Wall clock time and date at job start Tue Mar 31 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86795 * 120.00322 * 2 1 4 4 H 1.48504 * 109.47352 * 265.00089 * 3 2 1 5 5 H 1.48497 * 109.46967 * 24.99967 * 3 2 1 6 6 H 1.48500 * 109.47054 * 144.99815 * 3 2 1 7 7 C 1.39952 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00320 * 146.28954 * 7 2 1 9 9 C 1.41070 * 120.00096 * 326.29223 * 7 2 1 10 10 C 1.40749 * 120.28985 * 341.60830 * 9 7 2 11 11 C 1.37550 * 119.80785 * 179.97438 * 10 9 7 12 12 Cl 1.73599 * 119.78636 * 179.97438 * 11 10 9 13 13 C 1.38999 * 120.42113 * 0.02562 * 11 10 9 14 14 C 1.38186 * 120.60642 * 359.95463 * 13 11 10 15 15 C 1.38617 * 120.17203 * 0.04522 * 14 13 11 16 16 N 1.39150 * 120.21190 * 180.25322 * 15 14 13 17 17 C 1.34776 * 119.99913 * 20.75617 * 16 15 14 18 18 O 1.21283 * 120.00237 * 6.59494 * 17 16 15 19 19 C 1.50699 * 119.99956 * 186.59694 * 17 16 15 20 20 C 1.53838 * 113.65660 * 278.99972 * 19 17 16 21 21 C 1.51778 * 86.68903 * 220.76043 * 20 19 17 22 22 O 1.20755 * 135.74977 * 205.15435 * 21 20 19 23 23 C 1.51580 * 88.46550 * 25.07823 * 21 20 19 24 24 H 0.96998 * 119.99542 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.09347 * 359.95048 * 10 9 7 26 26 H 1.08001 * 119.69567 * 180.02562 * 13 11 10 27 27 H 1.07997 * 119.91614 * 180.02562 * 14 13 11 28 28 H 0.97000 * 119.99852 * 200.75769 * 16 15 14 29 29 H 1.09002 * 112.88587 * 50.33316 * 19 17 16 30 30 H 1.09003 * 113.66817 * 335.19275 * 20 19 17 31 31 H 1.08999 * 113.66911 * 106.26627 * 20 19 17 32 32 H 1.09002 * 113.66308 * 220.45670 * 23 21 20 33 33 H 1.09001 * 113.66657 * 89.38980 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 2.5958 1.9854 -1.3948 5 1 1.3913 2.6808 0.5917 6 1 3.4833 1.4728 0.8031 7 6 2.0083 -1.2120 -0.0005 8 1 2.9520 -1.2905 -0.5196 9 6 1.4808 -2.3313 0.6769 10 6 0.4848 -2.1634 1.6572 11 6 -0.0229 -3.2617 2.3113 12 17 -1.2508 -3.0539 3.5207 13 6 0.4417 -4.5369 2.0108 14 6 1.4187 -4.7217 1.0512 15 6 1.9478 -3.6323 0.3768 16 7 2.9279 -3.8180 -0.5933 17 6 3.0748 -5.0219 -1.1811 18 8 2.2793 -5.9088 -0.9539 19 6 4.2275 -5.2661 -2.1206 20 6 3.9879 -4.7325 -3.5434 21 6 4.6428 -6.0094 -4.0378 22 8 5.2358 -6.3478 -5.0338 23 6 4.2319 -6.6746 -2.7392 24 1 -0.4849 0.8401 0.0004 25 1 0.1207 -1.1750 1.8953 26 1 0.0345 -5.3911 2.5313 27 1 1.7712 -5.7174 0.8263 28 1 3.5054 -3.0809 -0.8466 29 1 5.1881 -4.9708 -1.6986 30 1 2.9337 -4.6506 -3.8083 31 1 4.5554 -3.8309 -3.7740 32 1 4.9954 -7.3325 -2.3240 33 1 3.2463 -7.1386 -2.7781 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583093308.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:57 Heat of formation + Delta-G solvation = -50.411553 kcal Electronic energy + Delta-G solvation = -20365.519265 eV Core-core repulsion = 16996.075698 eV Total energy + Delta-G solvation = -3369.443567 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78800 -40.46377 -39.06391 -37.26670 -36.84104 -35.62739 -35.25570 -31.72639 -30.26566 -27.46683 -27.07794 -26.19768 -23.59438 -22.44662 -21.03883 -19.97052 -19.36308 -18.69566 -17.91019 -17.13904 -16.89204 -16.45264 -16.36923 -16.11888 -15.70519 -15.23180 -14.72998 -14.52000 -14.39798 -14.00366 -13.64622 -13.59769 -13.31777 -13.25955 -12.79754 -12.60435 -12.38323 -12.31573 -12.23091 -12.04259 -11.87166 -11.43010 -10.96461 -10.85635 -10.51260 -10.36734 -9.56924 -8.89471 -8.61047 -6.26465 0.67818 0.79907 0.95162 1.42262 1.51267 1.55614 1.61265 1.78241 2.17494 2.38742 2.60808 2.83973 3.32130 3.59516 3.71735 3.89887 4.12840 4.24357 4.52606 4.59774 4.61712 4.73928 4.87796 4.95216 5.05697 5.08386 5.20536 5.29013 5.50469 5.72187 5.92407 5.97684 6.13858 6.41040 6.46412 6.65676 6.84594 6.94433 7.40679 8.15122 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.005182 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.541477 B = 5401.973286 C = 7280.210363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.053 3.947 3 Si 0.970 3.030 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.482 4.482 8 H 0.102 0.898 9 C 0.089 3.911 10 C -0.194 4.194 11 C -0.012 4.012 12 Cl -0.108 7.108 13 C -0.241 4.241 14 C -0.093 4.093 15 C 0.011 3.989 16 N -0.629 5.629 17 C 0.511 3.489 18 O -0.568 6.568 19 C -0.115 4.115 20 C -0.170 4.170 21 C 0.372 3.628 22 O -0.461 6.461 23 C -0.164 4.164 24 H 0.295 0.705 25 H 0.106 0.894 26 H 0.114 0.886 27 H 0.134 0.866 28 H 0.417 0.583 29 H 0.155 0.845 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.191 -2.055 -3.063 8.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.169 4.169 3 Si 0.790 3.210 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.177 1.177 7 C -0.509 4.509 8 H 0.120 0.880 9 C 0.085 3.915 10 C -0.215 4.215 11 C -0.039 4.039 12 Cl -0.080 7.080 13 C -0.261 4.261 14 C -0.114 4.114 15 C -0.084 4.084 16 N -0.271 5.271 17 C 0.300 3.700 18 O -0.448 6.448 19 C -0.136 4.136 20 C -0.208 4.208 21 C 0.248 3.752 22 O -0.335 6.335 23 C -0.202 4.202 24 H 0.106 0.894 25 H 0.124 0.876 26 H 0.132 0.868 27 H 0.152 0.848 28 H 0.254 0.746 29 H 0.172 0.828 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.134 0.866 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.666 -2.709 -3.378 8.804 hybrid contribution -0.273 1.144 0.359 1.230 sum 7.393 -1.565 -3.019 8.137 Atomic orbital electron populations 1.69964 1.09843 1.31776 1.29649 1.26772 0.94832 1.04779 0.90472 0.85393 0.79598 0.75907 0.80097 1.17938 1.20027 1.17684 1.19558 1.06745 0.94371 1.30214 0.88023 1.17430 0.90977 0.91322 0.91788 1.20757 1.03910 0.96402 1.00441 1.20821 0.93616 0.95474 0.93967 1.98245 1.55418 1.97866 1.56441 1.20303 1.05387 0.94368 1.06068 1.20989 0.97027 0.98569 0.94773 1.17746 1.00256 0.93244 0.97195 1.42925 1.33762 1.13292 1.37163 1.20810 0.86667 0.81679 0.80871 1.90593 1.45448 1.45118 1.63630 1.22415 0.98525 0.99016 0.93668 1.24053 1.04365 1.00291 0.92118 1.25773 0.73010 0.92069 0.84325 1.90418 1.35216 1.78178 1.29674 1.23937 1.05484 0.97287 0.93461 0.89441 0.87578 0.86822 0.84815 0.74551 0.82753 0.86225 0.85608 0.86588 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.14 11.64 21.83 0.25 -36.88 16 2 C 0.05 2.30 4.78 85.25 0.41 2.71 16 3 Si 0.97 32.43 29.67 68.60 2.04 34.46 16 4 H -0.26 -8.04 7.11 99.48 0.71 -7.33 16 5 H -0.28 -9.23 7.11 99.48 0.71 -8.52 16 6 H -0.25 -8.29 7.11 99.48 0.71 -7.58 16 7 C -0.48 -21.43 8.61 23.38 0.20 -21.23 16 8 H 0.10 3.94 6.57 -2.91 -0.02 3.92 16 9 C 0.09 4.25 5.62 -21.18 -0.12 4.13 16 10 C -0.19 -9.61 8.58 22.72 0.19 -9.42 16 11 C -0.01 -0.56 6.31 22.29 0.14 -0.42 16 12 Cl -0.11 -4.38 28.94 -2.72 -0.08 -4.46 16 13 C -0.24 -10.82 9.82 22.44 0.22 -10.60 16 14 C -0.09 -4.15 8.74 22.35 0.20 -3.96 16 15 C 0.01 0.46 6.51 38.86 0.25 0.71 16 16 N -0.63 -21.37 5.19 -302.30 -1.57 -22.94 16 17 C 0.51 15.54 7.18 87.66 0.63 16.17 16 18 O -0.57 -21.58 12.89 -3.04 -0.04 -21.62 16 19 C -0.12 -2.18 4.17 -11.03 -0.05 -2.22 16 20 C -0.17 -2.93 7.62 30.47 0.23 -2.69 16 21 C 0.37 7.45 9.14 29.67 0.27 7.72 16 22 O -0.46 -12.37 17.99 -1.44 -0.03 -12.40 16 23 C -0.16 -3.02 7.37 30.41 0.22 -2.80 16 24 H 0.29 12.54 8.30 -92.71 -0.77 11.77 16 25 H 0.11 5.47 6.33 -2.91 -0.02 5.46 16 26 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 27 H 0.13 5.84 5.53 -2.91 -0.02 5.82 16 28 H 0.42 11.89 7.04 -92.71 -0.65 11.24 16 29 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.12 2.26 8.09 -2.39 -0.02 2.24 16 31 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.12 2.61 7.44 -2.39 -0.02 2.59 16 Total: -1.00 -60.14 303.87 3.91 -56.23 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.53 Total: 29.50 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 2.80 Total: -21.89 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -1.32 Total: -59.82 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.07 Total: -34.02 kcal Atomic # 14 Polarization: 32.43 SS G_CDS: 2.04 Total: 34.46 kcal Atomic # 17 Polarization: -4.38 SS G_CDS: -0.08 Total: -4.46 kcal Total: -60.14 3.91 -56.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583093308.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.820 kcal (2) G-P(sol) polarization free energy of solvation -60.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds