Wall clock time and date at job start Tue Mar 31 2020 06:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47472 * 2 1 4 4 C 1.50697 * 109.46843 * 239.99853 * 2 1 3 5 5 H 1.08001 * 120.00046 * 275.00122 * 4 2 1 6 6 C 1.37881 * 120.00166 * 95.01031 * 4 2 1 7 7 N 1.31507 * 120.00265 * 184.91565 * 6 4 2 8 8 Si 1.86797 * 119.99764 * 4.90744 * 6 4 2 9 9 H 1.48503 * 109.47214 * 84.83708 * 8 6 4 10 10 H 1.48502 * 109.47442 * 204.83829 * 8 6 4 11 11 H 1.48499 * 109.47323 * 324.83923 * 8 6 4 12 12 N 1.46498 * 109.46941 * 120.00149 * 2 1 3 13 13 C 1.34772 * 120.00003 * 274.99838 * 12 2 1 14 14 O 1.21703 * 120.00017 * 359.97438 * 13 12 2 15 15 C 1.46586 * 120.00162 * 180.02562 * 13 12 2 16 16 C 1.36648 * 125.45709 * 180.02562 * 15 13 12 17 17 C 1.37475 * 113.29305 * 179.97438 * 16 15 13 18 18 C 1.33812 * 115.10405 * 359.97438 * 17 16 15 19 19 C 1.50700 * 124.52164 * 180.02562 * 18 17 16 20 20 F 1.39904 * 109.46943 * 89.99703 * 19 18 17 21 21 F 1.39889 * 109.47334 * 329.99802 * 19 18 17 22 22 F 1.39905 * 109.47010 * 209.99621 * 19 18 17 23 23 S 1.70620 * 110.95407 * 0.26275 * 18 17 16 24 24 H 1.09000 * 109.47137 * 295.04044 * 1 2 3 25 25 H 1.09000 * 109.46806 * 55.03404 * 1 2 3 26 26 H 1.08996 * 109.47676 * 175.03528 * 1 2 3 27 27 H 0.97000 * 120.00118 * 179.97438 * 7 6 4 28 28 H 0.96999 * 119.99896 * 94.99933 * 12 2 1 29 29 H 1.07997 * 123.35368 * 359.97438 * 16 15 13 30 30 H 1.08001 * 122.44695 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.1353 -1.7855 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3137 1.8790 -2.3174 9 1 3.5993 2.3947 -1.7821 10 1 2.1060 2.3991 -3.6928 11 1 1.1988 2.3275 -1.4450 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8580 1.1626 2.4116 15 6 2.6361 -0.7092 3.5538 16 6 2.8084 -0.1389 4.7836 17 6 3.2803 -1.0181 5.7293 18 6 3.4873 -2.2655 5.2915 19 6 3.9996 -3.3964 6.1458 20 9 2.9190 -4.0647 6.7316 21 9 4.8301 -2.8844 7.1483 22 9 4.7249 -4.2901 5.3505 23 16 3.1001 -2.4032 3.6356 24 1 -0.3633 0.4350 0.9311 25 1 -0.3633 0.5890 -0.8422 26 1 -0.3634 -1.0237 -0.0889 27 1 2.9364 -0.1049 -4.2555 28 1 2.2489 -1.6318 1.1526 29 1 2.5952 0.8991 4.9918 30 1 3.4693 -0.7237 6.7510 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586759642.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:17 Heat of formation + Delta-G solvation = -176.962156 kcal Electronic energy + Delta-G solvation = -20585.132792 eV Core-core repulsion = 16670.388545 eV Total energy + Delta-G solvation = -3914.744247 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.044 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.29005 -48.81885 -48.76122 -40.88988 -38.92865 -36.77886 -34.47173 -32.65345 -31.32645 -27.80815 -27.34097 -24.89102 -23.54263 -21.73919 -21.06460 -20.56520 -19.64157 -19.50326 -18.72874 -17.84333 -17.39889 -16.84492 -16.12708 -16.10362 -15.68137 -15.63223 -15.29569 -15.19673 -14.93873 -14.91586 -14.69890 -14.56499 -14.28668 -14.11992 -13.62422 -13.40165 -13.30267 -13.03482 -12.80991 -12.48097 -12.20897 -11.88443 -11.27616 -11.18817 -10.85434 -10.40650 -9.96353 -9.80291 -8.40316 -6.47992 -0.96655 -0.01338 0.49384 1.06785 1.30274 1.35255 1.44769 1.47979 2.06248 2.19205 2.26659 2.51648 3.00683 3.02180 3.20269 3.72704 3.98639 4.19652 4.41081 4.64084 4.69557 4.77836 4.84526 5.04263 5.06901 5.29870 5.42037 5.58863 6.05704 6.55031 6.67737 7.09771 7.23499 8.74367 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.029680 B = 0.003883 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.174882 B = 7208.342458 C = 7599.729469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.233 3.767 3 H 0.037 0.963 4 C -0.531 4.531 5 H 0.058 0.942 6 C 0.036 3.964 7 N -0.927 5.927 8 Si 0.925 3.075 9 H -0.273 1.273 10 H -0.277 1.277 11 H -0.253 1.253 12 N -0.697 5.697 13 C 0.573 3.427 14 O -0.573 6.573 15 C -0.252 4.252 16 C -0.064 4.064 17 C -0.064 4.064 18 C -0.340 4.340 19 C 0.550 3.450 20 F -0.170 7.170 21 F -0.165 7.165 22 F -0.175 7.175 23 S 0.308 5.692 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.272 0.728 28 H 0.401 0.599 29 H 0.172 0.828 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.810 -4.601 20.649 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.130 3.870 3 H 0.055 0.945 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.165 4.165 7 N -0.565 5.565 8 Si 0.750 3.250 9 H -0.199 1.199 10 H -0.202 1.202 11 H -0.177 1.177 12 N -0.345 5.345 13 C 0.359 3.641 14 O -0.455 6.455 15 C -0.374 4.374 16 C -0.097 4.097 17 C -0.098 4.098 18 C -0.461 4.461 19 C 0.494 3.506 20 F -0.151 7.151 21 F -0.146 7.146 22 F -0.156 7.156 23 S 0.579 5.421 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.236 0.764 29 H 0.190 0.810 30 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.709 -5.035 19.381 20.097 hybrid contribution 0.282 1.271 0.625 1.444 sum 1.991 -3.763 20.005 20.453 Atomic orbital electron populations 1.22127 0.96568 1.01565 0.99886 1.19019 0.92377 0.93299 0.82324 0.94497 1.21146 1.44877 0.94865 0.96015 0.92401 1.25592 0.93503 1.02489 0.94885 1.69967 1.46148 1.37882 1.02473 0.86077 0.79863 0.81226 0.77877 1.19888 1.20217 1.17671 1.46417 1.64642 1.14106 1.09379 1.17388 0.77859 0.86200 0.82620 1.90772 1.53067 1.16406 1.85298 1.25058 1.13279 0.99886 0.99131 1.20951 0.96984 1.02500 0.89285 1.20130 0.97138 0.89524 1.03027 1.24555 1.18650 1.00131 1.02715 1.17042 0.75366 0.80313 0.77849 1.93255 1.55173 1.81757 1.84959 1.93223 1.72510 1.86807 1.62068 1.93239 1.78509 1.70137 1.73737 1.83281 1.55597 1.03777 0.99428 0.94094 0.92873 0.92235 0.91897 0.76378 0.81037 0.79636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.89 9.47 71.98 0.68 -5.21 16 2 C 0.23 10.68 2.22 44.24 0.10 10.78 16 3 H 0.04 1.83 4.73 -2.39 -0.01 1.82 16 4 C -0.53 -27.92 9.05 25.60 0.23 -27.69 16 5 H 0.06 3.24 8.06 -2.91 -0.02 3.21 16 6 C 0.04 2.00 5.47 84.66 0.46 2.46 16 7 N -0.93 -53.98 13.96 21.45 0.30 -53.68 16 8 Si 0.93 43.15 26.99 68.60 1.85 45.00 16 9 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.25 -11.41 6.82 99.48 0.68 -10.73 16 12 N -0.70 -27.15 5.06 -450.18 -2.28 -29.43 16 13 C 0.57 21.20 7.75 86.42 0.67 21.87 16 14 O -0.57 -24.89 16.50 -4.36 -0.07 -24.96 16 15 C -0.25 -6.97 6.45 24.08 0.16 -6.82 16 16 C -0.06 -1.42 10.01 21.72 0.22 -1.20 16 17 C -0.06 -1.12 9.63 21.08 0.20 -0.92 16 18 C -0.34 -6.62 5.76 24.68 0.14 -6.48 16 19 C 0.55 10.19 3.50 71.24 0.25 10.44 16 20 F -0.17 -3.23 17.30 44.97 0.78 -2.45 16 21 F -0.16 -2.90 16.88 44.97 0.76 -2.14 16 22 F -0.17 -3.49 16.97 44.97 0.76 -2.73 16 23 S 0.31 6.85 21.74 -56.49 -1.23 5.62 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 28 H 0.40 13.87 7.71 -92.71 -0.71 13.16 16 29 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 30 H 0.19 2.07 7.96 -2.91 -0.02 2.05 16 Total: -1.00 -62.63 294.97 4.45 -58.18 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.47 Total: 9.36 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 3.11 Total: -2.77 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -1.98 Total: -83.11 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.07 Total: -24.96 kcal Atomic # 9 Polarization: -9.62 SS G_CDS: 2.30 Total: -7.32 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.85 Total: 45.00 kcal Atomic # 16 Polarization: 6.85 SS G_CDS: -1.23 Total: 5.62 kcal Total: -62.63 4.45 -58.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586759642.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.785 kcal (2) G-P(sol) polarization free energy of solvation -62.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds