Wall clock time and date at job start Tue Mar 31 2020 06:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48498 * 109.47010 * 270.00428 * 3 2 1 5 5 H 1.48501 * 109.47100 * 30.00373 * 3 2 1 6 6 H 1.48493 * 109.46842 * 150.00540 * 3 2 1 7 7 C 1.38802 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99838 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00066 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21293 * 119.99810 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.39932 * 119.99544 * 179.72985 * 13 11 10 15 15 N 1.30634 * 126.17189 * 359.68202 * 14 13 11 16 16 N 1.39843 * 110.04390 * 179.84751 * 15 14 13 17 17 H 0.97007 * 125.40915 * 180.14960 * 16 15 14 18 18 C 1.37087 * 109.18754 * 0.43383 * 16 15 14 19 19 C 1.39253 * 133.68681 * 179.73555 * 18 16 15 20 20 C 1.38087 * 119.68401 * 180.02562 * 19 18 16 21 21 O 1.35901 * 119.72804 * 179.97438 * 20 19 18 22 22 C 1.39439 * 120.53643 * 359.96312 * 20 19 18 23 23 C 1.36384 * 120.56306 * 0.02562 * 22 20 19 24 24 C 1.39841 * 119.86817 * 359.97438 * 23 22 20 25 25 H 0.96999 * 119.99741 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.46810 * 59.99567 * 10 9 7 27 27 H 1.08998 * 109.46824 * 300.00077 * 10 9 7 28 28 H 0.97001 * 120.00485 * 359.71840 * 13 11 10 29 29 H 1.07990 * 120.15785 * 0.02562 * 19 18 16 30 30 H 0.96705 * 114.00357 * 269.97762 * 21 20 19 31 31 H 1.08002 * 119.72254 * 179.97438 * 22 20 19 32 32 H 1.07998 * 120.06355 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7910 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3535 -7.6535 0.0090 15 7 1.0955 -8.0057 0.0167 16 7 0.9882 -9.4000 0.0175 17 1 0.1567 -9.8997 0.0205 18 6 2.2445 -9.9487 0.0197 19 6 2.7229 -11.2564 0.0259 20 6 4.0845 -11.4864 0.0271 21 8 4.5524 -12.7623 0.0337 22 6 4.9831 -10.4202 0.0213 23 6 4.5321 -9.1331 0.0149 24 6 3.1573 -8.8769 0.0136 25 1 -0.4850 0.8401 0.0004 26 1 3.1252 -3.7317 0.8875 27 1 3.1238 -3.7309 -0.8925 28 1 3.8010 -6.1835 0.0019 29 1 2.0324 -12.0867 0.0298 30 1 4.6882 -13.1269 0.9190 31 1 6.0454 -10.6152 0.0227 32 1 5.2352 -8.3134 0.0100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590558130.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:35 Heat of formation + Delta-G solvation = -13.289350 kcal Electronic energy + Delta-G solvation = -19442.981786 eV Core-core repulsion = 16109.484416 eV Total energy + Delta-G solvation = -3333.497370 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.48295 -40.72054 -39.47668 -36.53117 -36.09900 -34.57363 -32.85157 -31.04753 -30.05366 -29.76561 -27.66454 -24.30260 -23.76019 -22.95535 -21.28700 -19.97915 -19.59012 -18.71142 -17.85446 -17.60152 -17.09079 -16.86889 -16.86309 -16.37896 -16.01621 -15.81483 -15.40875 -14.97138 -14.80646 -14.50688 -13.83898 -13.67033 -13.16033 -12.93306 -12.88691 -12.66323 -12.60363 -12.24560 -11.98275 -11.74252 -11.54542 -11.13155 -11.02214 -10.44077 -10.27715 -9.55108 -8.85264 -8.66720 -8.33784 -6.12342 -0.16386 0.43202 1.04794 1.08064 1.38743 1.44466 1.53869 1.64499 1.85301 2.12039 2.27501 2.64052 3.00967 3.20628 3.31758 3.37104 3.64722 3.74916 4.08878 4.23078 4.28871 4.37347 4.49285 4.60826 4.84250 4.94246 5.26559 5.41225 5.43863 5.48744 5.70183 5.97177 6.21282 6.39515 6.66031 6.88061 7.07323 7.08237 8.75434 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.046338 B = 0.002749 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.112409 B =10182.698058 C =10769.019897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.088 0.912 9 S -0.153 6.153 10 C -0.123 4.123 11 C 0.527 3.473 12 O -0.516 6.516 13 N -0.616 5.616 14 C 0.312 3.688 15 N -0.289 5.289 16 N -0.503 5.503 17 H 0.451 0.549 18 C 0.148 3.852 19 C -0.185 4.185 20 C 0.168 3.832 21 O -0.504 6.504 22 C -0.183 4.183 23 C -0.017 4.017 24 C -0.206 4.206 25 H 0.270 0.730 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.442 0.558 29 H 0.150 0.850 30 H 0.418 0.582 31 H 0.161 0.839 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.124 -23.868 1.837 28.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.179 1.179 7 C -0.691 4.691 8 H 0.107 0.893 9 S 0.074 5.926 10 C -0.274 4.274 11 C 0.313 3.687 12 O -0.387 6.387 13 N -0.270 5.270 14 C 0.044 3.956 15 N -0.113 5.113 16 N -0.221 5.221 17 H 0.298 0.702 18 C 0.031 3.969 19 C -0.207 4.207 20 C 0.121 3.879 21 O -0.318 6.318 22 C -0.202 4.202 23 C -0.037 4.037 24 C -0.215 4.215 25 H 0.079 0.921 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.283 0.717 29 H 0.168 0.832 30 H 0.279 0.721 31 H 0.178 0.822 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.757 -23.543 1.256 26.345 hybrid contribution 1.740 0.727 0.444 1.938 sum 13.498 -22.816 1.700 26.564 Atomic orbital electron populations 1.70194 1.08072 1.28596 1.48115 1.26159 0.95949 1.03444 0.93786 0.84927 0.78248 0.75893 0.78750 1.19380 1.20590 1.17887 1.23213 0.95522 0.91621 1.58706 0.89349 1.85733 1.10294 0.99427 1.97108 1.23324 1.03891 0.92148 1.08022 1.20573 0.86322 0.86661 0.75183 1.90810 1.16958 1.85196 1.45743 1.42761 1.11653 0.99866 1.72752 1.20496 0.90522 0.85588 0.98946 1.77227 1.17568 0.91778 1.24701 1.45818 1.06842 1.01775 1.67670 0.70210 1.18806 0.85574 0.94494 0.98044 1.20386 0.96291 0.93020 1.11037 1.18238 0.89820 0.84866 0.95008 1.84752 1.86440 1.24774 1.35820 1.21163 1.01515 0.91059 1.06512 1.20486 0.91458 0.98363 0.93434 1.19593 0.95743 0.88829 1.17369 0.92061 0.85888 0.85927 0.71651 0.83226 0.72150 0.82188 0.82051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 2 C 0.01 0.63 5.49 84.86 0.47 1.10 16 3 Si 1.00 43.00 29.55 68.60 2.03 45.02 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.54 -30.29 9.50 67.95 0.65 -29.64 16 8 H 0.09 4.49 7.80 -2.91 -0.02 4.47 16 9 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 10 C -0.12 -4.61 6.16 71.24 0.44 -4.18 16 11 C 0.53 19.70 7.81 87.66 0.68 20.39 16 12 O -0.52 -24.88 14.60 -3.07 -0.04 -24.92 16 13 N -0.62 -16.65 5.44 -303.04 -1.65 -18.30 16 14 C 0.31 9.26 8.06 135.17 1.09 10.35 16 15 N -0.29 -10.08 10.79 -50.74 -0.55 -10.63 16 16 N -0.50 -12.88 7.36 -51.55 -0.38 -13.26 16 17 H 0.45 8.83 8.96 -213.48 -1.91 6.91 16 18 C 0.15 3.26 7.32 39.19 0.29 3.55 16 19 C -0.18 -2.97 10.01 22.48 0.22 -2.75 16 20 C 0.17 2.28 6.69 22.52 0.15 2.43 16 21 O -0.50 -5.04 13.49 -92.44 -1.25 -6.29 16 22 C -0.18 -2.22 9.90 22.13 0.22 -2.00 16 23 C -0.02 -0.25 10.04 22.23 0.22 -0.03 16 24 C -0.21 -4.62 6.37 -20.15 -0.13 -4.75 16 25 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 26 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 27 H 0.12 3.97 8.14 -2.40 -0.02 3.95 16 28 H 0.44 7.33 8.82 -92.71 -0.82 6.51 16 29 H 0.15 1.81 8.06 -2.92 -0.02 1.79 16 30 H 0.42 -0.04 9.06 -74.05 -0.67 -0.71 16 31 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -85.67 307.12 -0.60 -86.26 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -2.19 Total: 12.87 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 4.30 Total: -5.52 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -2.29 Total: -97.91 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -1.29 Total: -31.21 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -85.67 -0.60 -86.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590558130.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.975 kcal (2) G-P(sol) polarization free energy of solvation -85.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds