Wall clock time and date at job start Tue Mar 31 2020 07:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99640 * 2 1 4 4 H 1.48506 * 109.46904 * 269.99895 * 3 2 1 5 5 H 1.48498 * 109.47042 * 29.99417 * 3 2 1 6 6 H 1.48496 * 109.47085 * 150.00117 * 3 2 1 7 7 C 1.37878 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99609 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99639 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.46915 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00254 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47209 * 179.97438 * 11 10 9 13 13 N 1.30974 * 126.43290 * 90.00332 * 12 11 10 14 14 C 1.35229 * 105.57846 * 179.97438 * 13 12 11 15 15 C 1.48399 * 126.41376 * 179.97438 * 14 13 12 16 16 C 1.39345 * 120.10954 * 359.72229 * 15 14 13 17 17 C 1.37989 * 119.89350 * 179.79107 * 16 15 14 18 18 C 1.38450 * 120.10413 * 0.48692 * 17 16 15 19 19 Cl 1.73600 * 119.89228 * 179.76575 * 18 17 16 20 20 C 1.38451 * 120.21490 * 359.74794 * 18 17 16 21 21 C 1.37983 * 120.10690 * 0.02562 * 20 18 17 22 22 N 1.30769 * 107.16753 * 0.02562 * 14 13 12 23 23 O 1.21283 * 110.09760 * 359.97438 * 22 14 13 24 24 H 0.97000 * 120.00175 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46954 * 60.00220 * 9 7 2 26 26 H 1.08992 * 109.47590 * 300.00102 * 9 7 2 27 27 H 1.00900 * 111.00612 * 303.95557 * 10 9 7 28 28 H 1.09003 * 109.46555 * 60.00295 * 11 10 9 29 29 H 1.09001 * 109.46913 * 300.00487 * 11 10 9 30 30 H 1.08001 * 120.05345 * 0.02562 * 16 15 14 31 31 H 1.07996 * 119.94695 * 180.23315 * 17 16 15 32 32 H 1.07999 * 119.94475 * 179.97438 * 20 18 17 33 33 H 1.08006 * 120.05274 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6156 0.0015 11 6 1.5056 -4.9070 0.0020 12 6 2.5151 -6.0258 0.0011 13 7 3.0370 -6.6034 1.0544 14 6 3.8828 -7.5420 0.5722 15 6 4.7200 -8.4686 1.3739 16 6 4.6834 -8.4169 2.7659 17 6 5.4604 -9.2836 3.5069 18 6 6.2831 -10.1967 2.8695 19 17 7.2629 -11.2804 3.8072 20 6 6.3265 -10.2487 1.4866 21 6 5.5497 -9.3893 0.7370 22 7 3.8256 -7.4792 -0.7327 23 8 3.0461 -6.6154 -1.0747 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5574 -0.8880 26 1 0.6248 -2.5563 0.8919 27 1 2.8401 -3.5489 -0.7804 28 1 0.8803 -4.9816 -0.8878 29 1 0.8810 -4.9813 0.8922 30 1 4.0451 -7.7021 3.2640 31 1 5.4299 -9.2467 4.5858 32 1 6.9701 -10.9624 0.9939 33 1 5.5846 -9.4303 -0.3417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000552110175.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:52 Heat of formation + Delta-G solvation = 66.647846 kcal Electronic energy + Delta-G solvation = -19235.832061 eV Core-core repulsion = 15903.757322 eV Total energy + Delta-G solvation = -3332.074739 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.67131 -40.42540 -37.71698 -37.60951 -36.71844 -34.89401 -33.65276 -32.27557 -31.57018 -29.65092 -26.83215 -25.88291 -24.44256 -23.55436 -23.43237 -22.06852 -19.24837 -19.20029 -18.53067 -17.97999 -17.08441 -16.92620 -16.47891 -16.27117 -15.47808 -15.24476 -14.99328 -14.76244 -14.64256 -14.40436 -14.00973 -13.43427 -13.34195 -13.18210 -12.99695 -12.73613 -12.70350 -12.61539 -12.39875 -12.22509 -12.06260 -11.86602 -11.43726 -11.26256 -10.64610 -10.22070 -9.69423 -9.29403 -8.21432 -6.31002 -0.60762 0.13585 0.15246 0.99442 1.23283 1.44276 1.45344 1.56437 1.63096 2.32933 2.42570 2.53353 2.78824 3.13326 3.55342 3.66000 3.77359 3.81457 4.09256 4.21890 4.25492 4.38576 4.49223 4.57533 4.73708 4.85059 5.03555 5.05875 5.07489 5.25638 5.26322 5.53794 5.59272 5.98011 6.29898 6.54419 6.85404 6.96402 7.39033 8.89600 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.028125 B = 0.002453 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.300762 B =11414.012870 C =11934.534448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.211 3.789 10 N -0.686 5.686 11 C 0.151 3.849 12 C 0.212 3.788 13 N -0.480 5.480 14 C 0.202 3.798 15 C -0.036 4.036 16 C -0.067 4.067 17 C -0.108 4.108 18 C -0.022 4.022 19 Cl -0.056 7.056 20 C -0.107 4.107 21 C -0.074 4.074 22 N -0.389 5.389 23 O 0.077 5.923 24 H 0.266 0.734 25 H -0.018 1.018 26 H 0.015 0.985 27 H 0.341 0.659 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.144 0.856 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.785 -22.168 3.868 24.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.575 4.575 8 H 0.079 0.921 9 C 0.084 3.916 10 N -0.320 5.320 11 C 0.021 3.979 12 C -0.009 4.009 13 N -0.213 5.213 14 C -0.068 4.068 15 C -0.038 4.038 16 C -0.087 4.087 17 C -0.127 4.127 18 C -0.049 4.049 19 Cl -0.027 7.027 20 C -0.125 4.125 21 C -0.094 4.094 22 N -0.097 5.097 23 O 0.018 5.982 24 H 0.075 0.925 25 H 0.000 1.000 26 H 0.033 0.967 27 H 0.158 0.842 28 H 0.105 0.895 29 H 0.137 0.863 30 H 0.161 0.839 31 H 0.180 0.820 32 H 0.182 0.818 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.301 -22.714 4.521 25.770 hybrid contribution -0.300 1.070 -0.946 1.459 sum 11.001 -21.644 3.576 24.541 Atomic orbital electron populations 1.70048 1.07477 1.28044 1.51274 1.25820 0.95755 1.02972 0.94666 0.85410 0.78475 0.78475 0.78407 1.19754 1.20777 1.19323 1.21477 0.93768 0.91417 1.50862 0.92059 1.19271 0.90255 0.87262 0.94836 1.60567 1.21063 1.00295 1.50033 1.20520 0.89436 0.82556 1.05435 1.28921 0.95910 0.96212 0.79853 1.72025 1.11238 1.08972 1.29106 1.24276 0.97856 0.96879 0.87754 1.17629 0.97742 0.95801 0.92674 1.21275 0.97809 0.98023 0.91628 1.21228 0.95323 0.94152 1.01968 1.21274 0.96276 0.94859 0.92507 1.98393 1.68906 1.62720 1.72655 1.21197 0.99895 0.99921 0.91506 1.21229 0.93815 0.93162 1.01175 1.74810 1.10901 1.08788 1.15172 1.85259 1.41193 1.35716 1.35991 0.92533 1.00015 0.96693 0.84197 0.89494 0.86255 0.83851 0.82029 0.81778 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.43 13.29 21.45 0.28 -53.15 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.97 42.99 29.54 68.60 2.03 45.01 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.54 -29.12 9.32 25.60 0.24 -28.88 16 8 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 9 C 0.21 10.27 5.44 85.56 0.47 10.74 16 10 N -0.69 -27.01 6.48 -522.00 -3.38 -30.40 16 11 C 0.15 4.64 6.31 85.55 0.54 5.18 16 12 C 0.21 6.49 8.01 88.36 0.71 7.20 16 13 N -0.48 -15.34 11.26 -302.52 -3.41 -18.75 16 14 C 0.20 5.98 7.80 137.28 1.07 7.05 16 15 C -0.04 -0.88 5.88 -20.04 -0.12 -1.00 16 16 C -0.07 -1.41 9.70 22.48 0.22 -1.19 16 17 C -0.11 -1.78 9.81 22.26 0.22 -1.57 16 18 C -0.02 -0.34 6.32 22.37 0.14 -0.20 16 19 Cl -0.06 -0.78 28.95 -2.72 -0.08 -0.86 16 20 C -0.11 -1.64 9.81 22.26 0.22 -1.42 16 21 C -0.07 -1.43 9.69 22.48 0.22 -1.21 16 22 N -0.39 -11.72 11.86 -59.14 -0.70 -12.43 16 23 O 0.08 2.30 11.29 74.63 0.84 3.15 16 24 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 25 H -0.02 -0.91 8.14 -2.39 -0.02 -0.92 16 26 H 0.01 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.34 12.83 8.71 -89.69 -0.78 12.05 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 30 H 0.14 3.08 7.88 -2.91 -0.02 3.06 16 31 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 32 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 33 H 0.14 2.62 7.87 -2.91 -0.02 2.60 16 Total: -1.00 -61.90 316.80 0.34 -61.56 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.38 Total: 10.34 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 4.38 Total: -4.48 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -7.20 Total: -114.72 kcal Atomic # 8 Polarization: 2.30 SS G_CDS: 0.84 Total: 3.15 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -61.90 0.34 -61.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552110175.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.211 kcal (2) G-P(sol) polarization free energy of solvation -61.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds