Wall clock time and date at job start Tue Mar 31 2020 06:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46493 * 109.47115 * 2 1 4 4 C 1.36890 * 120.00135 * 261.80838 * 3 2 1 5 5 H 1.07996 * 120.00161 * 191.21929 * 4 3 2 6 6 C 1.39004 * 119.99783 * 11.21363 * 4 3 2 7 7 N 1.31408 * 119.99841 * 26.10037 * 6 4 3 8 8 Si 1.86800 * 120.00290 * 206.09884 * 6 4 3 9 9 H 1.48495 * 109.47250 * 90.00078 * 8 6 4 10 10 H 1.48498 * 109.47162 * 210.00254 * 8 6 4 11 11 H 1.48503 * 109.46908 * 330.00101 * 8 6 4 12 12 C 1.34777 * 120.00210 * 81.80240 * 3 2 1 13 13 O 1.21747 * 120.00181 * 182.21225 * 12 3 2 14 14 C 1.46452 * 119.99764 * 2.22397 * 12 3 2 15 15 C 1.36770 * 125.46344 * 171.99944 * 14 12 3 16 16 C 1.37442 * 113.28237 * 180.25868 * 15 14 12 17 17 C 1.33846 * 115.10663 * 0.02562 * 16 15 14 18 18 C 1.50698 * 124.51560 * 179.97438 * 17 16 15 19 19 F 1.39911 * 109.46991 * 89.99729 * 18 17 16 20 20 F 1.39898 * 109.47329 * 209.99552 * 18 17 16 21 21 F 1.39902 * 109.47301 * 329.99988 * 18 17 16 22 22 S 1.70613 * 110.96949 * 359.97438 * 17 16 15 23 23 H 1.08993 * 109.47063 * 299.99985 * 1 2 3 24 24 H 1.09003 * 109.46656 * 60.00182 * 1 2 3 25 25 H 1.09000 * 109.46879 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47288 * 239.99734 * 2 1 3 27 27 H 1.09003 * 109.46656 * 119.99818 * 2 1 3 28 28 H 0.97003 * 119.99606 * 180.02562 * 7 6 4 29 29 H 1.08006 * 123.35806 * 0.24136 * 15 14 12 30 30 H 1.08001 * 122.44975 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4058 1.9702 -1.1734 5 1 2.9317 2.9133 -1.1563 6 6 2.1225 1.3543 -2.3869 7 7 1.0976 0.5378 -2.4858 8 14 3.1985 1.6872 -3.8771 9 1 4.3067 0.6995 -3.9181 10 1 2.3835 1.5683 -5.1127 11 1 3.7609 3.0585 -3.7851 12 6 2.0862 2.0720 1.1553 13 8 2.4537 3.2327 1.1498 14 6 1.7178 1.4264 2.4171 15 6 1.8892 1.9639 3.6631 16 6 1.4599 1.1384 4.6746 17 6 0.9549 -0.0348 4.2745 18 6 0.4245 -1.0972 5.2024 19 9 -0.9411 -0.8855 5.4215 20 9 0.6142 -2.3574 4.6254 21 9 1.1076 -1.0348 6.4217 22 16 0.9916 -0.1672 2.5739 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8935 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.9001 0.1077 -3.3325 29 1 2.3192 2.9397 3.8349 30 1 1.5261 1.4156 5.7163 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586752833.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:32 Heat of formation + Delta-G solvation = -133.204795 kcal Electronic energy + Delta-G solvation = -21512.046676 eV Core-core repulsion = 17599.199890 eV Total energy + Delta-G solvation = -3912.846785 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.044 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.04204 -47.57967 -47.52188 -38.97777 -37.37124 -35.23950 -32.37320 -30.56646 -29.78143 -26.80267 -24.89312 -23.24539 -22.61690 -20.94216 -19.34808 -18.55167 -18.40323 -17.41687 -17.07736 -16.73419 -15.36035 -14.97818 -14.50891 -14.39817 -14.26429 -14.20738 -13.98817 -13.80074 -13.70977 -13.70171 -13.40378 -12.77012 -12.63826 -12.17077 -11.99226 -11.84494 -11.63911 -11.26521 -11.13707 -10.59847 -10.51557 -10.48891 -10.09000 -9.28166 -8.76344 -8.60843 -8.23060 -7.88411 -6.75012 -4.04830 0.66712 1.71510 2.17936 2.63340 2.83456 3.02559 3.10175 3.14479 3.84843 3.91077 3.99983 4.32473 4.49483 4.50706 4.80475 5.31983 5.51230 5.68423 5.71057 6.15724 6.17970 6.19141 6.38333 6.53041 6.62182 6.85110 7.13316 7.43689 7.75528 8.14920 8.83718 9.01726 9.65500 10.24513 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.031678 B = 0.004871 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.671420 B = 5746.573643 C = 6302.498187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.104 3.896 3 N -0.414 5.414 4 C -0.295 4.295 5 H 0.115 0.885 6 C 0.034 3.966 7 N -0.845 5.845 8 Si 0.928 3.072 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.265 1.265 12 C 0.482 3.518 13 O -0.581 6.581 14 C -0.183 4.183 15 C -0.120 4.120 16 C -0.067 4.067 17 C -0.411 4.411 18 C 0.545 3.455 19 F -0.178 7.178 20 F -0.178 7.178 21 F -0.178 7.178 22 S 0.301 5.699 23 H 0.038 0.962 24 H 0.103 0.897 25 H 0.053 0.947 26 H 0.115 0.885 27 H 0.045 0.955 28 H 0.276 0.724 29 H 0.153 0.847 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.808 -6.159 8.283 10.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.022 4.022 3 N -0.129 5.129 4 C -0.424 4.424 5 H 0.132 0.868 6 C -0.173 4.173 7 N -0.482 5.482 8 Si 0.754 3.246 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.189 1.189 12 C 0.272 3.728 13 O -0.468 6.468 14 C -0.305 4.305 15 C -0.151 4.151 16 C -0.101 4.101 17 C -0.530 4.530 18 C 0.490 3.510 19 F -0.159 7.159 20 F -0.160 7.160 21 F -0.159 7.159 22 S 0.573 5.427 23 H 0.057 0.943 24 H 0.122 0.878 25 H 0.072 0.928 26 H 0.133 0.867 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.171 0.829 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.209 -6.902 7.156 10.185 hybrid contribution 0.660 0.848 0.701 1.283 sum -1.549 -6.054 7.857 10.039 Atomic orbital electron populations 1.22339 0.95278 1.01462 1.03089 1.21818 0.95698 0.83998 1.00668 1.43883 1.52078 1.10574 1.06357 1.19939 1.33000 1.07812 0.81664 0.86786 1.25418 0.95754 0.96670 0.99463 1.70055 1.21953 1.28749 1.27417 0.85874 0.79792 0.79658 0.79296 1.19901 1.20657 1.18924 1.16580 0.87722 0.86509 0.81952 1.90678 1.54410 1.16100 1.85576 1.25465 1.07235 0.98410 0.99432 1.20446 1.03500 1.01686 0.89513 1.19681 0.97658 0.91775 1.00979 1.25078 1.19989 1.02031 1.05879 1.17298 0.75265 0.79959 0.78497 1.93210 1.32841 1.94782 1.95062 1.93187 1.94986 1.43435 1.84359 1.93168 1.79854 1.96365 1.46540 1.84355 1.54147 1.13522 0.90707 0.94299 0.87805 0.92830 0.86667 0.93857 0.91318 0.82931 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 8.44 37.16 0.31 -2.79 16 2 C 0.10 2.14 4.84 -4.04 -0.02 2.12 16 3 N -0.41 -9.95 2.64 -116.37 -0.31 -10.26 16 4 C -0.30 -7.53 9.38 -15.01 -0.14 -7.67 16 5 H 0.11 3.08 7.35 -52.49 -0.39 2.69 16 6 C 0.03 0.79 4.82 -17.45 -0.08 0.70 16 7 N -0.84 -19.37 8.81 55.50 0.49 -18.88 16 8 Si 0.93 18.48 29.63 -169.99 -5.04 13.44 16 9 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 10 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 11 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 12 C 0.48 11.72 7.51 -12.95 -0.10 11.62 16 13 O -0.58 -15.96 16.46 5.15 0.08 -15.88 16 14 C -0.18 -3.66 6.09 -36.81 -0.22 -3.89 16 15 C -0.12 -2.14 10.02 -40.40 -0.41 -2.54 16 16 C -0.07 -1.04 9.63 -41.41 -0.40 -1.44 16 17 C -0.41 -6.51 5.75 -35.85 -0.21 -6.72 16 18 C 0.55 7.96 3.50 36.00 0.13 8.08 16 19 F -0.18 -2.59 17.30 2.25 0.04 -2.56 16 20 F -0.18 -2.57 16.97 2.25 0.04 -2.54 16 21 F -0.18 -2.49 16.88 2.25 0.04 -2.46 16 22 S 0.30 5.05 14.87 -107.50 -1.60 3.45 16 23 H 0.04 0.72 5.91 -42.31 -0.25 0.47 16 24 H 0.10 2.25 6.30 -51.93 -0.33 1.93 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.12 2.47 5.95 -51.93 -0.31 2.16 16 27 H 0.04 0.82 4.50 -22.32 -0.10 0.72 16 28 H 0.28 5.93 8.31 -40.82 -0.34 5.59 16 29 H 0.15 2.61 8.06 -52.48 -0.42 2.19 16 30 H 0.14 1.78 7.96 -52.49 -0.42 1.36 16 LS Contribution 277.35 15.07 4.18 4.18 Total: -1.00 -26.55 277.35 -4.98 -31.53 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -1.77 Total: 2.48 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.14 Total: -2.52 kcal Atomic # 7 Polarization: -29.32 SS G_CDS: 0.18 Total: -29.14 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.08 Total: -15.88 kcal Atomic # 9 Polarization: -7.66 SS G_CDS: 0.12 Total: -7.55 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.04 Total: 13.44 kcal Atomic # 16 Polarization: 5.05 SS G_CDS: -1.60 Total: 3.45 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -26.55 -4.98 -31.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586752833.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.671 kcal (2) G-P(sol) polarization free energy of solvation -26.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds