Wall clock time and date at job start Tue Mar 31 2020 06:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86798 * 119.99935 * 2 1 4 4 H 1.48499 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46951 * 299.99825 * 3 2 1 6 6 H 1.48492 * 109.47283 * 59.99617 * 3 2 1 7 7 C 1.38795 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99762 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00770 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00499 * 179.97438 * 9 7 2 11 11 C 1.50691 * 109.47483 * 180.02562 * 10 9 7 12 12 O 1.21294 * 119.99918 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00422 * 180.02562 * 11 10 9 14 14 C 1.40032 * 120.00492 * 185.52953 * 13 11 10 15 15 C 1.38577 * 120.13721 * 24.81477 * 14 13 11 16 16 C 1.38611 * 120.35334 * 179.97438 * 15 14 13 17 17 C 1.37712 * 120.56220 * 0.02562 * 16 15 14 18 18 C 1.39804 * 119.90878 * 359.95649 * 17 16 15 19 19 N 1.35915 * 133.39768 * 180.34273 * 18 17 16 20 20 C 1.30766 * 109.63883 * 180.11587 * 19 18 17 21 21 O 1.35288 * 125.03786 * 179.86361 * 20 19 18 22 22 N 1.36333 * 109.91918 * 359.60334 * 20 19 18 23 23 H 0.96992 * 126.37639 * 180.20928 * 22 20 19 24 24 C 1.38547 * 107.24123 * 0.24224 * 22 20 19 25 25 H 0.96998 * 119.99712 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.46841 * 59.99667 * 10 9 7 27 27 H 1.09002 * 109.47164 * 300.00476 * 10 9 7 28 28 H 0.97003 * 119.99777 * 5.53425 * 13 11 10 29 29 H 1.08003 * 119.82384 * 359.97438 * 15 14 13 30 30 H 1.07998 * 119.72356 * 179.97438 * 16 15 14 31 31 H 1.08005 * 120.04135 * 179.97438 * 17 16 15 32 32 H 0.96696 * 114.00616 * 269.69928 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 2.3575 -7.6509 -0.1171 15 6 1.1368 -7.8868 -0.7291 16 6 0.6511 -9.1795 -0.8483 17 6 1.3727 -10.2463 -0.3608 18 6 2.6065 -10.0282 0.2595 19 7 3.5290 -10.8542 0.8198 20 6 4.5316 -10.1489 1.2751 21 8 5.6211 -10.6577 1.8951 22 7 4.3188 -8.8253 1.0271 23 1 4.9114 -8.0938 1.2606 24 6 3.0982 -8.7197 0.3801 25 1 -0.4849 0.8401 -0.0004 26 1 3.1244 -3.7313 0.8906 27 1 3.1245 -3.7314 -0.8894 28 1 3.7978 -6.1860 0.0820 29 1 0.5607 -7.0589 -1.1154 30 1 -0.3017 -9.3516 -1.3267 31 1 0.9861 -11.2502 -0.4578 32 1 5.5317 -10.7248 2.8555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571448373.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:21 Heat of formation + Delta-G solvation = 7.090201 kcal Electronic energy + Delta-G solvation = -19720.046449 eV Core-core repulsion = 16387.432803 eV Total energy + Delta-G solvation = -3332.613646 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.40649 -39.99957 -38.22147 -36.53276 -34.93162 -32.79006 -32.51896 -30.31621 -29.03481 -28.16250 -25.58137 -23.31332 -22.74509 -22.09507 -20.30796 -19.50969 -18.31439 -17.85356 -17.63013 -16.53169 -16.31323 -15.76357 -15.36023 -14.88607 -14.74336 -14.27754 -14.23348 -14.16859 -13.52349 -12.83303 -12.71089 -12.49663 -12.04745 -11.98777 -11.70074 -11.18113 -11.13357 -11.10927 -10.85316 -10.46654 -10.00737 -9.91458 -9.48416 -9.16005 -8.50496 -8.37319 -7.73784 -6.61867 -6.30939 -4.02904 0.71727 1.31041 2.03664 2.38232 2.74831 2.84905 3.15736 3.20080 3.25208 3.45654 3.47697 3.77425 4.10633 4.34125 4.74782 4.91496 4.97118 5.04798 5.10416 5.32481 5.41546 5.52944 5.67714 5.78136 5.95069 6.01312 6.19867 6.37087 6.42380 6.51380 6.83632 7.24755 7.31153 7.50549 7.51103 8.23299 8.26166 9.14757 10.76493 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.030671 B = 0.003115 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.695797 B = 8986.229120 C = 9798.167916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.074 0.926 9 S -0.054 6.054 10 C -0.155 4.155 11 C 0.532 3.468 12 O -0.488 6.488 13 N -0.680 5.680 14 C 0.171 3.829 15 C -0.118 4.118 16 C -0.094 4.094 17 C -0.094 4.094 18 C 0.078 3.922 19 N -0.486 5.486 20 C 0.451 3.549 21 O -0.444 6.444 22 N -0.600 5.600 23 H 0.421 0.579 24 C 0.028 3.972 25 H 0.269 0.731 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.404 0.596 29 H 0.159 0.841 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.246 -17.948 2.074 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.686 4.686 8 H 0.092 0.908 9 S 0.173 5.827 10 C -0.306 4.306 11 C 0.320 3.680 12 O -0.360 6.360 13 N -0.325 5.325 14 C 0.073 3.927 15 C -0.140 4.140 16 C -0.115 4.115 17 C -0.115 4.115 18 C -0.040 4.040 19 N -0.218 5.218 20 C 0.146 3.854 21 O -0.245 6.245 22 N -0.225 5.225 23 H 0.259 0.741 24 C -0.082 4.082 25 H 0.079 0.921 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.239 0.761 29 H 0.176 0.824 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 7.303 -19.087 1.597 20.498 hybrid contribution 3.006 2.603 0.793 4.055 sum 10.309 -16.483 2.390 19.588 Atomic orbital electron populations 1.70019 1.05956 1.27520 1.46614 1.25000 0.95052 0.99100 0.94384 0.86095 0.79536 0.81754 0.77985 1.19620 1.20483 1.20514 1.22887 0.94943 0.91492 1.59294 0.90799 1.85428 1.04220 0.96334 1.96754 1.23559 1.07154 0.94534 1.05308 1.20535 0.86471 0.86160 0.74843 1.90684 1.15126 1.84977 1.45242 1.43679 1.10730 1.04057 1.74039 1.16730 0.95071 0.81311 0.99585 1.21364 0.94920 0.98712 0.99012 1.20887 0.99910 0.91190 0.99468 1.20230 0.91888 0.99889 0.99481 1.18612 0.95815 0.87169 1.02430 1.70685 1.01192 1.31200 1.18695 1.20284 0.88380 0.79061 0.97663 1.84826 1.31488 1.81889 1.26333 1.43297 1.18511 1.08908 1.51777 0.74050 1.18348 0.88280 0.96803 1.04783 0.92109 0.88941 0.88667 0.76119 0.82355 0.84566 0.85065 0.73169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.35 13.22 55.49 0.73 -24.62 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.77 29.55 -169.99 -5.02 15.74 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.72 9.50 30.94 0.29 -14.42 16 8 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 9 S -0.05 -1.38 20.57 -107.50 -2.21 -3.59 16 10 C -0.16 -2.86 6.16 36.00 0.22 -2.64 16 11 C 0.53 9.08 7.65 -10.99 -0.08 9.00 16 12 O -0.49 -9.99 13.03 5.55 0.07 -9.92 16 13 N -0.68 -8.72 5.37 -9.82 -0.05 -8.78 16 14 C 0.17 2.29 6.44 -83.62 -0.54 1.76 16 15 C -0.12 -1.64 8.72 -39.32 -0.34 -1.98 16 16 C -0.09 -1.09 10.01 -39.64 -0.40 -1.48 16 17 C -0.09 -1.10 10.10 -39.19 -0.40 -1.50 16 18 C 0.08 1.03 7.22 -84.70 -0.61 0.42 16 19 N -0.49 -6.37 11.31 -12.26 -0.14 -6.51 16 20 C 0.45 4.68 9.39 -88.96 -0.84 3.84 16 21 O -0.44 -3.21 13.63 -17.56 -0.24 -3.44 16 22 N -0.60 -5.66 6.27 -11.80 -0.07 -5.73 16 23 H 0.42 2.64 8.96 -40.82 -0.37 2.28 16 24 C 0.03 0.34 7.19 -83.69 -0.60 -0.26 16 25 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.09 1.55 8.14 -51.91 -0.42 1.12 16 27 H 0.10 1.61 8.14 -51.91 -0.42 1.18 16 28 H 0.40 3.78 8.79 -40.82 -0.36 3.42 16 29 H 0.16 2.49 5.78 -52.48 -0.30 2.19 16 30 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.41 0.75 9.06 45.56 0.41 1.16 16 LS Contribution 303.24 15.07 4.57 4.57 Total: -1.00 -35.69 303.24 -7.60 -43.29 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -1.85 Total: 4.31 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -3.39 Total: -5.32 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.47 Total: -45.64 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.17 Total: -13.36 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -2.21 Total: -3.59 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.69 -7.60 -43.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571448373.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.383 kcal (2) G-P(sol) polarization free energy of solvation -35.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds