Wall clock time and date at job start Tue Mar 31 2020 06:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00221 * 2 1 4 4 N 1.46492 * 109.46741 * 125.00320 * 3 2 1 5 5 C 1.46503 * 120.00059 * 269.99959 * 4 3 2 6 6 C 1.50709 * 109.47109 * 270.00216 * 5 4 3 7 7 H 1.07998 * 119.99468 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99928 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00229 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00039 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47087 * 90.00217 * 10 8 6 12 12 H 1.48500 * 109.47270 * 210.00683 * 10 8 6 13 13 H 1.48501 * 109.47322 * 330.00549 * 10 8 6 14 14 C 1.38696 * 120.00146 * 90.00261 * 4 3 2 15 15 N 1.30242 * 126.17004 * 180.02562 * 14 4 3 16 16 N 1.26103 * 117.62309 * 179.97438 * 15 14 4 17 17 C 1.29323 * 117.96902 * 0.02562 * 16 15 14 18 18 C 1.50698 * 126.06233 * 179.97438 * 17 16 15 19 19 F 1.39894 * 109.47398 * 5.02074 * 18 17 16 20 20 F 1.39904 * 109.46826 * 125.02723 * 18 17 16 21 21 F 1.39909 * 109.46753 * 245.02190 * 18 17 16 22 22 S 1.76482 * 107.86744 * 359.97438 * 17 16 15 23 23 H 1.07999 * 120.00011 * 179.97438 * 1 2 3 24 24 H 1.07998 * 120.00032 * 359.97438 * 1 2 3 25 25 H 1.08005 * 119.99653 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.46843 * 5.00351 * 3 2 1 27 27 H 1.09002 * 109.46969 * 245.00259 * 3 2 1 28 28 H 1.09001 * 109.46999 * 30.00138 * 5 4 3 29 29 H 1.08999 * 109.47149 * 150.00342 * 5 4 3 30 30 H 0.97004 * 120.00736 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3317 1.1313 5 6 2.5590 1.8647 2.4249 6 6 2.8445 3.3435 2.4805 7 1 3.3035 3.8368 1.6365 8 6 2.5187 4.0665 3.6083 9 7 1.9593 3.4657 4.6358 10 14 2.8732 5.8992 3.6776 11 1 1.7010 6.6500 3.1603 12 1 3.1367 6.2997 5.0831 13 1 4.0638 6.2050 2.8443 14 6 4.2862 0.8524 0.9779 15 7 5.2076 0.8182 1.8978 16 7 6.3330 0.3456 1.5809 17 6 6.4958 -0.0715 0.3676 18 6 7.7570 -0.6655 -0.2045 19 9 8.7082 -0.8075 0.8114 20 9 7.4733 -1.9193 -0.7566 21 9 8.2604 0.1792 -1.1999 22 16 4.9788 0.1784 -0.4990 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3587 2.1316 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 1.4888 1.6965 2.5459 29 1 3.0991 1.3600 3.2259 30 1 1.7304 3.9743 5.4295 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568018292.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:45 Heat of formation + Delta-G solvation = -70.824918 kcal Electronic energy + Delta-G solvation = -20851.759815 eV Core-core repulsion = 16973.910776 eV Total energy + Delta-G solvation = -3877.849040 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.050 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.30287 -48.82460 -48.79744 -42.10479 -38.91354 -35.22341 -34.43336 -32.53587 -29.94220 -28.92733 -26.57177 -25.88304 -24.08267 -21.60182 -21.08490 -20.52221 -19.72264 -19.21644 -19.14254 -18.58199 -17.33530 -16.83805 -16.79436 -16.15028 -15.69637 -15.59098 -15.43223 -15.22268 -14.94236 -14.93603 -14.81193 -14.68896 -14.28819 -13.82429 -13.42206 -13.39477 -12.98940 -12.64818 -12.61698 -12.27748 -12.00352 -11.69584 -11.52788 -11.18948 -10.81971 -10.67295 -10.45850 -9.07717 -8.25041 -6.41769 -0.69634 -0.61876 -0.06714 1.07270 1.30252 1.36761 1.40214 1.45992 1.50143 1.97438 2.34313 2.39243 2.98657 3.05048 3.16424 3.58771 3.86686 3.94161 4.04580 4.22213 4.64538 4.77924 4.97336 5.09779 5.47096 5.62168 5.67280 5.84791 5.88310 5.95037 6.66254 7.28059 7.52975 8.79699 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.005233 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.281460 B = 5349.649603 C = 6563.758017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.199 4.199 3 C 0.136 3.864 4 N -0.525 5.525 5 C 0.269 3.731 6 C -0.546 4.546 7 H 0.055 0.945 8 C 0.020 3.980 9 N -0.921 5.921 10 Si 0.961 3.039 11 H -0.263 1.263 12 H -0.283 1.283 13 H -0.276 1.276 14 C 0.319 3.681 15 N -0.376 5.376 16 N -0.172 5.172 17 C -0.177 4.177 18 C 0.582 3.418 19 F -0.160 7.160 20 F -0.158 7.158 21 F -0.161 7.161 22 S 0.152 5.848 23 H 0.121 0.879 24 H 0.107 0.893 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.041 0.959 29 H 0.017 0.983 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.953 -8.159 -14.391 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.218 4.218 3 C 0.015 3.985 4 N -0.234 5.234 5 C 0.147 3.853 6 C -0.584 4.584 7 H 0.073 0.927 8 C -0.181 4.181 9 N -0.560 5.560 10 Si 0.786 3.214 11 H -0.188 1.188 12 H -0.208 1.208 13 H -0.201 1.201 14 C -0.052 4.052 15 N -0.229 5.229 16 N -0.012 5.012 17 C -0.462 4.462 18 C 0.523 3.477 19 F -0.142 7.142 20 F -0.139 7.139 21 F -0.142 7.142 22 S 0.388 5.612 23 H 0.139 0.861 24 H 0.125 0.875 25 H 0.131 0.869 26 H 0.124 0.876 27 H 0.116 0.884 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.713 -7.988 -13.950 16.166 hybrid contribution 0.407 0.880 0.609 1.145 sum 2.120 -7.108 -13.340 15.264 Atomic orbital electron populations 1.24147 0.95100 1.03550 0.95750 1.23183 0.97052 0.97534 1.04057 1.21170 0.92256 0.98176 0.86909 1.47145 1.04661 1.56872 1.14767 1.19162 0.95164 0.93047 0.77910 1.21573 1.41420 0.93798 1.01639 0.92683 1.25680 0.94450 1.03155 0.94781 1.70010 1.42197 1.38045 1.05730 0.85503 0.78774 0.79666 0.77416 1.18827 1.20817 1.20099 1.27379 0.92427 0.93380 0.92026 1.71610 0.96201 1.27481 1.27595 1.70678 1.13471 1.03422 1.13620 1.29036 1.01099 1.19493 0.96567 1.16249 0.80207 0.75711 0.75543 1.93240 1.65442 1.95552 1.59916 1.93254 1.93472 1.41479 1.85736 1.93257 1.88064 1.71011 1.61891 1.84990 1.04045 1.61778 1.10378 0.86063 0.87483 0.86944 0.87637 0.88429 0.94143 0.96526 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 14.32 67.78 0.97 -1.98 16 2 C -0.20 -4.72 9.85 25.65 0.25 -4.47 16 3 C 0.14 3.82 5.88 85.63 0.50 4.32 16 4 N -0.52 -20.19 2.55 -713.36 -1.82 -22.01 16 5 C 0.27 13.02 5.31 85.64 0.45 13.47 16 6 C -0.55 -28.85 9.39 25.60 0.24 -28.60 16 7 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 8 C 0.02 1.07 5.46 84.65 0.46 1.53 16 9 N -0.92 -52.25 13.29 21.44 0.28 -51.96 16 10 Si 0.96 42.76 29.54 68.60 2.03 44.79 16 11 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 14 C 0.32 12.34 8.04 179.13 1.44 13.78 16 15 N -0.38 -16.95 10.94 -55.84 -0.61 -17.56 16 16 N -0.17 -7.04 11.33 -47.71 -0.54 -7.58 16 17 C -0.18 -5.86 7.08 88.48 0.63 -5.23 16 18 C 0.58 16.05 3.57 71.24 0.25 16.30 16 19 F -0.16 -4.68 17.14 44.97 0.77 -3.91 16 20 F -0.16 -3.87 17.30 44.97 0.78 -3.09 16 21 F -0.16 -4.12 17.30 44.97 0.78 -3.34 16 22 S 0.15 4.35 22.25 -56.49 -1.26 3.10 16 23 H 0.12 1.93 8.06 -2.91 -0.02 1.90 16 24 H 0.11 2.04 7.84 -2.91 -0.02 2.02 16 25 H 0.11 2.59 8.06 -2.91 -0.02 2.57 16 26 H 0.11 2.96 7.72 -2.39 -0.02 2.94 16 27 H 0.10 2.28 7.16 -2.39 -0.02 2.27 16 28 H 0.04 1.98 8.07 -2.39 -0.02 1.96 16 29 H 0.02 0.93 7.67 -2.39 -0.02 0.91 16 30 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -61.80 302.54 6.80 -55.00 By element: Atomic # 1 Polarization: -3.73 SS G_CDS: 1.18 Total: -2.55 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 5.20 Total: 9.12 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -2.68 Total: -99.11 kcal Atomic # 9 Polarization: -12.67 SS G_CDS: 2.33 Total: -10.34 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.26 Total: 3.10 kcal Total: -61.80 6.80 -55.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568018292.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.826 kcal (2) G-P(sol) polarization free energy of solvation -61.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds