Wall clock time and date at job start Tue Mar 31 2020 06:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46493 * 109.47115 * 2 1 4 4 C 1.36890 * 120.00135 * 261.80838 * 3 2 1 5 5 H 1.07996 * 120.00161 * 191.21929 * 4 3 2 6 6 C 1.39004 * 119.99783 * 11.21363 * 4 3 2 7 7 N 1.31408 * 119.99841 * 26.10037 * 6 4 3 8 8 Si 1.86800 * 120.00290 * 206.09884 * 6 4 3 9 9 H 1.48495 * 109.47250 * 90.00078 * 8 6 4 10 10 H 1.48498 * 109.47162 * 210.00254 * 8 6 4 11 11 H 1.48503 * 109.46908 * 330.00101 * 8 6 4 12 12 C 1.34777 * 120.00210 * 81.80240 * 3 2 1 13 13 O 1.21747 * 120.00181 * 182.21225 * 12 3 2 14 14 C 1.46452 * 119.99764 * 2.22397 * 12 3 2 15 15 C 1.36770 * 125.46344 * 171.99944 * 14 12 3 16 16 C 1.37442 * 113.28237 * 180.25868 * 15 14 12 17 17 C 1.33846 * 115.10663 * 0.02562 * 16 15 14 18 18 C 1.50698 * 124.51560 * 179.97438 * 17 16 15 19 19 F 1.39911 * 109.46991 * 89.99729 * 18 17 16 20 20 F 1.39898 * 109.47329 * 209.99552 * 18 17 16 21 21 F 1.39902 * 109.47301 * 329.99988 * 18 17 16 22 22 S 1.70613 * 110.96949 * 359.97438 * 17 16 15 23 23 H 1.08993 * 109.47063 * 299.99985 * 1 2 3 24 24 H 1.09003 * 109.46656 * 60.00182 * 1 2 3 25 25 H 1.09000 * 109.46879 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47288 * 239.99734 * 2 1 3 27 27 H 1.09003 * 109.46656 * 119.99818 * 2 1 3 28 28 H 0.97003 * 119.99606 * 180.02562 * 7 6 4 29 29 H 1.08006 * 123.35806 * 0.24136 * 15 14 12 30 30 H 1.08001 * 122.44975 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4058 1.9702 -1.1734 5 1 2.9317 2.9133 -1.1563 6 6 2.1225 1.3543 -2.3869 7 7 1.0976 0.5378 -2.4858 8 14 3.1985 1.6872 -3.8771 9 1 4.3067 0.6995 -3.9181 10 1 2.3835 1.5683 -5.1127 11 1 3.7609 3.0585 -3.7851 12 6 2.0862 2.0720 1.1553 13 8 2.4537 3.2327 1.1498 14 6 1.7178 1.4264 2.4171 15 6 1.8892 1.9639 3.6631 16 6 1.4599 1.1384 4.6746 17 6 0.9549 -0.0348 4.2745 18 6 0.4245 -1.0972 5.2024 19 9 -0.9411 -0.8855 5.4215 20 9 0.6142 -2.3574 4.6254 21 9 1.1076 -1.0348 6.4217 22 16 0.9916 -0.1672 2.5739 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8935 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.9001 0.1077 -3.3325 29 1 2.3192 2.9397 3.8349 30 1 1.5261 1.4156 5.7163 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586752833.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:32 Heat of formation + Delta-G solvation = -147.540857 kcal Electronic energy + Delta-G solvation = -21512.668334 eV Core-core repulsion = 17599.199890 eV Total energy + Delta-G solvation = -3913.468444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.044 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.20358 -48.73133 -48.67973 -40.72446 -38.81595 -37.06667 -34.14814 -32.07200 -31.38487 -28.34306 -26.50012 -24.63870 -24.21107 -22.48740 -20.68905 -19.87491 -19.56271 -19.07543 -18.70028 -18.24001 -16.81955 -16.68740 -16.03916 -15.88212 -15.60175 -15.57483 -15.27586 -15.13628 -15.06444 -14.85950 -14.84923 -14.26216 -14.15338 -13.81960 -13.45283 -13.28293 -13.19678 -12.84701 -12.80724 -12.22782 -12.17214 -12.06656 -11.57144 -11.04043 -10.65147 -10.13527 -9.92682 -9.33372 -8.51429 -5.95366 -0.74886 0.28105 0.77866 1.19821 1.43750 1.46363 1.55560 1.61680 2.20411 2.25517 2.66140 2.81696 2.98644 3.14355 3.31445 3.73021 4.07302 4.21125 4.37549 4.55515 4.61910 4.80961 4.94044 5.08355 5.21227 5.24344 5.33848 5.77490 5.92475 6.35239 7.00651 7.22422 7.83623 8.47476 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.031678 B = 0.004871 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.671420 B = 5746.573643 C = 6302.498187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.105 3.895 3 N -0.425 5.425 4 C -0.348 4.348 5 H 0.081 0.919 6 C 0.014 3.986 7 N -0.851 5.851 8 Si 0.988 3.012 9 H -0.264 1.264 10 H -0.269 1.269 11 H -0.278 1.278 12 C 0.472 3.528 13 O -0.630 6.630 14 C -0.228 4.228 15 C -0.102 4.102 16 C -0.063 4.063 17 C -0.399 4.399 18 C 0.553 3.447 19 F -0.174 7.174 20 F -0.175 7.175 21 F -0.170 7.170 22 S 0.337 5.663 23 H 0.041 0.959 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.284 0.716 29 H 0.155 0.845 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 -8.063 9.652 12.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.020 4.020 3 N -0.140 5.140 4 C -0.476 4.476 5 H 0.099 0.901 6 C -0.192 4.192 7 N -0.487 5.487 8 Si 0.811 3.189 9 H -0.189 1.189 10 H -0.194 1.194 11 H -0.202 1.202 12 C 0.263 3.737 13 O -0.521 6.521 14 C -0.350 4.350 15 C -0.135 4.135 16 C -0.097 4.097 17 C -0.517 4.517 18 C 0.497 3.503 19 F -0.156 7.156 20 F -0.156 7.156 21 F -0.151 7.151 22 S 0.610 5.390 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.104 0.896 26 H 0.122 0.878 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.172 0.828 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.866 -8.864 8.503 12.613 hybrid contribution 0.784 1.387 0.496 1.669 sum -2.081 -7.477 8.998 11.883 Atomic orbital electron populations 1.22243 0.94142 1.03073 1.01841 1.21918 0.96558 0.82381 1.01174 1.44018 1.52263 1.11719 1.05953 1.19731 1.36076 1.08395 0.83392 0.90080 1.26019 0.96181 0.96188 1.00853 1.70097 1.21724 1.28498 1.28340 0.85017 0.78444 0.78863 0.76563 1.18936 1.19416 1.20249 1.17163 0.86987 0.86248 0.83329 1.90611 1.56401 1.18319 1.86775 1.25149 1.10441 1.01098 0.98270 1.20695 1.01662 1.01843 0.89323 1.19881 0.96775 0.90980 1.02048 1.25342 1.18265 1.02462 1.05680 1.17048 0.75315 0.79545 0.78417 1.93228 1.32563 1.94757 1.95011 1.93205 1.94972 1.43107 1.84353 1.93194 1.79710 1.96305 1.45920 1.84025 1.52959 1.10726 0.91313 0.94052 0.90542 0.89629 0.87795 0.91840 0.90548 0.82778 0.81060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.76 8.44 71.99 0.61 -5.15 16 2 C 0.10 4.29 4.84 86.38 0.42 4.71 16 3 N -0.42 -21.22 2.64 -640.28 -1.69 -22.91 16 4 C -0.35 -18.69 9.38 84.09 0.79 -17.90 16 5 H 0.08 4.76 7.35 -2.91 -0.02 4.74 16 6 C 0.01 0.67 4.82 84.94 0.41 1.08 16 7 N -0.85 -39.23 8.81 21.67 0.19 -39.04 16 8 Si 0.99 38.49 29.63 68.60 2.03 40.52 16 9 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 10 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 11 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 12 C 0.47 23.80 7.51 86.38 0.65 24.45 16 13 O -0.63 -36.66 16.46 -4.50 -0.07 -36.73 16 14 C -0.23 -9.04 6.09 24.07 0.15 -8.90 16 15 C -0.10 -3.49 10.02 21.74 0.22 -3.27 16 16 C -0.06 -1.75 9.63 21.08 0.20 -1.55 16 17 C -0.40 -11.20 5.75 24.69 0.14 -11.06 16 18 C 0.55 13.92 3.50 71.24 0.25 14.17 16 19 F -0.17 -4.42 17.30 44.97 0.78 -3.64 16 20 F -0.18 -4.39 16.97 44.97 0.76 -3.63 16 21 F -0.17 -4.05 16.88 44.97 0.76 -3.29 16 22 S 0.34 10.54 14.87 -56.49 -0.84 9.70 16 23 H 0.04 1.50 5.91 -8.51 -0.05 1.45 16 24 H 0.08 3.33 6.30 -2.39 -0.02 3.31 16 25 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.10 4.48 5.95 -2.39 -0.01 4.46 16 27 H 0.06 2.31 4.50 -21.21 -0.10 2.22 16 28 H 0.28 12.03 8.31 -92.71 -0.77 11.26 16 29 H 0.15 5.17 8.06 -2.91 -0.02 5.15 16 30 H 0.17 3.61 7.96 -2.91 -0.02 3.59 16 Total: -1.00 -59.51 277.35 6.84 -52.67 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.09 Total: 9.77 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 3.83 Total: -3.42 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -1.50 Total: -61.95 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.07 Total: -36.73 kcal Atomic # 9 Polarization: -12.86 SS G_CDS: 2.30 Total: -10.56 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Atomic # 16 Polarization: 10.54 SS G_CDS: -0.84 Total: 9.70 kcal Total: -59.51 6.84 -52.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586752833.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.869 kcal (2) G-P(sol) polarization free energy of solvation -59.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds