0.11 5.61 6.29 -2.39 -0.02 5.60 16 26 H 0.05 2.70 7.36 -2.39 -0.02 2.69 16 27 H 0.27 13.05 8.32 -92.71 -0.77 12.28 16 28 H 0.11 3.81 7.95 -2.39 -0.02 3.79 16 29 H 0.10 3.66 6.71 -2.39 -0.02 3.65 16 30 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 31 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 32 H 0.41 4.03 9.06 -74.06 -0.67 3.36 16 33 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -63.77 311.25 4.74 -59.03 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.49 Total: 25.37 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 5.08 Total: -9.97 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -1.49 Total: -69.10 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -1.30 Total: -43.20 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.07 Total: -2.46 kcal Total: -63.77 4.74 -59.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491022964.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.135 kcal (2) G-P(sol) polarization free energy of solvation -63.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds