Wall clock time and date at job start Tue Mar 31 2020 06:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47403 * 44.34983 * 3 2 1 5 5 C 1.36942 * 119.99789 * 264.64314 * 4 3 2 6 6 H 1.07997 * 119.99893 * 196.38011 * 5 4 3 7 7 C 1.38816 * 120.00040 * 16.37348 * 5 4 3 8 8 N 1.31616 * 119.99652 * 22.66838 * 7 5 4 9 9 Si 1.86797 * 119.99998 * 202.66526 * 7 5 4 10 10 H 1.48506 * 109.47057 * 90.00590 * 9 7 5 11 11 H 1.48505 * 109.46884 * 210.00062 * 9 7 5 12 12 H 1.48494 * 109.47235 * 330.00536 * 9 7 5 13 13 C 1.46494 * 120.00115 * 84.64516 * 4 3 2 14 14 C 1.50710 * 109.46906 * 269.99755 * 13 4 3 15 15 C 1.38271 * 119.91825 * 90.00260 * 14 13 4 16 16 C 1.38544 * 120.04412 * 180.02562 * 15 14 13 17 17 C 1.39258 * 119.83907 * 359.96797 * 16 15 14 18 18 C 1.38602 * 119.82177 * 0.02562 * 17 16 15 19 19 Cl 1.73600 * 119.99430 * 180.02562 * 18 17 16 20 20 C 1.38203 * 119.92123 * 269.97814 * 14 13 4 21 21 O 1.36521 * 108.64033 * 179.97438 * 17 16 15 22 22 C 1.43995 * 105.47738 * 17.27264 * 21 17 16 23 23 O 1.36497 * 131.51718 * 179.97438 * 16 15 14 24 24 H 4.40642 * 5.51451 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47160 * 284.34523 * 3 2 1 26 26 H 1.09007 * 109.47241 * 164.34774 * 3 2 1 27 27 H 0.97001 * 120.00039 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.46967 * 150.00227 * 13 4 3 29 29 H 1.08997 * 109.47374 * 29.99823 * 13 4 3 30 30 H 1.07994 * 119.98065 * 0.02562 * 15 14 13 31 31 H 1.07997 * 119.94336 * 0.02562 * 20 14 13 32 32 H 1.09000 * 110.56926 * 214.32118 * 22 21 17 33 33 H 1.08998 * 110.57140 * 91.45352 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -0.9868 -0.9655 5 6 3.4680 -2.2473 -0.5466 6 1 4.0666 -2.8859 -1.1791 7 6 3.0364 -2.7040 0.6912 8 7 1.9823 -2.1608 1.2621 9 14 3.9517 -4.0897 1.5465 10 1 5.0200 -3.5204 2.4067 11 1 3.0030 -4.8665 2.3843 12 1 4.5598 -4.9836 0.5285 13 6 3.2672 -0.6258 -2.3791 14 6 1.9790 -0.9327 -3.0987 15 6 0.9903 0.0302 -3.1837 16 6 -0.1951 -0.2493 -3.8441 17 6 -0.3876 -1.5014 -4.4222 18 6 0.6076 -2.4620 -4.3335 19 17 0.3726 -4.0242 -5.0531 20 6 1.7890 -2.1755 -3.6724 21 8 -1.6216 -1.5276 -5.0057 22 6 -2.0159 -0.1485 -5.1327 23 8 -1.3079 0.5095 -4.0658 24 1 -1.0499 -0.0004 -0.0001 25 1 3.0094 -0.2538 0.9956 26 1 3.0089 0.9904 -0.2773 27 1 1.6804 -2.4801 2.1269 28 1 4.0788 -1.1999 -2.8262 29 1 3.4858 0.4387 -2.4634 30 1 1.1422 1.0007 -2.7350 31 1 2.5636 -2.9250 -3.6039 32 1 -3.0927 -0.0443 -4.9997 33 1 -1.7080 0.2504 -6.0992 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491255056.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:34 Heat of formation + Delta-G solvation = 31.788998 kcal Electronic energy + Delta-G solvation = -21186.842860 eV Core-core repulsion = 17820.963776 eV Total energy + Delta-G solvation = -3365.879084 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.14208 -39.53288 -37.91209 -37.29477 -37.00732 -33.56254 -33.30024 -31.42973 -31.10016 -28.04619 -27.54334 -26.43154 -24.09282 -23.95907 -22.35749 -19.31693 -19.03448 -18.60225 -18.44331 -18.14626 -17.28567 -16.77995 -15.95711 -15.64940 -15.54030 -15.21985 -15.13132 -15.04332 -14.32336 -14.29156 -13.96801 -13.43454 -13.25415 -13.18935 -12.75927 -12.69981 -12.57365 -12.23370 -12.15926 -11.98995 -11.89254 -11.56877 -10.71611 -10.68776 -10.24971 -9.59502 -9.11771 -8.89973 -7.80026 -5.18903 0.05315 0.12367 1.01321 1.51523 1.54803 1.60577 1.73651 2.32952 2.49224 2.54588 2.58801 2.67347 3.34032 3.55912 3.80356 3.90732 3.95361 4.09170 4.14099 4.19826 4.26512 4.40760 4.57243 4.84663 4.93447 4.98526 5.05986 5.15429 5.38477 5.40344 5.57495 5.68774 5.75696 6.05254 6.31566 7.13073 7.43427 7.85480 8.26255 9.20782 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.016818 B = 0.006133 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.504718 B = 4564.119503 C = 5426.665481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.111 4.111 3 C 0.265 3.735 4 N -0.583 5.583 5 C -0.259 4.259 6 H 0.084 0.916 7 C -0.043 4.043 8 N -0.910 5.910 9 Si 0.954 3.046 10 H -0.285 1.285 11 H -0.309 1.309 12 H -0.270 1.270 13 C 0.178 3.822 14 C -0.066 4.066 15 C -0.082 4.082 16 C 0.036 3.964 17 C 0.010 3.990 18 C -0.027 4.027 19 Cl -0.061 7.061 20 C -0.094 4.094 21 O -0.318 6.318 22 C 0.203 3.797 23 O -0.319 6.319 24 H 0.201 0.799 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.244 0.756 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.146 0.854 32 H 0.162 0.838 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.447 5.442 -12.765 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.114 4.114 3 C 0.140 3.860 4 N -0.301 5.301 5 C -0.389 4.389 6 H 0.102 0.898 7 C -0.240 4.240 8 N -0.554 5.554 9 Si 0.784 3.216 10 H -0.212 1.212 11 H -0.237 1.237 12 H -0.195 1.195 13 C 0.052 3.948 14 C -0.070 4.070 15 C -0.102 4.102 16 C -0.009 4.009 17 C -0.035 4.035 18 C -0.054 4.054 19 Cl -0.032 7.032 20 C -0.114 4.114 21 O -0.235 6.235 22 C 0.093 3.907 23 O -0.235 6.235 24 H 0.218 0.782 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.156 0.844 31 H 0.163 0.837 32 H 0.179 0.821 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.681 5.276 -12.643 13.960 hybrid contribution -0.741 -1.266 0.731 1.639 sum -3.422 4.010 -11.912 13.027 Atomic orbital electron populations 1.24626 0.96042 1.06590 1.05045 1.24512 0.95771 0.94873 0.96242 1.17923 0.82444 0.90992 0.94642 1.44577 1.73574 1.10210 1.01771 1.19538 1.25263 0.92981 1.01136 0.89840 1.25506 0.97093 1.00714 1.00682 1.70297 1.22602 1.45426 1.17089 0.85468 0.77860 0.79569 0.78705 1.21211 1.23726 1.19528 1.20290 0.91039 1.00915 0.82518 1.20945 0.99900 0.91914 0.94204 1.20098 0.89118 1.01372 0.99580 1.19678 0.89637 0.89390 1.02146 1.19332 0.86935 0.95101 1.02168 1.19930 0.94024 0.87036 1.04448 1.98335 1.97057 1.25835 1.82005 1.20836 0.95544 0.97924 0.97080 1.87340 1.28517 1.29413 1.78236 1.26153 1.00231 0.73132 0.91181 1.87325 1.32373 1.49185 1.54666 0.78199 0.91112 0.90797 0.94658 0.90033 0.89538 0.84425 0.83655 0.82118 0.87311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.73 19.02 74.32 1.41 -12.31 16 2 C -0.11 -5.12 10.29 31.12 0.32 -4.80 16 3 C 0.27 11.50 5.45 84.57 0.46 11.96 16 4 N -0.58 -25.21 2.49 -716.90 -1.78 -26.99 16 5 C -0.26 -12.66 9.66 84.03 0.81 -11.85 16 6 H 0.08 3.92 7.91 -2.91 -0.02 3.90 16 7 C -0.04 -2.24 4.84 84.86 0.41 -1.83 16 8 N -0.91 -50.57 9.49 21.65 0.21 -50.36 16 9 Si 0.95 43.04 29.61 68.60 2.03 45.07 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.31 -14.69 7.11 99.48 0.71 -13.99 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 13 C 0.18 6.03 5.82 85.64 0.50 6.53 16 14 C -0.07 -2.30 5.23 -19.86 -0.10 -2.41 16 15 C -0.08 -2.82 8.41 22.35 0.19 -2.63 16 16 C 0.04 1.24 7.15 22.59 0.16 1.40 16 17 C 0.01 0.35 6.94 22.60 0.16 0.51 16 18 C -0.03 -0.95 6.33 22.39 0.14 -0.81 16 19 Cl -0.06 -1.95 28.96 -2.72 -0.08 -2.03 16 20 C -0.09 -3.34 9.47 22.30 0.21 -3.13 16 21 O -0.32 -9.84 11.40 -76.30 -0.87 -10.71 16 22 C 0.20 4.50 8.89 113.37 1.01 5.51 16 23 O -0.32 -9.66 11.40 -76.02 -0.87 -10.52 16 24 H 0.20 8.05 7.80 -4.42 -0.03 8.01 16 25 H 0.07 3.47 6.43 -2.39 -0.02 3.46 16 26 H 0.07 2.63 7.97 -2.38 -0.02 2.61 16 27 H 0.24 13.66 8.31 -92.71 -0.77 12.88 16 28 H 0.08 2.53 7.97 -2.39 -0.02 2.51 16 29 H 0.09 2.43 7.89 -2.39 -0.02 2.41 16 30 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 31 H 0.15 4.95 8.06 -2.91 -0.02 4.93 16 32 H 0.16 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -62.54 308.83 5.45 -57.09 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 1.13 Total: 12.32 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 5.68 Total: -13.86 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -1.58 Total: -77.35 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -1.74 Total: -21.23 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.08 Total: -2.03 kcal Total: -62.54 5.45 -57.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491255056.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.882 kcal (2) G-P(sol) polarization free energy of solvation -62.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds