Wall clock time and date at job start Tue Mar 31 2020 07:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.32977 * 119.70665 * 8.88816 * 3 2 1 5 5 C 1.32083 * 121.52580 * 180.28538 * 4 3 2 6 6 N 1.39029 * 119.61259 * 179.71645 * 5 4 3 7 7 C 1.47899 * 110.99987 * 119.85511 * 6 5 4 8 8 C 1.53997 * 107.05889 * 145.84009 * 7 6 5 9 9 C 1.54593 * 105.13807 * 358.77516 * 8 7 6 10 10 O 1.42904 * 110.72258 * 96.40366 * 9 8 7 11 11 C 1.50705 * 110.72583 * 219.68092 * 9 8 7 12 12 H 1.07993 * 119.99953 * 118.54560 * 11 9 8 13 13 C 1.37878 * 119.99835 * 298.55374 * 11 9 8 14 14 N 1.31514 * 120.00255 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99873 * 179.97438 * 13 11 9 16 16 H 1.48511 * 109.47020 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47273 * 119.99517 * 15 13 11 18 18 H 1.48497 * 109.47130 * 239.99689 * 15 13 11 19 19 C 1.48538 * 110.99863 * 237.25137 * 6 5 4 20 20 C 1.39426 * 120.77005 * 359.44176 * 5 4 3 21 21 C 1.38291 * 119.33838 * 0.27186 * 20 5 4 22 22 C 1.38877 * 118.58603 * 0.02562 * 21 20 5 23 23 Cl 1.73606 * 120.40203 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.91646 * 26.49036 * 7 6 5 25 25 H 1.09001 * 110.08341 * 265.28712 * 7 6 5 26 26 H 1.09004 * 110.30998 * 117.69119 * 8 7 6 27 27 H 1.08998 * 110.30811 * 239.85930 * 8 7 6 28 28 H 0.96700 * 114.00523 * 61.45046 * 10 9 8 29 29 H 0.96994 * 120.00103 * 180.02562 * 14 13 11 30 30 H 1.09007 * 110.66246 * 318.71433 * 19 6 5 31 31 H 1.08993 * 110.66698 * 81.84127 * 19 6 5 32 32 H 1.08002 * 120.33305 * 180.25546 * 20 5 4 33 33 H 1.07998 * 120.70295 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2274 -1.1402 -0.1785 5 6 4.5476 -1.1819 -0.1794 6 7 5.1964 -2.3976 -0.3637 7 6 6.0566 -2.3624 -1.5664 8 6 7.2887 -3.2361 -1.2663 9 6 7.0856 -3.7366 0.1822 10 8 6.5033 -5.0416 0.1893 11 6 8.3900 -3.7290 0.9369 12 1 8.5017 -3.1117 1.8159 13 6 9.4409 -4.5102 0.5050 14 7 9.3048 -5.2622 -0.5653 15 14 11.0580 -4.5003 1.4401 16 1 10.9542 -3.5769 2.5986 17 1 11.3579 -5.8715 1.9247 18 1 12.1474 -4.0440 0.5400 19 6 6.1035 -2.6948 0.7743 20 6 5.2981 -0.0201 -0.0034 21 6 4.6468 1.1860 0.1795 22 6 3.2581 1.1977 0.1819 23 17 2.3924 2.6854 0.4081 24 1 6.3685 -1.3379 -1.7698 25 1 5.5170 -2.7634 -2.4244 26 1 7.3313 -4.0795 -1.9555 27 1 8.1999 -2.6422 -1.3371 28 1 7.0458 -5.7168 -0.2408 29 1 10.0440 -5.8120 -0.8689 30 1 6.6370 -1.7967 1.0857 31 1 5.5468 -3.1215 1.6086 32 1 6.3773 -0.0618 -0.0094 33 1 5.2063 2.0993 0.3183 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591976071.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:15 Heat of formation + Delta-G solvation = 16.919943 kcal Electronic energy + Delta-G solvation = -20557.999327 eV Core-core repulsion = 17223.768224 eV Total energy + Delta-G solvation = -3334.231103 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.05784 -39.92908 -37.96962 -37.76234 -36.49362 -34.12016 -33.88587 -32.70636 -30.03918 -29.87662 -26.67520 -26.14665 -24.23081 -22.36995 -21.45450 -20.34963 -19.11904 -18.23454 -17.73884 -17.36607 -16.87062 -16.45523 -16.07821 -15.59136 -15.03464 -14.86314 -14.63799 -14.37604 -14.16093 -14.08335 -13.82483 -13.75638 -13.53296 -13.19866 -13.00454 -12.77723 -12.53262 -12.43130 -12.33459 -12.17239 -11.76998 -11.15616 -11.10925 -11.05107 -10.57284 -10.07086 -9.99525 -9.45613 -8.16492 -6.32010 -0.82501 -0.18538 0.69325 1.18304 1.45099 1.50278 1.51229 1.59088 2.08186 2.42833 2.48512 2.73783 3.10107 3.44725 3.57776 3.72325 3.91121 4.03859 4.10392 4.24404 4.40264 4.52783 4.62639 4.70927 4.85980 4.97938 5.07765 5.19350 5.45057 5.61363 5.69401 5.85556 5.94458 6.08640 6.23059 6.69658 6.75086 7.40270 7.52341 8.89149 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.003730 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.855478 B = 7505.588248 C = 8002.893098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.279 3.721 3 C 0.200 3.800 4 N -0.455 5.455 5 C 0.308 3.692 6 N -0.500 5.500 7 C 0.054 3.946 8 C -0.118 4.118 9 C 0.239 3.761 10 O -0.593 6.593 11 C -0.557 4.557 12 H 0.062 0.938 13 C 0.034 3.966 14 N -0.910 5.910 15 Si 0.956 3.044 16 H -0.267 1.267 17 H -0.287 1.287 18 H -0.278 1.278 19 C 0.072 3.928 20 C -0.149 4.149 21 C -0.030 4.030 22 C -0.047 4.047 23 Cl -0.027 7.027 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.373 0.627 29 H 0.268 0.732 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.176 0.824 33 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.885 15.955 -0.391 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.039 4.039 3 C 0.060 3.940 4 N -0.167 5.167 5 C 0.076 3.924 6 N -0.223 5.223 7 C -0.072 4.072 8 C -0.157 4.157 9 C 0.199 3.801 10 O -0.401 6.401 11 C -0.595 4.595 12 H 0.080 0.920 13 C -0.168 4.168 14 N -0.550 5.550 15 Si 0.783 3.217 16 H -0.192 1.192 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.054 4.054 20 C -0.173 4.173 21 C -0.056 4.056 22 C -0.079 4.079 23 Cl 0.002 6.998 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.221 0.779 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.193 0.807 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.999 15.103 -0.355 16.649 hybrid contribution 2.517 0.334 0.199 2.547 sum -4.481 15.437 -0.156 16.075 Atomic orbital electron populations 1.81197 1.11867 1.07221 1.07630 1.24923 0.91670 0.93328 0.93958 1.15988 0.85997 0.88706 1.03334 1.67167 1.11031 1.26710 1.11746 1.20004 0.88096 0.90390 0.93954 1.61441 1.28729 1.27095 1.05013 1.22988 0.92765 1.00276 0.91157 1.22751 0.95295 0.98492 0.99170 1.19614 0.88793 0.80493 0.91155 1.86165 1.50607 1.20642 1.82646 1.21850 0.97523 1.27215 1.12930 0.91951 1.25629 1.01591 0.94286 0.95251 1.69824 1.33564 1.27521 1.24046 0.85536 0.79642 0.77668 0.78893 1.19162 1.21349 1.20415 1.23246 0.92075 0.98342 0.91727 1.23182 1.04042 0.92026 0.98023 1.21824 0.90267 1.00395 0.93114 1.21935 0.94319 0.87560 1.04113 1.98423 1.76110 1.30352 1.94884 0.91033 0.90866 0.93141 0.91859 0.77858 0.92289 0.90272 0.91814 0.80691 0.78168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -12.02 18.54 19.00 0.35 -11.67 16 2 C 0.28 7.68 14.57 88.33 1.29 8.96 16 3 C 0.20 5.10 6.58 40.49 0.27 5.37 16 4 N -0.45 -14.11 10.31 -186.50 -1.92 -16.03 16 5 C 0.31 8.98 5.84 133.22 0.78 9.75 16 6 N -0.50 -17.74 5.36 -689.29 -3.70 -21.44 16 7 C 0.05 1.79 6.50 86.45 0.56 2.35 16 8 C -0.12 -4.82 5.26 31.47 0.17 -4.66 16 9 C 0.24 10.89 0.95 -10.34 -0.01 10.88 16 10 O -0.59 -30.23 13.09 -148.98 -1.95 -32.18 16 11 C -0.56 -27.10 8.14 25.60 0.21 -26.89 16 12 H 0.06 2.97 7.78 -2.91 -0.02 2.94 16 13 C 0.03 1.63 5.28 84.65 0.45 2.08 16 14 N -0.91 -45.79 11.02 21.45 0.24 -45.56 16 15 Si 0.96 39.13 29.54 68.60 2.03 41.16 16 16 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 17 H -0.29 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 19 C 0.07 2.76 5.53 86.65 0.48 3.24 16 20 C -0.15 -2.97 7.88 22.57 0.18 -2.79 16 21 C -0.03 -0.44 9.96 22.44 0.22 -0.21 16 22 C -0.05 -0.88 6.36 22.69 0.14 -0.74 16 23 Cl -0.03 -0.44 28.03 -2.72 -0.08 -0.52 16 24 H 0.07 1.88 6.66 -2.39 -0.02 1.87 16 25 H 0.07 2.42 8.14 -2.39 -0.02 2.41 16 26 H 0.05 2.26 7.99 -2.39 -0.02 2.24 16 27 H 0.06 2.59 7.84 -2.39 -0.02 2.58 16 28 H 0.37 19.35 7.48 -74.06 -0.55 18.80 16 29 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 30 H 0.08 2.61 6.51 -2.38 -0.02 2.59 16 31 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.18 2.93 7.03 -2.91 -0.02 2.91 16 33 H 0.20 1.22 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -58.53 304.02 0.32 -58.21 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.62 Total: 20.69 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 4.73 Total: 7.34 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -5.03 Total: -94.69 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.95 Total: -32.18 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.08 Total: -0.52 kcal Total: -58.53 0.32 -58.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976071.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.126 kcal (2) G-P(sol) polarization free energy of solvation -58.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds