Wall clock time and date at job start Tue Mar 31 2020 06:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47472 * 2 1 4 4 C 1.50697 * 109.46843 * 239.99853 * 2 1 3 5 5 H 1.08001 * 120.00046 * 275.00122 * 4 2 1 6 6 C 1.37881 * 120.00166 * 95.01031 * 4 2 1 7 7 N 1.31507 * 120.00265 * 184.91565 * 6 4 2 8 8 Si 1.86797 * 119.99764 * 4.90744 * 6 4 2 9 9 H 1.48503 * 109.47214 * 84.83708 * 8 6 4 10 10 H 1.48502 * 109.47442 * 204.83829 * 8 6 4 11 11 H 1.48499 * 109.47323 * 324.83923 * 8 6 4 12 12 N 1.46498 * 109.46941 * 120.00149 * 2 1 3 13 13 C 1.34772 * 120.00003 * 274.99838 * 12 2 1 14 14 O 1.21703 * 120.00017 * 359.97438 * 13 12 2 15 15 C 1.46586 * 120.00162 * 180.02562 * 13 12 2 16 16 C 1.36648 * 125.45709 * 180.02562 * 15 13 12 17 17 C 1.37475 * 113.29305 * 179.97438 * 16 15 13 18 18 C 1.33812 * 115.10405 * 359.97438 * 17 16 15 19 19 C 1.50700 * 124.52164 * 180.02562 * 18 17 16 20 20 F 1.39904 * 109.46943 * 89.99703 * 19 18 17 21 21 F 1.39889 * 109.47334 * 329.99802 * 19 18 17 22 22 F 1.39905 * 109.47010 * 209.99621 * 19 18 17 23 23 S 1.70620 * 110.95407 * 0.26275 * 18 17 16 24 24 H 1.09000 * 109.47137 * 295.04044 * 1 2 3 25 25 H 1.09000 * 109.46806 * 55.03404 * 1 2 3 26 26 H 1.08996 * 109.47676 * 175.03528 * 1 2 3 27 27 H 0.97000 * 120.00118 * 179.97438 * 7 6 4 28 28 H 0.96999 * 119.99896 * 94.99933 * 12 2 1 29 29 H 1.07997 * 123.35368 * 359.97438 * 16 15 13 30 30 H 1.08001 * 122.44695 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.1353 -1.7855 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3137 1.8790 -2.3174 9 1 3.5993 2.3947 -1.7821 10 1 2.1060 2.3991 -3.6928 11 1 1.1988 2.3275 -1.4450 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8580 1.1626 2.4116 15 6 2.6361 -0.7092 3.5538 16 6 2.8084 -0.1389 4.7836 17 6 3.2803 -1.0181 5.7293 18 6 3.4873 -2.2655 5.2915 19 6 3.9996 -3.3964 6.1458 20 9 2.9190 -4.0647 6.7316 21 9 4.8301 -2.8844 7.1483 22 9 4.7249 -4.2901 5.3505 23 16 3.1001 -2.4032 3.6356 24 1 -0.3633 0.4350 0.9311 25 1 -0.3633 0.5890 -0.8422 26 1 -0.3634 -1.0237 -0.0889 27 1 2.9364 -0.1049 -4.2555 28 1 2.2489 -1.6318 1.1526 29 1 2.5952 0.8991 4.9918 30 1 3.4693 -0.7237 6.7510 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586759642.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:18 Heat of formation + Delta-G solvation = -158.517514 kcal Electronic energy + Delta-G solvation = -20584.332972 eV Core-core repulsion = 16670.388545 eV Total energy + Delta-G solvation = -3913.944427 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.044 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.43796 -47.96481 -47.91427 -39.45430 -37.84753 -35.04448 -32.54214 -31.38063 -29.83636 -26.73189 -25.40121 -23.90849 -22.17732 -20.09005 -20.02427 -19.33920 -18.79358 -18.41393 -17.19251 -16.51428 -16.03377 -15.39001 -14.89205 -14.78201 -14.64278 -14.50435 -14.35260 -14.09191 -14.07078 -13.82720 -13.31781 -13.07897 -12.72073 -12.60624 -12.53678 -12.39474 -11.60994 -11.24994 -11.19438 -10.90469 -10.68987 -9.96942 -9.61994 -9.34697 -9.28809 -8.89382 -8.79582 -8.31721 -6.31412 -4.36592 0.05362 0.96611 1.46870 2.05397 2.35894 3.20197 3.29056 3.35132 3.38506 3.45107 3.65146 3.87670 4.05629 4.25221 4.88425 4.96980 5.07460 5.17239 5.53626 5.80405 5.97107 6.23193 6.40670 6.56217 6.79566 7.03484 7.21613 7.37750 7.94369 8.36785 8.60172 8.70570 9.29120 10.79960 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.029680 B = 0.003883 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.174882 B = 7208.342458 C = 7599.729469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.230 3.770 3 H 0.054 0.946 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.084 3.916 7 N -0.885 5.885 8 Si 0.873 3.127 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.260 1.260 12 N -0.693 5.693 13 C 0.569 3.431 14 O -0.537 6.537 15 C -0.214 4.214 16 C -0.084 4.084 17 C -0.071 4.071 18 C -0.346 4.346 19 C 0.545 3.455 20 F -0.171 7.171 21 F -0.170 7.170 22 F -0.172 7.172 23 S 0.292 5.708 24 H 0.030 0.970 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.269 0.731 28 H 0.391 0.609 29 H 0.164 0.836 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.726 -4.763 18.433 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.129 3.871 3 H 0.072 0.928 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.121 4.121 7 N -0.520 5.520 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.184 1.184 12 N -0.341 5.341 13 C 0.352 3.648 14 O -0.416 6.416 15 C -0.337 4.337 16 C -0.115 4.115 17 C -0.106 4.106 18 C -0.466 4.466 19 C 0.489 3.511 20 F -0.152 7.152 21 F -0.151 7.151 22 F -0.153 7.153 23 S 0.562 5.438 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.225 0.775 29 H 0.182 0.818 30 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.624 -5.163 17.149 17.983 hybrid contribution 0.272 1.431 1.174 1.871 sum 1.897 -3.732 18.323 18.795 Atomic orbital electron populations 1.22228 0.98134 1.00867 0.99514 1.19251 0.91232 0.94422 0.82219 0.92803 1.20970 1.45762 0.95695 0.94820 0.90169 1.24929 0.93409 0.98713 0.95097 1.69869 1.44143 1.36329 1.01692 0.86906 0.79879 0.85685 0.77561 1.19731 1.21018 1.18404 1.46716 1.64048 1.13636 1.09690 1.17047 0.79011 0.86627 0.82073 1.90804 1.51518 1.14807 1.84516 1.25524 1.09893 0.98193 1.00045 1.20715 0.98981 1.01874 0.89965 1.19907 0.98243 0.90436 1.01995 1.24369 1.19596 0.99537 1.03136 1.17167 0.75384 0.80606 0.77915 1.93246 1.55174 1.81800 1.85009 1.93207 1.72670 1.86899 1.62341 1.93237 1.78443 1.70054 1.73608 1.83319 1.55931 1.05822 0.98726 0.95084 0.92553 0.93199 0.92075 0.77521 0.81838 0.82818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.47 37.16 0.35 -2.78 16 2 C 0.23 5.30 2.22 -69.09 -0.15 5.15 16 3 H 0.05 1.34 4.73 -51.93 -0.25 1.10 16 4 C -0.53 -13.90 9.05 -34.44 -0.31 -14.21 16 5 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 7 N -0.88 -25.35 13.96 55.43 0.77 -24.58 16 8 Si 0.87 20.88 26.99 -169.99 -4.59 16.29 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.26 -6.08 6.82 56.52 0.39 -5.70 16 12 N -0.69 -13.59 5.06 -56.28 -0.29 -13.87 16 13 C 0.57 10.70 7.75 -12.90 -0.10 10.60 16 14 O -0.54 -11.77 16.50 5.19 0.09 -11.68 16 15 C -0.21 -3.13 6.45 -36.79 -0.24 -3.36 16 16 C -0.08 -1.03 10.01 -40.43 -0.40 -1.44 16 17 C -0.07 -0.74 9.63 -41.41 -0.40 -1.14 16 18 C -0.35 -3.87 5.76 -35.86 -0.21 -4.07 16 19 C 0.55 5.82 3.50 36.01 0.13 5.95 16 20 F -0.17 -1.85 17.30 2.25 0.04 -1.81 16 21 F -0.17 -1.76 16.88 2.25 0.04 -1.73 16 22 F -0.17 -1.91 16.97 2.25 0.04 -1.88 16 23 S 0.29 3.50 21.74 -107.50 -2.34 1.16 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.39 6.79 7.71 -40.82 -0.31 6.48 16 29 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 30 H 0.15 1.21 7.96 -52.49 -0.42 0.80 16 LS Contribution 294.97 15.07 4.45 4.45 Total: -1.00 -29.39 294.97 -5.47 -34.85 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -2.24 Total: 1.94 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.43 Total: -3.14 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.49 Total: -38.45 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.12 Total: -5.42 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.59 Total: 16.29 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -2.34 Total: 1.16 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.39 -5.47 -34.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586759642.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.666 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds