Wall clock time and date at job start Tue Mar 31 2020 06:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48498 * 109.47010 * 270.00428 * 3 2 1 5 5 H 1.48501 * 109.47100 * 30.00373 * 3 2 1 6 6 H 1.48493 * 109.46842 * 150.00540 * 3 2 1 7 7 C 1.38802 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99838 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00066 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21293 * 119.99810 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.39932 * 119.99544 * 179.72985 * 13 11 10 15 15 N 1.30634 * 126.17189 * 359.68202 * 14 13 11 16 16 N 1.39843 * 110.04390 * 179.84751 * 15 14 13 17 17 H 0.97007 * 125.40915 * 180.14960 * 16 15 14 18 18 C 1.37087 * 109.18754 * 0.43383 * 16 15 14 19 19 C 1.39253 * 133.68681 * 179.73555 * 18 16 15 20 20 C 1.38087 * 119.68401 * 180.02562 * 19 18 16 21 21 O 1.35901 * 119.72804 * 179.97438 * 20 19 18 22 22 C 1.39439 * 120.53643 * 359.96312 * 20 19 18 23 23 C 1.36384 * 120.56306 * 0.02562 * 22 20 19 24 24 C 1.39841 * 119.86817 * 359.97438 * 23 22 20 25 25 H 0.96999 * 119.99741 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.46810 * 59.99567 * 10 9 7 27 27 H 1.08998 * 109.46824 * 300.00077 * 10 9 7 28 28 H 0.97001 * 120.00485 * 359.71840 * 13 11 10 29 29 H 1.07990 * 120.15785 * 0.02562 * 19 18 16 30 30 H 0.96705 * 114.00357 * 269.97762 * 21 20 19 31 31 H 1.08002 * 119.72254 * 179.97438 * 22 20 19 32 32 H 1.07998 * 120.06355 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7910 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3535 -7.6535 0.0090 15 7 1.0955 -8.0057 0.0167 16 7 0.9882 -9.4000 0.0175 17 1 0.1567 -9.8997 0.0205 18 6 2.2445 -9.9487 0.0197 19 6 2.7229 -11.2564 0.0259 20 6 4.0845 -11.4864 0.0271 21 8 4.5524 -12.7623 0.0337 22 6 4.9831 -10.4202 0.0213 23 6 4.5321 -9.1331 0.0149 24 6 3.1573 -8.8769 0.0136 25 1 -0.4850 0.8401 0.0004 26 1 3.1252 -3.7317 0.8875 27 1 3.1238 -3.7309 -0.8925 28 1 3.8010 -6.1835 0.0019 29 1 2.0324 -12.0867 0.0298 30 1 4.6882 -13.1269 0.9190 31 1 6.0454 -10.6152 0.0227 32 1 5.2352 -8.3134 0.0100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590558130.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:35 Heat of formation + Delta-G solvation = 16.350573 kcal Electronic energy + Delta-G solvation = -19441.696503 eV Core-core repulsion = 16109.484416 eV Total energy + Delta-G solvation = -3332.212087 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.56247 -39.46234 -38.68795 -35.82364 -34.83207 -32.46219 -31.84009 -29.89006 -29.24912 -28.61612 -25.53385 -23.44951 -22.83386 -21.99423 -20.07434 -18.88606 -18.25769 -17.54451 -16.81846 -16.46100 -16.03837 -15.73974 -15.52348 -14.91029 -14.83245 -14.50972 -14.20603 -14.07896 -13.40648 -13.02632 -12.65102 -12.43716 -12.22349 -11.75779 -11.16684 -11.10488 -11.07582 -11.05095 -10.83694 -10.73802 -9.87192 -9.56227 -9.47345 -9.09639 -8.74407 -8.30101 -7.94350 -6.55368 -6.24940 -3.96595 0.58860 1.16197 2.19992 2.27029 2.89478 3.06794 3.20877 3.23558 3.28588 3.39945 3.50366 3.87787 4.16200 4.20984 4.45764 4.66298 4.84436 5.01584 5.09611 5.10483 5.27936 5.49241 5.61973 5.69847 5.77126 5.94247 6.03192 6.07218 6.29554 6.59827 6.95297 7.22499 7.28799 7.56483 7.74495 8.31697 8.37477 9.20326 10.82451 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.046338 B = 0.002749 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.112409 B =10182.698058 C =10769.019897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.074 0.926 9 S -0.055 6.055 10 C -0.150 4.150 11 C 0.522 3.478 12 O -0.463 6.463 13 N -0.640 5.640 14 C 0.328 3.672 15 N -0.233 5.233 16 N -0.505 5.505 17 H 0.443 0.557 18 C 0.160 3.840 19 C -0.177 4.177 20 C 0.158 3.842 21 O -0.498 6.498 22 C -0.188 4.188 23 C -0.018 4.018 24 C -0.191 4.191 25 H 0.269 0.731 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.420 0.580 29 H 0.134 0.866 30 H 0.394 0.606 31 H 0.134 0.866 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.386 -22.657 1.723 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.092 0.908 9 S 0.171 5.829 10 C -0.301 4.301 11 C 0.308 3.692 12 O -0.329 6.329 13 N -0.293 5.293 14 C 0.059 3.941 15 N -0.056 5.056 16 N -0.220 5.220 17 H 0.288 0.712 18 C 0.041 3.959 19 C -0.200 4.200 20 C 0.111 3.889 21 O -0.309 6.309 22 C -0.209 4.209 23 C -0.038 4.038 24 C -0.201 4.201 25 H 0.079 0.921 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.257 0.743 29 H 0.151 0.849 30 H 0.251 0.749 31 H 0.151 0.849 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.947 -22.271 1.124 23.674 hybrid contribution 2.789 0.660 0.470 2.904 sum 10.736 -21.611 1.594 24.184 Atomic orbital electron populations 1.70016 1.05978 1.27558 1.46652 1.25006 0.95042 0.99091 0.94456 0.86145 0.79388 0.81459 0.78373 1.20239 1.20747 1.19652 1.22853 0.94946 0.91469 1.59220 0.90755 1.85496 1.04308 0.96317 1.96760 1.23522 1.07101 0.93941 1.05529 1.20732 0.86708 0.86034 0.75718 1.90820 1.14668 1.84461 1.42978 1.43232 1.11134 1.00735 1.74192 1.20294 0.90108 0.85058 0.98591 1.77394 1.15633 0.89243 1.23332 1.45947 1.05721 1.03032 1.67336 0.71190 1.18498 0.86246 0.93518 0.97627 1.20182 0.95359 0.93604 1.10882 1.18103 0.90075 0.83979 0.96775 1.84804 1.86761 1.25621 1.33672 1.20820 1.00188 0.91693 1.08151 1.20139 0.92484 0.96876 0.94330 1.19474 0.94349 0.90412 1.15888 0.92112 0.88575 0.88573 0.74301 0.84856 0.74942 0.84860 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.96 9.50 30.94 0.29 -14.67 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 16 10 C -0.15 -2.89 6.16 36.01 0.22 -2.67 16 11 C 0.52 9.74 7.81 -10.98 -0.09 9.65 16 12 O -0.46 -10.69 14.60 5.55 0.08 -10.61 16 13 N -0.64 -8.95 5.44 -9.72 -0.05 -9.01 16 14 C 0.33 4.89 8.06 -152.64 -1.23 3.66 16 15 N -0.23 -3.92 10.79 32.61 0.35 -3.57 16 16 N -0.50 -6.31 7.36 32.35 0.24 -6.07 16 17 H 0.44 4.11 8.96 -182.78 -1.64 2.48 16 18 C 0.16 1.82 7.32 -84.18 -0.62 1.21 16 19 C -0.18 -1.61 10.01 -39.26 -0.39 -2.00 16 20 C 0.16 1.33 6.69 -39.19 -0.26 1.07 16 21 O -0.50 -3.42 13.49 -19.43 -0.26 -3.69 16 22 C -0.19 -1.51 9.90 -39.80 -0.39 -1.91 16 23 C -0.02 -0.16 10.04 -39.65 -0.40 -0.56 16 24 C -0.19 -2.28 6.37 -105.06 -0.67 -2.95 16 25 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.10 1.65 8.14 -51.91 -0.42 1.23 16 27 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 28 H 0.42 3.99 8.82 -40.82 -0.36 3.63 16 29 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.39 0.75 9.06 45.56 0.41 1.16 16 31 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 307.12 15.07 4.63 4.63 Total: -1.00 -37.65 307.12 -8.39 -46.04 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -3.24 Total: 2.25 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -3.63 Total: -7.19 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 1.27 Total: -43.83 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.18 Total: -14.29 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -37.65 -8.39 -46.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590558130.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.394 kcal (2) G-P(sol) polarization free energy of solvation -37.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds