Wall clock time and date at job start Tue Mar 31 2020 07:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39759 * 125.83975 * 2 1 4 4 C 1.36130 * 107.82513 * 180.02562 * 3 2 1 5 5 N 1.39401 * 126.21623 * 180.02562 * 4 3 2 6 6 C 1.34772 * 119.99999 * 359.97438 * 5 4 3 7 7 O 1.21614 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.47421 * 119.99878 * 180.02562 * 6 5 4 9 9 C 1.37996 * 124.15523 * 179.72629 * 8 6 5 10 10 S 1.72109 * 104.03226 * 179.97438 * 9 8 6 11 11 N 1.56401 * 96.15149 * 0.28106 * 10 9 8 12 12 N 1.27415 * 109.88453 * 359.82775 * 11 10 9 13 13 N 1.35265 * 107.56522 * 0.02562 * 4 3 2 14 14 C 1.46504 * 126.04932 * 180.02562 * 13 4 3 15 15 C 1.50693 * 109.47102 * 270.00012 * 14 13 4 16 16 H 1.08004 * 120.00247 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00172 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99717 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00280 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46993 * 59.99969 * 19 17 15 21 21 H 1.48496 * 109.47184 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46779 * 300.00189 * 19 17 15 23 23 N 1.30853 * 125.83761 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.46956 * 270.02227 * 1 2 3 25 25 H 1.09003 * 109.46721 * 30.01961 * 1 2 3 26 26 H 1.08993 * 109.47080 * 150.02308 * 1 2 3 27 27 H 1.07997 * 126.08345 * 0.02659 * 3 2 1 28 28 H 0.97001 * 120.00005 * 180.02562 * 5 4 3 29 29 H 1.07996 * 127.98643 * 0.03034 * 9 8 6 30 30 H 1.08999 * 109.46543 * 30.00152 * 14 13 4 31 31 H 1.08997 * 109.47063 * 149.99676 * 14 13 4 32 32 H 0.96992 * 120.00101 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6199 0.7120 -0.0006 5 7 4.7510 1.5268 -0.0003 6 6 4.6155 2.8677 0.0002 7 8 3.5065 3.3668 -0.0002 8 6 5.8116 3.7294 -0.0001 9 6 5.7728 5.1088 -0.0051 10 16 7.4301 5.5729 -0.0021 11 7 8.0109 4.1207 -0.0029 12 7 7.0593 3.2734 -0.0017 13 7 3.6093 -0.6406 -0.0015 14 6 4.7870 -1.5120 -0.0018 15 6 5.1911 -1.8098 -1.4227 16 1 4.6274 -1.3915 -2.2435 17 6 6.2812 -2.6156 -1.6750 18 7 6.9680 -3.1246 -0.6756 19 14 6.7826 -2.9842 -3.4363 20 1 7.1057 -1.7143 -4.1350 21 1 7.9770 -3.8665 -3.4366 22 1 5.6639 -3.6641 -4.1373 23 7 2.2731 -1.0608 -0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8901 -0.5134 27 1 1.9902 2.1596 0.0004 28 1 5.6355 1.1287 -0.0011 29 1 4.9033 5.7492 -0.0091 30 1 5.6082 -1.0130 0.5126 31 1 4.5496 -2.4439 0.5113 32 1 7.7346 -3.6917 -0.8530 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520111667.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:15 Heat of formation + Delta-G solvation = 94.882495 kcal Electronic energy + Delta-G solvation = -20425.373783 eV Core-core repulsion = 17128.859847 eV Total energy + Delta-G solvation = -3296.513936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.66156 -41.97939 -40.31704 -36.38841 -35.67981 -33.88081 -33.35132 -30.83174 -30.00006 -28.19245 -27.81819 -25.56262 -24.67883 -22.45881 -21.56961 -21.31695 -19.81329 -18.92620 -18.43593 -17.40142 -17.31093 -17.11429 -16.56772 -16.36742 -16.02209 -15.50353 -15.47121 -14.61008 -14.44837 -14.07237 -13.70616 -13.60550 -13.41731 -13.16951 -13.07115 -12.93413 -12.72757 -12.31662 -12.04656 -11.74594 -11.71127 -11.37270 -11.24309 -11.18234 -10.94737 -10.78301 -9.68339 -9.14359 -8.38524 -6.56133 -0.98437 -0.10412 0.05988 0.48760 1.01639 1.27626 1.34558 1.35921 1.45276 1.77817 2.09379 2.09889 2.32098 2.57206 2.92058 3.50047 3.63396 3.80890 4.19050 4.32513 4.55732 4.68407 4.74149 4.82044 4.92485 4.94478 5.18956 5.21943 5.47967 5.73830 5.92918 5.98961 6.10407 6.39649 6.53210 6.71152 6.97558 7.15511 8.68269 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.010922 B = 0.005790 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.062263 B = 4835.176861 C = 6963.767634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.060 3.940 3 C -0.296 4.296 4 C 0.292 3.708 5 N -0.627 5.627 6 C 0.615 3.385 7 O -0.511 6.511 8 C -0.045 4.045 9 C -0.222 4.222 10 S 0.583 5.417 11 N -0.334 5.334 12 N -0.243 5.243 13 N -0.366 5.366 14 C 0.272 3.728 15 C -0.558 4.558 16 H 0.049 0.951 17 C 0.026 3.974 18 N -0.914 5.914 19 Si 0.969 3.031 20 H -0.269 1.269 21 H -0.270 1.270 22 H -0.273 1.273 23 N -0.326 5.326 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.176 0.824 28 H 0.423 0.577 29 H 0.241 0.759 30 H 0.041 0.959 31 H 0.031 0.969 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.894 20.973 1.780 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C -0.328 4.328 4 C 0.070 3.930 5 N -0.273 5.273 6 C 0.399 3.601 7 O -0.385 6.385 8 C -0.193 4.193 9 C -0.378 4.378 10 S 0.718 5.282 11 N -0.315 5.315 12 N -0.112 5.112 13 N -0.151 5.151 14 C 0.154 3.846 15 C -0.596 4.596 16 H 0.067 0.933 17 C -0.176 4.176 18 N -0.552 5.552 19 Si 0.793 3.207 20 H -0.194 1.194 21 H -0.195 1.195 22 H -0.198 1.198 23 N -0.151 5.151 24 H 0.110 0.890 25 H 0.116 0.884 26 H 0.091 0.909 27 H 0.193 0.807 28 H 0.261 0.739 29 H 0.258 0.742 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.396 19.906 1.848 19.995 hybrid contribution -0.378 -0.613 -0.693 0.999 sum -0.774 19.293 1.156 19.343 Atomic orbital electron populations 1.20249 0.83498 1.04077 1.04040 1.22946 0.98871 0.89850 0.98820 1.21524 0.88409 1.01194 1.21662 1.18276 0.89082 0.82985 1.02680 1.42657 1.08345 1.05671 1.70647 1.16773 0.87250 0.80012 0.76104 1.90731 1.24870 1.73846 1.49039 1.22085 0.91788 0.93584 1.11846 1.29332 1.09768 0.96704 1.02027 1.81055 0.88849 1.12490 1.45762 1.78276 1.25773 1.03382 1.24065 1.71645 0.96646 1.29166 1.13785 1.49170 1.06469 1.02719 1.56756 1.19203 0.78561 0.89004 0.97873 1.21376 1.13884 1.32731 0.91586 0.93306 1.25720 0.95298 0.94343 1.02225 1.69984 1.19414 1.32733 1.33047 0.85438 0.77976 0.78561 0.78739 1.19414 1.19490 1.19771 1.77330 0.86112 1.23717 1.27898 0.89038 0.88448 0.90909 0.80652 0.73915 0.74217 0.94094 0.95131 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.62 10.44 71.24 0.74 -0.87 16 2 C 0.06 2.39 7.21 43.07 0.31 2.70 16 3 C -0.30 -11.95 9.58 22.15 0.21 -11.74 16 4 C 0.29 12.94 7.66 131.35 1.01 13.94 16 5 N -0.63 -24.50 5.41 -311.54 -1.69 -26.19 16 6 C 0.61 20.45 7.77 86.66 0.67 21.12 16 7 O -0.51 -17.45 13.92 -4.08 -0.06 -17.51 16 8 C -0.05 -1.20 6.87 41.35 0.28 -0.92 16 9 C -0.22 -3.49 11.21 67.76 0.76 -2.73 16 10 S 0.58 7.13 23.38 -56.49 -1.32 5.81 16 11 N -0.33 -8.15 12.49 37.02 0.46 -7.69 16 12 N -0.24 -7.23 11.24 -50.35 -0.57 -7.80 16 13 N -0.37 -18.23 3.60 -348.77 -1.26 -19.48 16 14 C 0.27 14.79 6.01 85.63 0.51 15.30 16 15 C -0.56 -31.94 9.39 25.60 0.24 -31.70 16 16 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 17 C 0.03 1.44 5.46 84.66 0.46 1.90 16 18 N -0.91 -52.49 13.29 21.45 0.28 -52.20 16 19 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 N -0.33 -15.60 12.56 -47.45 -0.60 -16.19 16 24 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 27 H 0.18 6.51 5.82 -2.91 -0.02 6.50 16 28 H 0.42 16.95 7.55 -92.71 -0.70 16.25 16 29 H 0.24 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.04 2.21 7.50 -2.39 -0.02 2.20 16 31 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -73.21 305.95 2.99 -70.22 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.49 Total: 17.95 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 5.21 Total: 7.00 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -3.36 Total: -129.55 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.06 Total: -17.51 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 7.13 SS G_CDS: -1.32 Total: 5.81 kcal Total: -73.21 2.99 -70.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520111667.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.098 kcal (2) G-P(sol) polarization free energy of solvation -73.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds