Wall clock time and date at job start Tue Mar 31 2020 07:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99640 * 2 1 4 4 H 1.48506 * 109.46904 * 269.99895 * 3 2 1 5 5 H 1.48498 * 109.47042 * 29.99417 * 3 2 1 6 6 H 1.48496 * 109.47085 * 150.00117 * 3 2 1 7 7 C 1.37878 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99609 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99639 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.46915 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00254 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47209 * 179.97438 * 11 10 9 13 13 N 1.30974 * 126.43290 * 90.00332 * 12 11 10 14 14 C 1.35229 * 105.57846 * 179.97438 * 13 12 11 15 15 C 1.48399 * 126.41376 * 179.97438 * 14 13 12 16 16 C 1.39345 * 120.10954 * 359.72229 * 15 14 13 17 17 C 1.37989 * 119.89350 * 179.79107 * 16 15 14 18 18 C 1.38450 * 120.10413 * 0.48692 * 17 16 15 19 19 Cl 1.73600 * 119.89228 * 179.76575 * 18 17 16 20 20 C 1.38451 * 120.21490 * 359.74794 * 18 17 16 21 21 C 1.37983 * 120.10690 * 0.02562 * 20 18 17 22 22 N 1.30769 * 107.16753 * 0.02562 * 14 13 12 23 23 O 1.21283 * 110.09760 * 359.97438 * 22 14 13 24 24 H 0.97000 * 120.00175 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46954 * 60.00220 * 9 7 2 26 26 H 1.08992 * 109.47590 * 300.00102 * 9 7 2 27 27 H 1.00900 * 111.00612 * 303.95557 * 10 9 7 28 28 H 1.09003 * 109.46555 * 60.00295 * 11 10 9 29 29 H 1.09001 * 109.46913 * 300.00487 * 11 10 9 30 30 H 1.08001 * 120.05345 * 0.02562 * 16 15 14 31 31 H 1.07996 * 119.94695 * 180.23315 * 17 16 15 32 32 H 1.07999 * 119.94475 * 179.97438 * 20 18 17 33 33 H 1.08006 * 120.05274 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6156 0.0015 11 6 1.5056 -4.9070 0.0020 12 6 2.5151 -6.0258 0.0011 13 7 3.0370 -6.6034 1.0544 14 6 3.8828 -7.5420 0.5722 15 6 4.7200 -8.4686 1.3739 16 6 4.6834 -8.4169 2.7659 17 6 5.4604 -9.2836 3.5069 18 6 6.2831 -10.1967 2.8695 19 17 7.2629 -11.2804 3.8072 20 6 6.3265 -10.2487 1.4866 21 6 5.5497 -9.3893 0.7370 22 7 3.8256 -7.4792 -0.7327 23 8 3.0461 -6.6154 -1.0747 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5574 -0.8880 26 1 0.6248 -2.5563 0.8919 27 1 2.8401 -3.5489 -0.7804 28 1 0.8803 -4.9816 -0.8878 29 1 0.8810 -4.9813 0.8922 30 1 4.0451 -7.7021 3.2640 31 1 5.4299 -9.2467 4.5858 32 1 6.9701 -10.9624 0.9939 33 1 5.5846 -9.4303 -0.3417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000552110175.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:52 Heat of formation + Delta-G solvation = 85.740774 kcal Electronic energy + Delta-G solvation = -19235.004130 eV Core-core repulsion = 15903.757322 eV Total energy + Delta-G solvation = -3331.246808 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.49038 -39.64196 -36.94092 -36.17549 -35.49539 -33.20148 -32.15541 -31.50150 -30.60629 -27.97056 -25.17179 -24.84961 -23.42047 -22.54124 -21.70973 -21.00944 -18.10988 -18.01837 -17.13842 -16.64343 -16.05302 -15.62958 -15.19273 -14.64207 -14.44969 -14.00280 -13.95864 -13.87251 -13.51795 -12.95427 -12.46892 -12.41404 -12.12510 -11.97303 -11.68894 -11.50046 -11.41556 -11.25368 -10.96989 -10.84200 -10.79451 -10.32612 -9.99310 -9.47495 -9.34686 -8.83902 -8.59073 -7.65067 -6.13159 -4.15740 0.29915 0.89647 1.29662 1.70765 2.31010 2.85090 3.27698 3.34209 3.35018 3.38667 3.39743 3.89824 4.36266 4.44719 4.47936 4.82881 4.86912 5.07491 5.12428 5.22789 5.23995 5.42671 5.50837 5.59698 5.73562 5.79833 5.85292 6.03341 6.09368 6.30465 6.95237 7.18716 7.59750 7.94740 8.06854 8.14758 8.34893 8.91734 9.49640 10.97778 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.028125 B = 0.002453 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.300762 B =11414.012870 C =11934.534448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.064 0.936 9 C 0.196 3.804 10 N -0.681 5.681 11 C 0.146 3.854 12 C 0.212 3.788 13 N -0.464 5.464 14 C 0.201 3.799 15 C -0.008 4.008 16 C -0.062 4.062 17 C -0.112 4.112 18 C -0.022 4.022 19 Cl -0.067 7.067 20 C -0.113 4.113 21 C -0.074 4.074 22 N -0.379 5.379 23 O 0.079 5.921 24 H 0.263 0.737 25 H -0.005 1.005 26 H 0.036 0.964 27 H 0.336 0.664 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.149 0.851 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.383 -21.304 3.515 23.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.557 4.557 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.314 5.314 11 C 0.015 3.985 12 C -0.010 4.010 13 N -0.197 5.197 14 C -0.069 4.069 15 C -0.010 4.010 16 C -0.082 4.082 17 C -0.131 4.131 18 C -0.049 4.049 19 Cl -0.039 7.039 20 C -0.132 4.132 21 C -0.094 4.094 22 N -0.086 5.086 23 O 0.018 5.982 24 H 0.073 0.927 25 H 0.013 0.987 26 H 0.054 0.946 27 H 0.153 0.847 28 H 0.081 0.919 29 H 0.132 0.868 30 H 0.166 0.834 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.891 -21.832 4.182 24.330 hybrid contribution 0.073 0.950 -0.893 1.306 sum 9.964 -20.882 3.289 23.370 Atomic orbital electron populations 1.69944 1.06069 1.27072 1.50409 1.24969 0.94912 0.99437 0.95080 0.86444 0.79801 0.82761 0.78108 1.20639 1.21152 1.19720 1.21099 0.93616 0.89877 1.51063 0.91798 1.19648 0.90307 0.86476 0.96546 1.60794 1.21464 0.99615 1.49521 1.20551 0.89470 0.84495 1.04023 1.29110 0.95954 0.96205 0.79686 1.72025 1.10675 1.08344 1.28660 1.23817 0.98261 0.97116 0.87699 1.17438 0.96553 0.94888 0.92156 1.21262 0.97340 0.97538 0.92036 1.21039 0.96117 0.94904 1.01020 1.21127 0.96594 0.95043 0.92165 1.98383 1.69329 1.63206 1.72934 1.20954 1.00415 1.00256 0.91555 1.21147 0.94034 0.93380 1.00805 1.74830 1.10495 1.08419 1.14883 1.85275 1.41104 1.35611 1.36168 0.92723 0.98707 0.94641 0.84714 0.91852 0.86760 0.83366 0.84028 0.84198 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.61 13.29 55.43 0.74 -24.88 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -13.98 9.32 -34.44 -0.32 -14.30 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.20 4.71 5.44 -4.98 -0.03 4.69 16 10 N -0.68 -13.40 6.48 -116.34 -0.75 -14.15 16 11 C 0.15 2.27 6.31 -4.97 -0.03 2.24 16 12 C 0.21 3.27 8.01 -12.99 -0.10 3.16 16 13 N -0.46 -7.44 11.26 -9.89 -0.11 -7.55 16 14 C 0.20 3.00 7.80 -156.11 -1.22 1.78 16 15 C -0.01 -0.10 5.88 -104.89 -0.62 -0.72 16 16 C -0.06 -0.67 9.70 -39.26 -0.38 -1.05 16 17 C -0.11 -1.02 9.81 -39.59 -0.39 -1.41 16 18 C -0.02 -0.20 6.32 -39.43 -0.25 -0.45 16 19 Cl -0.07 -0.56 28.95 -51.86 -1.50 -2.06 16 20 C -0.11 -0.99 9.81 -39.60 -0.39 -1.38 16 21 C -0.07 -0.76 9.69 -39.26 -0.38 -1.14 16 22 N -0.38 -5.78 11.86 30.97 0.37 -5.41 16 23 O 0.08 1.19 11.29 18.04 0.20 1.40 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.00 -0.12 8.14 -51.93 -0.42 -0.54 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.34 6.35 8.71 -39.29 -0.34 6.00 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 30 H 0.15 1.60 7.88 -52.49 -0.41 1.19 16 31 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.14 1.35 7.87 -52.48 -0.41 0.94 16 LS Contribution 316.80 15.07 4.77 4.77 Total: -1.00 -29.38 316.80 -8.76 -38.14 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -3.25 Total: 0.81 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -4.20 Total: -7.10 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.24 Total: -51.99 kcal Atomic # 8 Polarization: 1.19 SS G_CDS: 0.20 Total: 1.40 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.38 -8.76 -38.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552110175.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.882 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds