Wall clock time and date at job start Tue Mar 31 2020 07:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39759 * 125.83975 * 2 1 4 4 C 1.36130 * 107.82513 * 180.02562 * 3 2 1 5 5 N 1.39401 * 126.21623 * 180.02562 * 4 3 2 6 6 C 1.34772 * 119.99999 * 359.97438 * 5 4 3 7 7 O 1.21614 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.47421 * 119.99878 * 180.02562 * 6 5 4 9 9 C 1.37996 * 124.15523 * 179.72629 * 8 6 5 10 10 S 1.72109 * 104.03226 * 179.97438 * 9 8 6 11 11 N 1.56401 * 96.15149 * 0.28106 * 10 9 8 12 12 N 1.27415 * 109.88453 * 359.82775 * 11 10 9 13 13 N 1.35265 * 107.56522 * 0.02562 * 4 3 2 14 14 C 1.46504 * 126.04932 * 180.02562 * 13 4 3 15 15 C 1.50693 * 109.47102 * 270.00012 * 14 13 4 16 16 H 1.08004 * 120.00247 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00172 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99717 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00280 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46993 * 59.99969 * 19 17 15 21 21 H 1.48496 * 109.47184 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46779 * 300.00189 * 19 17 15 23 23 N 1.30853 * 125.83761 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.46956 * 270.02227 * 1 2 3 25 25 H 1.09003 * 109.46721 * 30.01961 * 1 2 3 26 26 H 1.08993 * 109.47080 * 150.02308 * 1 2 3 27 27 H 1.07997 * 126.08345 * 0.02659 * 3 2 1 28 28 H 0.97001 * 120.00005 * 180.02562 * 5 4 3 29 29 H 1.07996 * 127.98643 * 0.03034 * 9 8 6 30 30 H 1.08999 * 109.46543 * 30.00152 * 14 13 4 31 31 H 1.08997 * 109.47063 * 149.99676 * 14 13 4 32 32 H 0.96992 * 120.00101 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6199 0.7120 -0.0006 5 7 4.7510 1.5268 -0.0003 6 6 4.6155 2.8677 0.0002 7 8 3.5065 3.3668 -0.0002 8 6 5.8116 3.7294 -0.0001 9 6 5.7728 5.1088 -0.0051 10 16 7.4301 5.5729 -0.0021 11 7 8.0109 4.1207 -0.0029 12 7 7.0593 3.2734 -0.0017 13 7 3.6093 -0.6406 -0.0015 14 6 4.7870 -1.5120 -0.0018 15 6 5.1911 -1.8098 -1.4227 16 1 4.6274 -1.3915 -2.2435 17 6 6.2812 -2.6156 -1.6750 18 7 6.9680 -3.1246 -0.6756 19 14 6.7826 -2.9842 -3.4363 20 1 7.1057 -1.7143 -4.1350 21 1 7.9770 -3.8665 -3.4366 22 1 5.6639 -3.6641 -4.1373 23 7 2.2731 -1.0608 -0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8901 -0.5134 27 1 1.9902 2.1596 0.0004 28 1 5.6355 1.1287 -0.0011 29 1 4.9033 5.7492 -0.0091 30 1 5.6082 -1.0130 0.5126 31 1 4.5496 -2.4439 0.5113 32 1 7.7346 -3.6917 -0.8530 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520111667.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:15 Heat of formation + Delta-G solvation = 117.877052 kcal Electronic energy + Delta-G solvation = -20424.376664 eV Core-core repulsion = 17128.859847 eV Total energy + Delta-G solvation = -3295.516817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.40611 -40.66530 -38.97228 -34.87453 -33.77475 -32.43159 -32.05272 -29.22331 -28.47518 -27.21173 -26.03509 -24.30585 -22.79815 -21.29072 -20.33847 -19.78216 -18.53760 -17.10004 -16.71160 -16.25242 -16.14740 -15.90630 -15.02380 -14.97027 -14.47476 -14.08115 -13.95850 -12.97694 -12.78697 -12.76494 -12.52981 -12.34815 -12.06893 -11.81409 -11.56114 -11.08422 -10.84890 -10.57482 -10.50172 -10.33320 -10.32495 -10.21505 -10.16800 -9.81048 -9.65658 -8.67371 -7.95435 -7.51144 -6.29123 -4.37605 -0.19222 0.64964 1.18566 1.28697 2.50743 2.69784 3.18402 3.22444 3.26301 3.30467 3.54421 3.58258 3.78105 4.28240 4.43048 4.66070 5.04403 5.05762 5.33344 5.59190 6.00999 6.10092 6.14187 6.20118 6.34028 6.58830 6.85469 7.03685 7.23639 7.46383 7.53199 7.62646 7.78536 7.83230 8.14528 8.60015 8.71072 9.29761 10.78341 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.010922 B = 0.005790 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.062263 B = 4835.176861 C = 6963.767634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.291 4.291 4 C 0.298 3.702 5 N -0.618 5.618 6 C 0.611 3.389 7 O -0.501 6.501 8 C -0.016 4.016 9 C -0.233 4.233 10 S 0.457 5.543 11 N -0.283 5.283 12 N -0.203 5.203 13 N -0.340 5.340 14 C 0.255 3.745 15 C -0.542 4.542 16 H 0.064 0.936 17 C 0.068 3.932 18 N -0.889 5.889 19 Si 0.906 3.094 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.273 1.273 23 N -0.280 5.280 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.162 0.838 28 H 0.427 0.573 29 H 0.211 0.789 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.628 18.269 2.520 18.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.323 4.323 4 C 0.075 3.925 5 N -0.264 5.264 6 C 0.392 3.608 7 O -0.374 6.374 8 C -0.163 4.163 9 C -0.390 4.390 10 S 0.593 5.407 11 N -0.263 5.263 12 N -0.073 5.073 13 N -0.125 5.125 14 C 0.138 3.862 15 C -0.581 4.581 16 H 0.083 0.917 17 C -0.136 4.136 18 N -0.526 5.526 19 Si 0.733 3.267 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.199 1.199 23 N -0.106 5.106 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.179 0.821 28 H 0.265 0.735 29 H 0.228 0.772 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.130 17.181 2.578 17.374 hybrid contribution -0.458 -0.044 -0.975 1.078 sum -0.588 17.137 1.603 17.222 Atomic orbital electron populations 1.20023 0.87459 1.02509 1.02092 1.22032 0.96567 0.90936 1.01912 1.21264 0.88920 1.00520 1.21618 1.17835 0.87582 0.83522 1.03535 1.42458 1.09266 1.04882 1.69832 1.16375 0.86170 0.80766 0.77452 1.90773 1.24063 1.73892 1.48621 1.22436 0.92829 0.92526 1.08536 1.28851 1.07123 0.98058 1.04963 1.81513 0.91873 1.17188 1.50153 1.78720 1.24823 1.00530 1.22276 1.71606 0.96154 1.27350 1.12239 1.49403 1.06648 1.02030 1.54423 1.19679 0.77730 0.89768 0.99072 1.21271 1.13461 1.32114 0.91211 0.91750 1.24922 0.95599 0.94865 0.98178 1.69900 1.19085 1.32478 1.31135 0.86408 0.78075 0.78501 0.83696 1.19981 1.20859 1.19872 1.77378 0.86049 1.21777 1.25371 0.91320 0.91092 0.91441 0.82054 0.73483 0.77198 0.93632 0.92385 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.01 0.38 -0.53 16 2 C 0.05 1.00 7.21 -82.44 -0.59 0.41 16 3 C -0.29 -5.90 9.58 -39.77 -0.38 -6.28 16 4 C 0.30 6.40 7.66 -153.22 -1.17 5.23 16 5 N -0.62 -11.65 5.41 -12.44 -0.07 -11.71 16 6 C 0.61 10.13 7.77 -12.52 -0.10 10.04 16 7 O -0.50 -8.75 13.92 5.26 0.07 -8.68 16 8 C -0.02 -0.22 6.87 -83.78 -0.58 -0.79 16 9 C -0.23 -2.17 11.21 30.64 0.34 -1.83 16 10 S 0.46 3.54 23.38 -107.50 -2.51 1.03 16 11 N -0.28 -3.62 12.49 60.35 0.75 -2.86 16 12 N -0.20 -3.01 11.24 32.73 0.37 -2.65 16 13 N -0.34 -8.10 3.60 -61.59 -0.22 -8.32 16 14 C 0.26 6.54 6.01 -5.19 -0.03 6.51 16 15 C -0.54 -14.95 9.39 -34.44 -0.32 -15.27 16 16 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 17 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 18 N -0.89 -24.96 13.29 55.43 0.74 -24.23 16 19 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 N -0.28 -6.53 12.56 33.65 0.42 -6.11 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.16 3.08 5.82 -52.49 -0.31 2.78 16 28 H 0.43 8.04 7.55 -40.82 -0.31 7.73 16 29 H 0.21 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.05 1.15 7.50 -51.93 -0.39 0.76 16 31 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 305.95 15.07 4.61 4.61 Total: -1.00 -32.35 305.95 -6.07 -38.43 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -2.66 Total: 4.95 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -2.55 Total: -0.73 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 1.99 Total: -55.88 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.07 Total: -8.68 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -2.51 Total: 1.03 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.35 -6.07 -38.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520111667.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.302 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds