Wall clock time and date at job start Tue Mar 31 2020 07:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39725 * 125.78095 * 2 1 4 4 C 1.36154 * 107.86065 * 179.97438 * 3 2 1 5 5 N 1.39361 * 126.26135 * 179.97438 * 4 3 2 6 6 C 1.34782 * 120.00560 * 0.02562 * 5 4 3 7 7 O 1.21643 * 119.99375 * 359.97438 * 6 5 4 8 8 C 1.47122 * 120.00299 * 179.97438 * 6 5 4 9 9 C 1.38271 * 128.47530 * 179.69841 * 8 6 5 10 10 N 1.31239 * 111.88127 * 179.81387 * 9 8 6 11 11 N 1.27336 * 120.03929 * 0.53960 * 10 9 8 12 12 S 1.56631 * 109.74779 * 359.68854 * 11 10 9 13 13 N 1.35805 * 107.47168 * 0.02562 * 4 3 2 14 14 C 1.46501 * 126.09665 * 179.97438 * 13 4 3 15 15 C 1.50703 * 109.46665 * 269.99926 * 14 13 4 16 16 H 1.07999 * 120.00066 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99577 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00310 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99613 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47408 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47139 * 120.00169 * 19 17 15 22 22 H 1.48505 * 109.47437 * 239.99960 * 19 17 15 23 23 N 1.30835 * 125.77674 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47346 * 270.02202 * 1 2 3 25 25 H 1.08999 * 109.46953 * 30.02559 * 1 2 3 26 26 H 1.09001 * 109.47239 * 150.02647 * 1 2 3 27 27 H 1.08005 * 126.06946 * 359.97438 * 3 2 1 28 28 H 0.97004 * 120.00164 * 180.02562 * 5 4 3 29 29 H 1.08001 * 124.05971 * 0.02562 * 9 8 6 30 30 H 1.08997 * 109.46897 * 29.99045 * 14 13 4 31 31 H 1.08995 * 109.47260 * 149.99618 * 14 13 4 32 32 H 0.97001 * 120.00149 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1335 0.0000 4 6 3.6195 0.7146 0.0006 5 7 4.7495 1.5302 0.0003 6 6 4.6130 2.8711 -0.0002 7 8 3.5033 3.3693 -0.0007 8 6 5.8060 3.7320 0.0001 9 6 5.8702 5.1132 -0.0060 10 7 7.1094 5.5453 0.0003 11 7 8.0742 4.7143 0.0004 12 16 7.5132 3.2519 0.0002 13 7 3.6088 -0.6434 0.0004 14 6 4.7858 -1.5158 0.0003 15 6 5.1893 -1.8146 -1.4206 16 1 4.6253 -1.3969 -2.2414 17 6 6.2787 -2.6213 -1.6727 18 7 6.9659 -3.1296 -0.6732 19 14 6.7785 -2.9923 -3.4339 20 1 5.8503 -2.3048 -4.3672 21 1 8.1631 -2.5089 -3.6679 22 1 6.7200 -4.4578 -3.6669 23 7 2.2719 -1.0615 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5134 27 1 1.9875 2.1599 -0.0004 28 1 5.6344 1.1328 0.0004 29 1 5.0045 5.7589 -0.0115 30 1 5.6076 -1.0171 0.5141 31 1 4.5478 -2.4471 0.5140 32 1 7.7321 -3.6974 -0.8506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516773781.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:08 Heat of formation + Delta-G solvation = 118.640924 kcal Electronic energy + Delta-G solvation = -20355.093508 eV Core-core repulsion = 17059.609815 eV Total energy + Delta-G solvation = -3295.483693 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.19169 -40.81666 -39.22251 -35.00773 -33.89270 -32.44283 -32.12428 -29.37769 -28.73656 -27.40192 -26.12255 -23.82903 -22.83990 -21.26795 -20.12501 -19.87310 -18.98071 -17.39524 -16.87124 -16.41727 -16.14906 -15.75935 -15.17410 -14.87439 -14.58057 -14.23565 -14.07352 -13.11216 -12.87041 -12.84991 -12.60542 -12.20286 -12.15228 -11.89988 -11.67036 -11.15904 -10.98095 -10.63958 -10.52396 -10.42264 -10.33799 -10.27291 -10.08672 -9.87264 -9.73721 -8.79834 -8.04759 -7.62259 -6.40956 -4.49908 -0.52987 0.56051 1.24020 1.68067 2.32195 2.45734 3.02734 3.10166 3.19771 3.24744 3.46611 3.58077 3.78075 4.17941 4.37723 4.46509 4.92469 5.24263 5.32057 5.50535 5.94594 5.97001 6.03441 6.12311 6.24282 6.49714 6.71877 6.93648 7.25218 7.38146 7.41873 7.51565 7.65267 7.71268 7.99396 8.49399 8.60789 9.18392 10.66198 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.006314 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.048516 B = 4433.871181 C = 6607.847655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.051 3.949 3 C -0.286 4.286 4 C 0.295 3.705 5 N -0.629 5.629 6 C 0.608 3.392 7 O -0.491 6.491 8 C -0.287 4.287 9 C 0.079 3.921 10 N -0.254 5.254 11 N -0.258 5.258 12 S 0.446 5.554 13 N -0.342 5.342 14 C 0.255 3.745 15 C -0.543 4.543 16 H 0.066 0.934 17 C 0.068 3.932 18 N -0.888 5.888 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.279 1.279 23 N -0.277 5.277 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.163 0.837 28 H 0.416 0.584 29 H 0.218 0.782 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.745 11.622 2.492 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C -0.318 4.318 4 C 0.074 3.926 5 N -0.275 5.275 6 C 0.392 3.608 7 O -0.364 6.364 8 C -0.429 4.429 9 C -0.089 4.089 10 N -0.118 5.118 11 N -0.239 5.239 12 S 0.581 5.419 13 N -0.128 5.128 14 C 0.137 3.863 15 C -0.581 4.581 16 H 0.084 0.916 17 C -0.136 4.136 18 N -0.526 5.526 19 Si 0.731 3.269 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.204 1.204 23 N -0.103 5.103 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.180 0.820 28 H 0.252 0.748 29 H 0.234 0.766 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.202 10.482 2.550 10.789 hybrid contribution -0.365 0.570 -0.968 1.181 sum -0.567 11.051 1.582 11.179 Atomic orbital electron populations 1.20039 0.87396 1.02589 1.02167 1.22032 0.96633 0.90862 1.01842 1.21276 0.88890 1.00595 1.21027 1.17884 0.87411 0.83406 1.03947 1.42447 1.08799 1.04865 1.71410 1.16187 0.86649 0.80500 0.77497 1.90794 1.24293 1.73639 1.47721 1.27837 0.99979 0.98469 1.16580 1.24480 0.95766 0.91841 0.96786 1.70730 0.96956 1.28274 1.15866 1.78829 1.25041 1.00643 1.19423 1.83024 0.93543 1.16419 1.48934 1.49553 1.06617 1.01846 1.54794 1.19679 0.77724 0.89795 0.99086 1.21376 1.13400 1.32084 0.91268 0.91559 1.24929 0.95657 0.94805 0.98202 1.69913 1.19136 1.32477 1.31037 0.86328 0.78423 0.78577 0.83588 1.19517 1.20538 1.20441 1.77376 0.86034 1.21758 1.25102 0.91260 0.91025 0.91399 0.81957 0.74751 0.76560 0.93820 0.92290 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.44 36.01 0.38 -0.50 16 2 C 0.05 0.97 7.20 -82.46 -0.59 0.37 16 3 C -0.29 -5.46 9.58 -39.78 -0.38 -5.84 16 4 C 0.30 5.85 7.68 -152.76 -1.17 4.68 16 5 N -0.63 -10.29 5.41 -12.41 -0.07 -10.36 16 6 C 0.61 8.94 7.77 -12.65 -0.10 8.85 16 7 O -0.49 -8.10 14.10 5.24 0.07 -8.03 16 8 C -0.29 -3.41 6.81 -35.97 -0.25 -3.66 16 9 C 0.08 0.85 11.55 -17.79 -0.21 0.64 16 10 N -0.25 -3.12 11.54 30.36 0.35 -2.77 16 11 N -0.26 -3.19 12.51 60.35 0.75 -2.44 16 12 S 0.45 4.80 23.04 -107.50 -2.48 2.32 16 13 N -0.34 -7.62 3.62 -61.45 -0.22 -7.84 16 14 C 0.25 6.06 6.02 -5.19 -0.03 6.03 16 15 C -0.54 -13.98 9.39 -34.44 -0.32 -14.30 16 16 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 17 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -23.37 13.29 55.43 0.74 -22.63 16 19 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 23 N -0.28 -6.14 12.56 33.64 0.42 -5.72 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.16 2.95 5.82 -52.48 -0.31 2.64 16 28 H 0.42 6.27 7.42 -40.82 -0.30 5.97 16 29 H 0.22 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.04 0.99 7.52 -51.93 -0.39 0.60 16 31 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 306.35 15.07 4.62 4.62 Total: -1.00 -30.05 306.35 -6.26 -36.32 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -2.66 Total: 3.62 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -2.77 Total: -2.08 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 1.97 Total: -51.75 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.07 Total: -8.03 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -2.48 Total: 2.32 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.05 -6.26 -36.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516773781.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.959 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds