Wall clock time and date at job start Tue Mar 31 2020 06:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00221 * 2 1 4 4 N 1.46492 * 109.46741 * 125.00320 * 3 2 1 5 5 C 1.46503 * 120.00059 * 269.99959 * 4 3 2 6 6 C 1.50709 * 109.47109 * 270.00216 * 5 4 3 7 7 H 1.07998 * 119.99468 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99928 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00229 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00039 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47087 * 90.00217 * 10 8 6 12 12 H 1.48500 * 109.47270 * 210.00683 * 10 8 6 13 13 H 1.48501 * 109.47322 * 330.00549 * 10 8 6 14 14 C 1.38696 * 120.00146 * 90.00261 * 4 3 2 15 15 N 1.30242 * 126.17004 * 180.02562 * 14 4 3 16 16 N 1.26103 * 117.62309 * 179.97438 * 15 14 4 17 17 C 1.29323 * 117.96902 * 0.02562 * 16 15 14 18 18 C 1.50698 * 126.06233 * 179.97438 * 17 16 15 19 19 F 1.39894 * 109.47398 * 5.02074 * 18 17 16 20 20 F 1.39904 * 109.46826 * 125.02723 * 18 17 16 21 21 F 1.39909 * 109.46753 * 245.02190 * 18 17 16 22 22 S 1.76482 * 107.86744 * 359.97438 * 17 16 15 23 23 H 1.07999 * 120.00011 * 179.97438 * 1 2 3 24 24 H 1.07998 * 120.00032 * 359.97438 * 1 2 3 25 25 H 1.08005 * 119.99653 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.46843 * 5.00351 * 3 2 1 27 27 H 1.09002 * 109.46969 * 245.00259 * 3 2 1 28 28 H 1.09001 * 109.46999 * 30.00138 * 5 4 3 29 29 H 1.08999 * 109.47149 * 150.00342 * 5 4 3 30 30 H 0.97004 * 120.00736 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3317 1.1313 5 6 2.5590 1.8647 2.4249 6 6 2.8445 3.3435 2.4805 7 1 3.3035 3.8368 1.6365 8 6 2.5187 4.0665 3.6083 9 7 1.9593 3.4657 4.6358 10 14 2.8732 5.8992 3.6776 11 1 1.7010 6.6500 3.1603 12 1 3.1367 6.2997 5.0831 13 1 4.0638 6.2050 2.8443 14 6 4.2862 0.8524 0.9779 15 7 5.2076 0.8182 1.8978 16 7 6.3330 0.3456 1.5809 17 6 6.4958 -0.0715 0.3676 18 6 7.7570 -0.6655 -0.2045 19 9 8.7082 -0.8075 0.8114 20 9 7.4733 -1.9193 -0.7566 21 9 8.2604 0.1792 -1.1999 22 16 4.9788 0.1784 -0.4990 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3587 2.1316 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 1.4888 1.6965 2.5459 29 1 3.0991 1.3600 3.2259 30 1 1.7304 3.9743 5.4295 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568018292.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:46 Heat of formation + Delta-G solvation = -55.262649 kcal Electronic energy + Delta-G solvation = -20851.084985 eV Core-core repulsion = 16973.910776 eV Total energy + Delta-G solvation = -3877.174209 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.050 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.11196 -47.66183 -47.59339 -40.61554 -37.52650 -33.78985 -32.77614 -31.10514 -28.16197 -27.64594 -25.21821 -24.24464 -22.52968 -20.31905 -19.88860 -19.24933 -18.53521 -17.88625 -17.73508 -16.67672 -15.99354 -15.34895 -15.28720 -14.70812 -14.48414 -14.40807 -14.05231 -14.04449 -13.76544 -13.75617 -13.40894 -13.32785 -12.64812 -12.48471 -12.15723 -11.63685 -11.48604 -11.11890 -10.83095 -10.67350 -10.39533 -10.26503 -9.75822 -9.67558 -9.51430 -9.43070 -8.64176 -7.56263 -6.24987 -4.33424 0.70297 0.76507 1.33846 2.12173 2.54432 2.94580 3.19131 3.24873 3.27566 3.33206 3.64647 4.21619 4.27732 4.37023 4.81948 4.99051 5.09395 5.17910 5.29132 5.39136 5.69690 5.86230 6.39885 6.53943 6.63673 7.02428 7.26147 7.49768 7.69083 7.89539 8.68169 8.97830 9.33098 10.82009 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.005233 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.281460 B = 5349.649603 C = 6563.758017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.179 4.179 3 C 0.139 3.861 4 N -0.517 5.517 5 C 0.249 3.751 6 C -0.539 4.539 7 H 0.061 0.939 8 C 0.069 3.931 9 N -0.888 5.888 10 Si 0.902 3.098 11 H -0.279 1.279 12 H -0.283 1.283 13 H -0.273 1.273 14 C 0.346 3.654 15 N -0.327 5.327 16 N -0.138 5.138 17 C -0.176 4.176 18 C 0.574 3.426 19 F -0.158 7.158 20 F -0.170 7.170 21 F -0.169 7.169 22 S 0.054 5.946 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 -8.004 -12.241 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.199 4.199 3 C 0.016 3.984 4 N -0.226 5.226 5 C 0.129 3.871 6 C -0.578 4.578 7 H 0.079 0.921 8 C -0.135 4.135 9 N -0.526 5.526 10 Si 0.729 3.271 11 H -0.205 1.205 12 H -0.208 1.208 13 H -0.197 1.197 14 C -0.025 4.025 15 N -0.180 5.180 16 N 0.021 4.979 17 C -0.459 4.459 18 C 0.515 3.485 19 F -0.139 7.139 20 F -0.151 7.151 21 F -0.151 7.151 22 S 0.290 5.710 23 H 0.119 0.881 24 H 0.121 0.879 25 H 0.128 0.872 26 H 0.125 0.875 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.883 -7.819 -11.762 14.249 hybrid contribution 0.321 0.936 0.073 0.992 sum 2.204 -6.883 -11.689 13.743 Atomic orbital electron populations 1.23895 0.95563 1.02292 0.98509 1.23283 0.96554 0.98448 1.01621 1.20932 0.92601 0.96996 0.87854 1.47311 1.03922 1.56314 1.15007 1.19789 0.96330 0.94525 0.76412 1.21307 1.42129 0.92414 1.01906 0.92115 1.24894 0.94525 0.99098 0.95011 1.69909 1.40995 1.36524 1.05167 0.86431 0.78741 0.84277 0.77659 1.20470 1.20823 1.19750 1.27242 0.92617 0.92665 0.89956 1.71653 0.95122 1.26072 1.25182 1.70693 1.13531 1.01703 1.12019 1.28376 0.99270 1.21635 0.96660 1.16488 0.81090 0.75406 0.75517 1.93238 1.65509 1.95539 1.59623 1.93226 1.93581 1.42324 1.86015 1.93236 1.88314 1.71132 1.62398 1.85396 1.07006 1.64048 1.14591 0.88144 0.87934 0.87245 0.87457 0.90335 0.93483 0.92729 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 14.32 29.01 0.42 -1.41 16 2 C -0.18 -2.28 9.85 -36.03 -0.35 -2.63 16 3 C 0.14 2.03 5.88 -5.20 -0.03 2.00 16 4 N -0.52 -9.90 2.55 -176.83 -0.45 -10.35 16 5 C 0.25 5.84 5.31 -5.19 -0.03 5.81 16 6 C -0.54 -13.99 9.39 -34.44 -0.32 -14.32 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 9 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 10 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 14 C 0.35 6.72 8.04 -87.14 -0.70 6.02 16 15 N -0.33 -7.22 10.94 31.00 0.34 -6.88 16 16 N -0.14 -2.82 11.33 33.57 0.38 -2.44 16 17 C -0.18 -3.03 7.08 -13.34 -0.09 -3.13 16 18 C 0.57 8.49 3.57 36.00 0.13 8.62 16 19 F -0.16 -2.41 17.14 2.25 0.04 -2.37 16 20 F -0.17 -2.30 17.30 2.25 0.04 -2.26 16 21 F -0.17 -2.38 17.30 2.25 0.04 -2.34 16 22 S 0.05 0.84 22.25 -107.50 -2.39 -1.55 16 23 H 0.10 0.95 8.06 -52.49 -0.42 0.52 16 24 H 0.10 1.08 7.84 -52.49 -0.41 0.67 16 25 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 26 H 0.11 1.55 7.72 -51.93 -0.40 1.15 16 27 H 0.08 1.00 7.16 -51.93 -0.37 0.63 16 28 H 0.05 1.12 8.07 -51.93 -0.42 0.70 16 29 H 0.05 1.44 7.67 -51.93 -0.40 1.04 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 302.54 15.07 4.56 4.56 Total: -1.00 -28.28 302.54 -5.21 -33.49 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: -2.39 Total: -4.33 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -1.08 Total: 2.69 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 1.01 Total: -43.63 kcal Atomic # 9 Polarization: -7.09 SS G_CDS: 0.12 Total: -6.97 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.39 Total: -1.55 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.28 -5.21 -33.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568018292.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.774 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds