Wall clock time and date at job start Tue Mar 31 2020 06:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47322 * 333.82783 * 3 2 1 5 5 C 1.37090 * 120.00290 * 93.70003 * 4 3 2 6 6 H 1.08000 * 120.00251 * 154.85987 * 5 4 3 7 7 C 1.38950 * 120.00187 * 334.85500 * 5 4 3 8 8 N 1.31411 * 119.99821 * 353.98009 * 7 5 4 9 9 Si 1.86799 * 120.00406 * 173.98294 * 7 5 4 10 10 H 1.48500 * 109.46684 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47067 * 119.99853 * 9 7 5 12 12 H 1.48497 * 109.47031 * 239.99943 * 9 7 5 13 13 C 1.34777 * 119.99602 * 273.69408 * 4 3 2 14 14 O 1.21294 * 120.00248 * 185.54004 * 13 4 3 15 15 C 1.50705 * 120.00266 * 5.55010 * 13 4 3 16 16 H 1.09000 * 109.47227 * 34.24788 * 15 13 4 17 17 O 1.42898 * 109.47295 * 154.25295 * 15 13 4 18 18 C 1.50703 * 109.46678 * 274.25149 * 15 13 4 19 19 C 1.38242 * 119.99015 * 114.48559 * 18 15 13 20 20 C 1.38206 * 120.01582 * 180.02562 * 19 18 15 21 21 C 1.38354 * 119.98954 * 0.25392 * 20 19 18 22 22 Cl 1.73592 * 120.01733 * 179.69934 * 21 20 19 23 23 C 1.38358 * 119.96837 * 359.42488 * 21 20 19 24 24 C 1.38216 * 119.98585 * 0.59979 * 23 21 20 25 25 H 4.40641 * 5.51434 * 180.02562 * 4 1 2 26 26 H 1.08997 * 109.47230 * 213.82191 * 3 2 1 27 27 H 1.09005 * 109.46891 * 93.82766 * 3 2 1 28 28 H 0.96998 * 120.00629 * 179.97438 * 8 7 5 29 29 H 0.96702 * 113.99880 * 59.99559 * 17 15 13 30 30 H 1.08002 * 119.99086 * 359.97438 * 19 18 15 31 31 H 1.08002 * 120.00549 * 179.97438 * 20 19 18 32 32 H 1.07995 * 120.00601 * 180.29578 * 23 21 20 33 33 H 1.07997 * 119.99074 * 179.72355 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2387 0.6092 5 6 3.4362 -2.3182 -0.1803 6 1 4.1475 -3.0555 0.1616 7 6 2.8263 -2.4639 -1.4202 8 7 1.8754 -1.6341 -1.7863 9 14 3.3580 -3.8394 -2.5669 10 1 4.4390 -4.6292 -1.9244 11 1 2.1991 -4.7239 -2.8496 12 1 3.8589 -3.2582 -3.8382 13 6 3.2887 -1.3175 1.9458 14 8 3.7873 -2.3057 2.4418 15 6 2.8409 -0.1778 2.8244 16 1 1.9517 0.2840 2.3953 17 8 2.5376 -0.6735 4.1299 18 6 3.9426 0.8461 2.9193 19 6 3.7604 2.1086 2.3863 20 6 4.7706 3.0478 2.4726 21 6 5.9665 2.7227 3.0878 22 17 7.2387 3.8994 3.1896 23 6 6.1458 1.4612 3.6269 24 6 5.1350 0.5226 3.5395 25 1 -1.0498 -0.0005 0.0000 26 1 3.0090 0.8545 0.5720 27 1 3.0093 0.0694 -1.0254 28 1 1.4498 -1.7355 -2.6520 29 1 3.2848 -1.0985 4.5726 30 1 2.8287 2.3607 1.9017 31 1 4.6283 4.0339 2.0558 32 1 7.0772 1.2083 4.1114 33 1 5.2765 -0.4636 3.9564 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491771631.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:53 Heat of formation + Delta-G solvation = -13.082126 kcal Electronic energy + Delta-G solvation = -21047.175192 eV Core-core repulsion = 17679.350350 eV Total energy + Delta-G solvation = -3367.824842 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.47286 -39.84551 -37.92888 -37.36721 -36.70464 -34.06991 -33.09506 -32.40916 -32.05979 -28.65895 -27.97662 -26.04746 -23.91812 -23.01205 -21.20112 -19.72634 -19.00258 -18.56933 -18.18584 -17.44073 -16.90344 -16.67309 -16.02291 -15.72560 -15.56781 -15.06939 -14.68643 -14.54254 -14.45613 -14.18125 -14.02168 -13.60239 -13.35772 -12.95067 -12.83122 -12.54484 -12.51099 -12.50051 -12.16163 -11.83490 -11.75174 -11.30586 -11.00836 -10.60648 -10.37851 -10.05590 -9.82254 -9.59316 -8.28284 -6.04215 -0.00401 0.26247 1.09625 1.33588 1.40988 1.53127 1.78470 2.07736 2.30521 2.40166 2.53350 2.98976 3.05350 3.46854 3.60155 3.72786 3.82845 3.90724 4.05079 4.15054 4.31845 4.52067 4.57087 4.67150 4.93443 4.97868 5.11621 5.17448 5.41980 5.42930 5.45321 5.71402 6.02011 6.36967 6.49617 7.07548 7.17873 7.33356 7.85041 8.65514 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.017879 B = 0.004828 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.701463 B = 5797.733899 C = 5986.555473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.148 4.148 3 C 0.233 3.767 4 N -0.443 5.443 5 C -0.348 4.348 6 H 0.075 0.925 7 C 0.003 3.997 8 N -0.875 5.875 9 Si 0.988 3.012 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.266 1.266 13 C 0.423 3.577 14 O -0.616 6.616 15 C 0.149 3.851 16 H 0.122 0.878 17 O -0.544 6.544 18 C -0.117 4.117 19 C -0.096 4.096 20 C -0.104 4.104 21 C -0.037 4.037 22 Cl -0.063 7.063 23 C -0.108 4.108 24 C -0.101 4.101 25 H 0.231 0.769 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.273 0.727 29 H 0.387 0.613 30 H 0.153 0.847 31 H 0.162 0.838 32 H 0.151 0.849 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.261 12.225 5.579 14.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.150 4.150 3 C 0.111 3.889 4 N -0.161 5.161 5 C -0.475 4.475 6 H 0.093 0.907 7 C -0.200 4.200 8 N -0.512 5.512 9 Si 0.812 3.188 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.191 1.191 13 C 0.212 3.788 14 O -0.503 6.503 15 C 0.086 3.914 16 H 0.140 0.860 17 O -0.350 6.350 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.064 4.064 22 Cl -0.034 7.034 23 C -0.127 4.127 24 C -0.119 4.119 25 H 0.248 0.752 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.238 0.762 30 H 0.171 0.829 31 H 0.180 0.820 32 H 0.169 0.831 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.944 12.118 5.494 13.878 hybrid contribution 0.506 -1.227 -0.641 1.474 sum 4.450 10.891 4.852 12.726 Atomic orbital electron populations 1.25100 0.96310 1.01716 1.03394 1.23266 0.94783 0.98907 0.98065 1.18437 0.84801 0.85617 1.00028 1.43816 1.55741 1.12200 1.04354 1.19631 1.24665 1.03609 0.99632 0.90705 1.26064 0.94633 1.00197 0.99111 1.70028 1.22393 1.37064 1.21743 0.84955 0.77989 0.77924 0.77956 1.19985 1.20464 1.19051 1.21502 0.84136 0.89783 0.83369 1.90477 1.49925 1.35895 1.74028 1.20578 0.97311 0.89709 0.83790 0.86010 1.86519 1.42046 1.78824 1.27627 1.20367 0.95693 0.95453 1.00316 1.21232 1.00377 0.91395 0.98449 1.21281 0.91015 1.01199 0.98716 1.21089 0.91240 0.91405 1.02638 1.98365 1.50596 1.57384 1.97068 1.21168 1.00099 0.91415 0.99971 1.21035 0.92453 0.99761 0.98659 0.75213 0.88937 0.88842 0.91690 0.76242 0.82947 0.82040 0.83081 0.85302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.53 19.24 74.32 1.43 -8.10 16 2 C -0.15 -6.33 10.01 31.12 0.31 -6.02 16 3 C 0.23 10.00 4.80 84.57 0.41 10.41 16 4 N -0.44 -22.19 2.59 -645.42 -1.67 -23.86 16 5 C -0.35 -19.22 9.28 84.04 0.78 -18.44 16 6 H 0.08 4.44 7.40 -2.91 -0.02 4.42 16 7 C 0.00 0.16 5.19 84.93 0.44 0.60 16 8 N -0.88 -44.38 8.83 21.66 0.19 -44.19 16 9 Si 0.99 41.79 29.56 68.60 2.03 43.82 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 13 C 0.42 20.32 6.55 87.66 0.57 20.90 16 14 O -0.62 -33.61 16.09 14.56 0.23 -33.37 16 15 C 0.15 5.56 2.85 29.10 0.08 5.65 16 16 H 0.12 4.46 6.02 -2.39 -0.01 4.45 16 17 O -0.54 -19.98 13.13 -131.34 -1.73 -21.71 16 18 C -0.12 -3.62 4.59 -19.86 -0.09 -3.71 16 19 C -0.10 -2.44 8.12 22.26 0.18 -2.26 16 20 C -0.10 -2.27 9.83 22.29 0.22 -2.05 16 21 C -0.04 -0.85 6.32 22.33 0.14 -0.71 16 22 Cl -0.06 -1.27 28.96 -2.72 -0.08 -1.34 16 23 C -0.11 -2.64 9.83 22.29 0.22 -2.42 16 24 C -0.10 -2.93 9.04 22.27 0.20 -2.73 16 25 H 0.23 6.93 7.80 -4.43 -0.03 6.90 16 26 H 0.09 3.25 4.28 -2.39 -0.01 3.24 16 27 H 0.09 4.31 6.68 -2.38 -0.02 4.29 16 28 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 29 H 0.39 12.56 7.66 -74.06 -0.57 11.99 16 30 H 0.15 3.30 7.34 -2.91 -0.02 3.28 16 31 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 32 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.13 3.83 7.47 -2.91 -0.02 3.81 16 Total: -1.00 -65.65 305.19 4.47 -61.18 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.60 Total: 28.38 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 4.90 Total: -8.91 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: -1.48 Total: -68.05 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -1.49 Total: -55.08 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.34 kcal Total: -65.65 4.47 -61.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491771631.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.099 kcal (2) G-P(sol) polarization free energy of solvation -65.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds