Wall clock time and date at job start Tue Mar 31 2020 07:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39725 * 125.78095 * 2 1 4 4 C 1.36154 * 107.86065 * 179.97438 * 3 2 1 5 5 N 1.39361 * 126.26135 * 179.97438 * 4 3 2 6 6 C 1.34782 * 120.00560 * 0.02562 * 5 4 3 7 7 O 1.21643 * 119.99375 * 359.97438 * 6 5 4 8 8 C 1.47122 * 120.00299 * 179.97438 * 6 5 4 9 9 C 1.38271 * 128.47530 * 179.69841 * 8 6 5 10 10 N 1.31239 * 111.88127 * 179.81387 * 9 8 6 11 11 N 1.27336 * 120.03929 * 0.53960 * 10 9 8 12 12 S 1.56631 * 109.74779 * 359.68854 * 11 10 9 13 13 N 1.35805 * 107.47168 * 0.02562 * 4 3 2 14 14 C 1.46501 * 126.09665 * 179.97438 * 13 4 3 15 15 C 1.50703 * 109.46665 * 269.99926 * 14 13 4 16 16 H 1.07999 * 120.00066 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99577 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00310 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99613 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47408 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47139 * 120.00169 * 19 17 15 22 22 H 1.48505 * 109.47437 * 239.99960 * 19 17 15 23 23 N 1.30835 * 125.77674 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47346 * 270.02202 * 1 2 3 25 25 H 1.08999 * 109.46953 * 30.02559 * 1 2 3 26 26 H 1.09001 * 109.47239 * 150.02647 * 1 2 3 27 27 H 1.08005 * 126.06946 * 359.97438 * 3 2 1 28 28 H 0.97004 * 120.00164 * 180.02562 * 5 4 3 29 29 H 1.08001 * 124.05971 * 0.02562 * 9 8 6 30 30 H 1.08997 * 109.46897 * 29.99045 * 14 13 4 31 31 H 1.08995 * 109.47260 * 149.99618 * 14 13 4 32 32 H 0.97001 * 120.00149 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1335 0.0000 4 6 3.6195 0.7146 0.0006 5 7 4.7495 1.5302 0.0003 6 6 4.6130 2.8711 -0.0002 7 8 3.5033 3.3693 -0.0007 8 6 5.8060 3.7320 0.0001 9 6 5.8702 5.1132 -0.0060 10 7 7.1094 5.5453 0.0003 11 7 8.0742 4.7143 0.0004 12 16 7.5132 3.2519 0.0002 13 7 3.6088 -0.6434 0.0004 14 6 4.7858 -1.5158 0.0003 15 6 5.1893 -1.8146 -1.4206 16 1 4.6253 -1.3969 -2.2414 17 6 6.2787 -2.6213 -1.6727 18 7 6.9659 -3.1296 -0.6732 19 14 6.7785 -2.9923 -3.4339 20 1 5.8503 -2.3048 -4.3672 21 1 8.1631 -2.5089 -3.6679 22 1 6.7200 -4.4578 -3.6669 23 7 2.2719 -1.0615 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5134 27 1 1.9875 2.1599 -0.0004 28 1 5.6344 1.1328 0.0004 29 1 5.0045 5.7589 -0.0115 30 1 5.6076 -1.0171 0.5141 31 1 4.5478 -2.4471 0.5140 32 1 7.7321 -3.6974 -0.8506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516773781.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:08 Heat of formation + Delta-G solvation = 98.893985 kcal Electronic energy + Delta-G solvation = -20355.949799 eV Core-core repulsion = 17059.609815 eV Total energy + Delta-G solvation = -3296.339984 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.50813 -41.91201 -40.52545 -36.40378 -35.67216 -33.86420 -33.36007 -30.85177 -30.13907 -28.52621 -27.79607 -25.09580 -24.47685 -22.44600 -21.46646 -21.12839 -20.08669 -18.92579 -18.61862 -17.80880 -17.19458 -17.06467 -16.52322 -16.36349 -15.84649 -15.54700 -15.52274 -14.61582 -14.44043 -14.05357 -13.89432 -13.59797 -13.39220 -13.14432 -13.05214 -12.91302 -12.71561 -12.31825 -12.06228 -11.70299 -11.68502 -11.36424 -11.26633 -11.18094 -11.01840 -10.75730 -9.65931 -9.14386 -8.36208 -6.53190 -1.48708 -0.34920 0.31864 0.61753 1.03039 1.14547 1.35504 1.39790 1.50376 1.70753 2.04466 2.05565 2.33959 2.85027 2.94649 3.29550 3.53654 3.81637 4.18989 4.51059 4.56816 4.70005 4.73427 4.86151 4.93139 4.95322 5.20500 5.23067 5.52086 5.76987 5.92399 5.97552 6.15099 6.46931 6.53179 6.67310 6.98146 7.18998 8.70397 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.006314 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.048516 B = 4433.871181 C = 6607.847655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.059 3.941 3 C -0.294 4.294 4 C 0.294 3.706 5 N -0.631 5.631 6 C 0.617 3.383 7 O -0.507 6.507 8 C -0.304 4.304 9 C 0.098 3.902 10 N -0.271 5.271 11 N -0.274 5.274 12 S 0.488 5.512 13 N -0.366 5.366 14 C 0.269 3.731 15 C -0.556 4.556 16 H 0.048 0.952 17 C 0.031 3.969 18 N -0.912 5.912 19 Si 0.963 3.037 20 H -0.276 1.276 21 H -0.264 1.264 22 H -0.277 1.277 23 N -0.324 5.324 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.175 0.825 28 H 0.419 0.581 29 H 0.244 0.756 30 H 0.050 0.950 31 H 0.030 0.970 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.802 12.829 1.935 13.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C -0.326 4.326 4 C 0.072 3.928 5 N -0.278 5.278 6 C 0.402 3.598 7 O -0.382 6.382 8 C -0.446 4.446 9 C -0.070 4.070 10 N -0.133 5.133 11 N -0.255 5.255 12 S 0.624 5.376 13 N -0.152 5.152 14 C 0.151 3.849 15 C -0.594 4.594 16 H 0.067 0.933 17 C -0.171 4.171 18 N -0.549 5.549 19 Si 0.788 3.212 20 H -0.201 1.201 21 H -0.189 1.189 22 H -0.202 1.202 23 N -0.149 5.149 24 H 0.109 0.891 25 H 0.114 0.886 26 H 0.090 0.910 27 H 0.192 0.808 28 H 0.257 0.743 29 H 0.259 0.741 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.239 11.712 2.003 11.884 hybrid contribution -0.371 0.253 -0.756 0.879 sum -0.609 11.966 1.246 12.046 Atomic orbital electron populations 1.20247 0.83817 1.03995 1.03969 1.22883 0.98791 0.89945 0.99009 1.21520 0.88665 1.01115 1.21277 1.18238 0.88873 0.82831 1.02863 1.42559 1.08143 1.05263 1.71859 1.16399 0.87274 0.79851 0.76262 1.90768 1.25339 1.73730 1.48353 1.27519 0.99644 0.98571 1.18825 1.24883 0.95991 0.91601 0.94574 1.70790 0.97269 1.28519 1.16754 1.78730 1.25681 1.01526 1.19594 1.82920 0.92382 1.15128 1.47217 1.49345 1.06378 1.02570 1.56869 1.19283 0.78633 0.89139 0.97871 1.21437 1.13650 1.32642 0.91643 0.93322 1.25615 0.95440 0.94353 1.01723 1.69978 1.19501 1.32750 1.32707 0.85427 0.78513 0.78221 0.79076 1.20084 1.18920 1.20236 1.77332 0.86308 1.23629 1.27617 0.89132 0.88599 0.90974 0.80808 0.74282 0.74055 0.93179 0.95205 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.58 10.44 71.24 0.74 -0.83 16 2 C 0.06 2.19 7.20 43.07 0.31 2.50 16 3 C -0.29 -11.00 9.58 22.14 0.21 -10.79 16 4 C 0.29 11.65 7.68 131.20 1.01 12.66 16 5 N -0.63 -20.42 5.41 -311.40 -1.68 -22.10 16 6 C 0.62 17.43 7.77 86.57 0.67 18.11 16 7 O -0.51 -16.02 14.10 -4.17 -0.06 -16.08 16 8 C -0.30 -6.73 6.81 24.61 0.17 -6.56 16 9 C 0.10 1.89 11.55 84.79 0.98 2.87 16 10 N -0.27 -6.13 11.54 -57.85 -0.67 -6.80 16 11 N -0.27 -6.33 12.51 37.02 0.46 -5.87 16 12 S 0.49 9.78 23.04 -56.49 -1.30 8.48 16 13 N -0.37 -16.64 3.62 -348.34 -1.26 -17.90 16 14 C 0.27 13.22 6.02 85.63 0.52 13.73 16 15 C -0.56 -29.13 9.39 25.60 0.24 -28.89 16 16 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 17 C 0.03 1.57 5.46 84.66 0.46 2.04 16 18 N -0.91 -48.04 13.29 21.45 0.28 -47.75 16 19 Si 0.96 40.69 29.54 68.60 2.03 42.71 16 20 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 22 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 23 N -0.32 -14.55 12.56 -47.47 -0.60 -15.15 16 24 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.17 6.06 5.82 -2.91 -0.02 6.04 16 28 H 0.42 12.60 7.42 -92.71 -0.69 11.91 16 29 H 0.24 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.05 2.34 7.52 -2.39 -0.02 2.32 16 31 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -64.25 306.35 3.02 -61.23 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.50 Total: 14.39 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 5.31 Total: 4.84 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -3.46 Total: -115.57 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.06 Total: -16.08 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: 9.78 SS G_CDS: -1.30 Total: 8.48 kcal Total: -64.25 3.02 -61.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516773781.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.124 kcal (2) G-P(sol) polarization free energy of solvation -64.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds