Wall clock time and date at job start Tue Mar 31 2020 07:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00140 * 2 1 4 4 H 1.48505 * 109.46712 * 269.99524 * 3 2 1 5 5 H 1.48502 * 109.47571 * 29.99133 * 3 2 1 6 6 H 1.48498 * 109.47204 * 149.99554 * 3 2 1 7 7 C 1.37875 * 119.99654 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00161 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99763 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.47210 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00115 * 180.02562 * 10 9 7 12 12 C 1.50705 * 109.46984 * 179.97438 * 11 10 9 13 13 N 1.30977 * 126.43723 * 90.29654 * 12 11 10 14 14 C 1.35218 * 105.57863 * 180.13704 * 13 12 11 15 15 C 1.48423 * 126.41528 * 179.84192 * 14 13 12 16 16 C 1.39350 * 120.11320 * 179.71802 * 15 14 13 17 17 C 1.38001 * 119.90398 * 180.28047 * 16 15 14 18 18 C 1.38322 * 120.13316 * 359.46786 * 17 16 15 19 19 C 1.38414 * 120.23075 * 0.55362 * 18 17 16 20 20 Cl 1.73597 * 119.95623 * 179.72228 * 19 18 17 21 21 C 1.38165 * 120.08833 * 359.70601 * 19 18 17 22 22 N 1.30758 * 107.17062 * 359.58571 * 14 13 12 23 23 O 1.21295 * 110.09989 * 0.26277 * 22 14 13 24 24 H 0.97001 * 120.00208 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47033 * 60.00161 * 9 7 2 26 26 H 1.08993 * 109.47055 * 299.99574 * 9 7 2 27 27 H 1.00912 * 110.99735 * 303.95481 * 10 9 7 28 28 H 1.09003 * 109.47190 * 59.99806 * 11 10 9 29 29 H 1.08998 * 109.47067 * 299.99774 * 11 10 9 30 30 H 1.08002 * 120.04477 * 359.97438 * 16 15 14 31 31 H 1.08002 * 119.93132 * 179.74946 * 17 16 15 32 32 H 1.08005 * 119.88404 * 180.27864 * 18 17 16 33 33 H 1.08005 * 120.06604 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 -1.4002 5 1 1.4466 2.6528 0.6998 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4696 -2.6183 0.0022 12 6 5.9338 -4.0521 0.0026 13 7 6.1794 -4.7906 -1.0508 14 6 6.5629 -5.9944 -0.5690 15 6 6.9477 -7.1825 -1.3710 16 6 7.3289 -8.3621 -0.7345 17 6 7.6915 -9.4624 -1.4844 18 6 7.6666 -9.3999 -2.8660 19 6 7.2893 -8.2309 -3.5040 20 17 7.2676 -8.1581 -5.2383 21 6 6.9296 -7.1220 -2.7624 22 7 6.5365 -5.9142 0.7359 23 8 6.1779 -4.8072 1.0782 24 1 -0.4850 0.8400 -0.0004 25 1 3.8744 -0.6801 0.8911 26 1 3.8751 -0.6806 -0.8888 27 1 3.6252 -3.0956 0.7822 28 1 5.8458 -2.1147 0.8926 29 1 5.8472 -2.1141 -0.8873 30 1 7.3453 -8.4136 0.3442 31 1 7.9909 -10.3756 -0.9916 32 1 7.9468 -10.2648 -3.4490 33 1 6.6357 -6.2100 -3.2606 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000552437483.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:30 Heat of formation + Delta-G solvation = 69.456940 kcal Electronic energy + Delta-G solvation = -19365.176685 eV Core-core repulsion = 16033.223757 eV Total energy + Delta-G solvation = -3331.952928 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.69081 -40.41859 -37.72997 -37.61224 -36.79034 -34.86437 -33.77591 -32.12001 -31.68297 -30.09008 -26.90447 -26.01526 -24.32195 -23.45305 -23.18111 -22.08555 -19.34851 -19.26542 -18.77332 -17.88094 -17.24283 -16.86906 -16.34522 -16.15003 -15.60147 -15.48351 -15.09255 -14.78955 -14.70236 -14.53684 -14.17191 -13.52218 -13.36756 -13.18640 -12.85195 -12.71331 -12.67144 -12.49821 -12.40187 -12.16837 -11.97791 -11.83968 -11.54540 -11.40541 -10.78375 -10.03367 -9.80497 -9.32666 -8.27323 -6.33505 -0.54973 0.03714 0.16437 1.00353 1.25218 1.41891 1.43612 1.53812 1.62516 2.32344 2.38084 2.54225 2.78483 3.07654 3.46666 3.69451 3.76956 3.92966 3.98062 4.21054 4.21959 4.36531 4.47880 4.57267 4.72099 4.77428 4.83025 5.05898 5.06573 5.16025 5.23124 5.50345 5.58888 5.81039 6.39268 6.50864 6.74701 6.94875 7.30992 8.89610 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.021969 B = 0.002849 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.222645 B = 9827.213394 C =10593.991827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.236 1.236 7 C -0.532 4.532 8 H 0.032 0.968 9 C 0.177 3.823 10 N -0.689 5.689 11 C 0.149 3.851 12 C 0.210 3.790 13 N -0.484 5.484 14 C 0.201 3.799 15 C -0.030 4.030 16 C -0.084 4.084 17 C -0.095 4.095 18 C -0.084 4.084 19 C -0.046 4.046 20 Cl -0.062 7.062 21 C -0.080 4.080 22 N -0.386 5.386 23 O 0.079 5.921 24 H 0.267 0.733 25 H 0.010 0.990 26 H 0.038 0.962 27 H 0.342 0.658 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.142 0.858 31 H 0.179 0.821 32 H 0.168 0.832 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.319 -17.219 -3.262 27.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.159 1.159 7 C -0.571 4.571 8 H 0.051 0.949 9 C 0.049 3.951 10 N -0.322 5.322 11 C 0.019 3.981 12 C -0.011 4.011 13 N -0.217 5.217 14 C -0.069 4.069 15 C -0.032 4.032 16 C -0.103 4.103 17 C -0.113 4.113 18 C -0.103 4.103 19 C -0.073 4.073 20 Cl -0.033 7.033 21 C -0.101 4.101 22 N -0.094 5.094 23 O 0.020 5.980 24 H 0.076 0.924 25 H 0.027 0.973 26 H 0.056 0.944 27 H 0.160 0.840 28 H 0.115 0.885 29 H 0.145 0.855 30 H 0.160 0.840 31 H 0.196 0.804 32 H 0.186 0.814 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 21.375 -17.885 -3.983 28.154 hybrid contribution -0.462 1.316 0.702 1.562 sum 20.913 -16.569 -3.281 26.882 Atomic orbital electron populations 1.70068 1.08517 1.28339 1.52197 1.25945 0.95645 1.03638 0.93976 0.85608 0.79703 0.77682 0.79278 1.19212 1.21239 1.15895 1.21304 0.91545 0.93342 1.50872 0.94932 1.19824 0.93539 0.85300 0.96400 1.60372 1.04482 1.16672 1.50697 1.20628 0.89794 0.81556 1.06155 1.29004 0.94046 0.98306 0.79765 1.72032 1.18418 1.01934 1.29318 1.24223 1.00524 0.94307 0.87818 1.17368 1.04479 0.89976 0.91411 1.21495 0.96051 0.91242 1.01560 1.21460 0.98030 0.99150 0.92671 1.21639 0.96613 0.96679 0.95370 1.20889 1.05086 0.96012 0.85295 1.98389 1.97117 1.98619 1.09155 1.21044 0.97998 0.98811 0.92201 1.74803 1.19716 0.99914 1.14936 1.85256 1.60411 1.16393 1.35958 0.92371 0.97277 0.94358 0.83987 0.88487 0.85545 0.84000 0.80379 0.81413 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.77 13.96 21.45 0.30 -58.47 16 2 C 0.01 0.30 5.47 84.65 0.46 0.76 16 3 Si 0.95 41.63 27.47 68.60 1.88 43.51 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.24 -9.06 6.54 99.48 0.65 -8.41 16 7 C -0.53 -29.75 9.87 25.60 0.25 -29.50 16 8 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 9 C 0.18 7.63 4.51 85.56 0.39 8.02 16 10 N -0.69 -25.78 6.48 -521.98 -3.38 -29.16 16 11 C 0.15 4.10 6.31 85.56 0.54 4.64 16 12 C 0.21 6.18 8.01 88.36 0.71 6.89 16 13 N -0.48 -15.50 11.26 -302.50 -3.41 -18.91 16 14 C 0.20 6.00 7.80 137.30 1.07 7.07 16 15 C -0.03 -0.75 5.88 -20.04 -0.12 -0.86 16 16 C -0.08 -1.53 9.69 22.48 0.22 -1.31 16 17 C -0.10 -1.14 10.03 22.23 0.22 -0.92 16 18 C -0.08 -1.09 9.82 22.33 0.22 -0.87 16 19 C -0.05 -0.87 6.31 22.29 0.14 -0.72 16 20 Cl -0.06 -1.13 28.95 -2.72 -0.08 -1.20 16 21 C -0.08 -1.88 9.48 22.50 0.21 -1.67 16 22 N -0.39 -11.50 11.86 -59.13 -0.70 -12.20 16 23 O 0.08 2.29 11.29 74.65 0.84 3.13 16 24 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 25 H 0.01 0.38 7.20 -2.39 -0.02 0.37 16 26 H 0.04 1.60 7.57 -2.39 -0.02 1.58 16 27 H 0.34 12.75 8.71 -89.68 -0.78 11.97 16 28 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.14 2.42 7.87 -2.91 -0.02 2.40 16 31 H 0.18 0.79 8.06 -2.91 -0.02 0.76 16 32 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.13 3.44 7.88 -2.91 -0.02 3.42 16 Total: -1.00 -69.04 313.20 0.10 -68.94 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.32 Total: 12.83 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 4.32 Total: -8.48 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -7.19 Total: -118.73 kcal Atomic # 8 Polarization: 2.29 SS G_CDS: 0.84 Total: 3.13 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.88 Total: 43.51 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.20 kcal Total: -69.04 0.10 -68.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552437483.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.402 kcal (2) G-P(sol) polarization free energy of solvation -69.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds