Wall clock time and date at job start Tue Mar 31 2020 06:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86798 * 119.99935 * 2 1 4 4 H 1.48499 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46951 * 299.99825 * 3 2 1 6 6 H 1.48492 * 109.47283 * 59.99617 * 3 2 1 7 7 C 1.38795 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99762 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00770 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00499 * 179.97438 * 9 7 2 11 11 C 1.50691 * 109.47483 * 180.02562 * 10 9 7 12 12 O 1.21294 * 119.99918 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00422 * 180.02562 * 11 10 9 14 14 C 1.40032 * 120.00492 * 185.52953 * 13 11 10 15 15 C 1.38577 * 120.13721 * 24.81477 * 14 13 11 16 16 C 1.38611 * 120.35334 * 179.97438 * 15 14 13 17 17 C 1.37712 * 120.56220 * 0.02562 * 16 15 14 18 18 C 1.39804 * 119.90878 * 359.95649 * 17 16 15 19 19 N 1.35915 * 133.39768 * 180.34273 * 18 17 16 20 20 C 1.30766 * 109.63883 * 180.11587 * 19 18 17 21 21 O 1.35288 * 125.03786 * 179.86361 * 20 19 18 22 22 N 1.36333 * 109.91918 * 359.60334 * 20 19 18 23 23 H 0.96992 * 126.37639 * 180.20928 * 22 20 19 24 24 C 1.38547 * 107.24123 * 0.24224 * 22 20 19 25 25 H 0.96998 * 119.99712 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.46841 * 59.99667 * 10 9 7 27 27 H 1.09002 * 109.47164 * 300.00476 * 10 9 7 28 28 H 0.97003 * 119.99777 * 5.53425 * 13 11 10 29 29 H 1.08003 * 119.82384 * 359.97438 * 15 14 13 30 30 H 1.07998 * 119.72356 * 179.97438 * 16 15 14 31 31 H 1.08005 * 120.04135 * 179.97438 * 17 16 15 32 32 H 0.96696 * 114.00616 * 269.69928 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 2.3575 -7.6509 -0.1171 15 6 1.1368 -7.8868 -0.7291 16 6 0.6511 -9.1795 -0.8483 17 6 1.3727 -10.2463 -0.3608 18 6 2.6065 -10.0282 0.2595 19 7 3.5290 -10.8542 0.8198 20 6 4.5316 -10.1489 1.2751 21 8 5.6211 -10.6577 1.8951 22 7 4.3188 -8.8253 1.0271 23 1 4.9114 -8.0938 1.2606 24 6 3.0982 -8.7197 0.3801 25 1 -0.4849 0.8401 -0.0004 26 1 3.1244 -3.7313 0.8906 27 1 3.1245 -3.7314 -0.8894 28 1 3.7978 -6.1860 0.0820 29 1 0.5607 -7.0589 -1.1154 30 1 -0.3017 -9.3516 -1.3267 31 1 0.9861 -11.2502 -0.4578 32 1 5.5317 -10.7248 2.8555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571448373.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:20 Heat of formation + Delta-G solvation = -23.181250 kcal Electronic energy + Delta-G solvation = -19721.359118 eV Core-core repulsion = 16387.432803 eV Total energy + Delta-G solvation = -3333.926315 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.28797 -41.22418 -39.03228 -37.42515 -36.04564 -34.59114 -33.75246 -31.59141 -29.95037 -29.33961 -27.66114 -24.27639 -23.67100 -23.05966 -21.47990 -20.40241 -19.80357 -18.91464 -18.78135 -17.70706 -17.28404 -16.88758 -16.79737 -16.63944 -15.91000 -15.67667 -15.25201 -15.09399 -14.94754 -14.52586 -13.87355 -13.55053 -13.17000 -12.99880 -12.92449 -12.89378 -12.68562 -12.60790 -12.14807 -11.74160 -11.38981 -11.16930 -11.09057 -10.76077 -10.29731 -9.41977 -8.76020 -8.65269 -8.35915 -6.13609 -0.20541 0.36952 1.20265 1.21423 1.40085 1.41445 1.44200 1.55923 1.70474 2.03188 2.25454 2.69524 2.82018 2.99022 3.24882 3.54472 3.72712 3.97944 4.16017 4.17355 4.23944 4.40797 4.45428 4.54992 4.82472 5.11419 5.25348 5.42042 5.44793 5.54641 5.83853 5.86778 6.19084 6.22676 6.63412 6.66215 6.98618 7.06288 8.73291 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.030671 B = 0.003115 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.695797 B = 8986.229120 C = 9798.167916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.141 6.141 10 C -0.130 4.130 11 C 0.537 3.463 12 O -0.529 6.529 13 N -0.656 5.656 14 C 0.158 3.842 15 C -0.136 4.136 16 C -0.092 4.092 17 C -0.093 4.093 18 C 0.061 3.939 19 N -0.520 5.520 20 C 0.467 3.533 21 O -0.441 6.441 22 N -0.586 5.586 23 H 0.436 0.564 24 C 0.026 3.974 25 H 0.271 0.729 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.423 0.577 29 H 0.136 0.864 30 H 0.159 0.841 31 H 0.151 0.849 32 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.858 -18.596 2.569 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.086 5.914 10 C -0.281 4.281 11 C 0.324 3.676 12 O -0.404 6.404 13 N -0.303 5.303 14 C 0.061 3.939 15 C -0.159 4.159 16 C -0.112 4.112 17 C -0.113 4.113 18 C -0.058 4.058 19 N -0.253 5.253 20 C 0.162 3.838 21 O -0.246 6.246 22 N -0.213 5.213 23 H 0.278 0.722 24 C -0.085 4.085 25 H 0.080 0.920 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.261 0.739 29 H 0.154 0.846 30 H 0.177 0.823 31 H 0.168 0.832 32 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 9.987 -19.757 2.125 22.240 hybrid contribution 2.305 2.589 0.686 3.533 sum 12.292 -17.168 2.811 21.302 Atomic orbital electron populations 1.70179 1.07922 1.28576 1.47987 1.26096 0.95939 1.03260 0.93770 0.84921 0.78658 0.76479 0.78000 1.17990 1.20073 1.20066 1.23239 0.95424 0.91963 1.58811 0.89755 1.85591 1.09786 0.98995 1.97068 1.23368 1.04089 0.93264 1.07395 1.20240 0.86192 0.86402 0.74754 1.90689 1.16884 1.85399 1.47405 1.43266 1.11169 1.03139 1.72678 1.16712 0.95412 0.81307 1.00512 1.21332 0.95374 0.99096 1.00059 1.21082 1.00716 0.90209 0.99209 1.20500 0.91490 1.00760 0.98578 1.18953 0.96462 0.87642 1.02716 1.70677 1.02278 1.32025 1.20331 1.20355 0.88003 0.79093 0.96322 1.84806 1.29940 1.81412 1.28489 1.43208 1.17792 1.09336 1.50930 0.72182 1.18208 0.89208 0.96086 1.04996 0.91984 0.86591 0.86598 0.73918 0.84605 0.82329 0.83150 0.70150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.41 13.22 21.65 0.29 -54.12 16 2 C 0.01 0.79 5.49 84.86 0.47 1.26 16 3 Si 1.00 42.27 29.55 68.60 2.03 44.29 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.55 -29.89 9.50 67.95 0.65 -29.25 16 8 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 9 S -0.14 -7.42 20.57 -56.49 -1.16 -8.58 16 10 C -0.13 -4.67 6.16 71.23 0.44 -4.23 16 11 C 0.54 18.10 7.65 87.65 0.67 18.77 16 12 O -0.53 -22.23 13.03 -3.07 -0.04 -22.27 16 13 N -0.66 -15.94 5.37 -303.38 -1.63 -17.57 16 14 C 0.16 4.11 6.44 38.15 0.25 4.35 16 15 C -0.14 -3.82 8.72 22.44 0.20 -3.63 16 16 C -0.09 -2.06 10.01 22.23 0.22 -1.84 16 17 C -0.09 -2.07 10.10 22.52 0.23 -1.84 16 18 C 0.06 1.52 7.22 39.39 0.28 1.80 16 19 N -0.52 -12.71 11.31 -306.52 -3.47 -16.18 16 20 C 0.47 8.52 9.39 179.77 1.69 10.20 16 21 O -0.44 -4.98 13.63 -85.73 -1.17 -6.15 16 22 N -0.59 -9.57 6.27 -302.16 -1.89 -11.46 16 23 H 0.44 4.12 8.96 -92.71 -0.83 3.29 16 24 C 0.03 0.59 7.19 38.82 0.28 0.87 16 25 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 26 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16 27 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 28 H 0.42 6.84 8.79 -92.71 -0.81 6.02 16 29 H 0.14 4.47 5.78 -2.91 -0.02 4.46 16 30 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 31 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.44 0.08 9.06 -74.06 -0.67 -0.59 16 Total: -1.00 -79.24 303.24 -2.77 -82.01 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -1.09 Total: 13.56 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 5.36 Total: -3.53 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -6.70 Total: -99.34 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -1.21 Total: -28.41 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: -7.42 SS G_CDS: -1.16 Total: -8.58 kcal Total: -79.24 -2.77 -82.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571448373.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.829 kcal (2) G-P(sol) polarization free energy of solvation -79.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds