Wall clock time and date at job start Tue Mar 31 2020 06:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.34944 * 117.00400 * 2 1 4 4 O 1.21683 * 119.99890 * 359.97438 * 3 2 1 5 5 C 1.41714 * 120.00234 * 179.97438 * 3 2 1 6 6 S 1.75824 * 125.48234 * 354.28604 * 5 3 2 7 7 C 1.70568 * 91.67631 * 180.20519 * 6 5 3 8 8 C 1.33627 * 111.17617 * 359.81230 * 7 6 5 9 9 C 1.37444 * 125.48326 * 174.14238 * 5 3 2 10 10 N 1.39927 * 123.48852 * 359.97438 * 9 5 3 11 11 C 1.36289 * 126.86476 * 129.32130 * 10 9 5 12 12 C 1.34980 * 106.77891 * 179.97438 * 11 10 9 13 13 C 1.50704 * 125.49343 * 179.73707 * 12 11 10 14 14 C 1.50701 * 109.46989 * 124.99952 * 13 12 11 15 15 H 1.07995 * 120.00370 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99715 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99852 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00080 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47135 * 89.99819 * 18 16 14 20 20 H 1.48498 * 109.47101 * 209.99308 * 18 16 14 21 21 H 1.48499 * 109.47166 * 329.99439 * 18 16 14 22 22 N 1.33359 * 109.01442 * 359.97438 * 12 11 10 23 23 N 1.28767 * 109.92636 * 0.02562 * 22 12 11 24 24 H 1.08999 * 109.46793 * 59.99985 * 1 2 3 25 25 H 1.08996 * 109.47476 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47270 * 300.00490 * 1 2 3 27 27 H 1.07998 * 124.41145 * 179.78174 * 7 6 5 28 28 H 1.08005 * 122.45259 * 179.97438 * 8 7 6 29 29 H 1.08001 * 126.61178 * 359.94034 * 11 10 9 30 30 H 1.08997 * 109.46685 * 244.99655 * 13 12 11 31 31 H 1.08999 * 109.47027 * 4.99485 * 13 12 11 32 32 H 0.97008 * 119.99642 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2023 0.0000 4 8 1.3791 2.2229 -0.0005 5 6 3.4569 1.2764 0.0005 6 16 4.5506 -0.0928 0.1438 7 6 5.9165 0.9249 0.0557 8 6 5.5570 2.2051 -0.0767 9 6 4.1955 2.4300 -0.1136 10 7 3.6262 3.7011 -0.2479 11 6 3.9195 4.8103 0.4878 12 6 3.1380 5.8063 0.0196 13 6 3.1174 7.2205 0.5399 14 6 3.3684 8.1776 -0.5968 15 1 3.5274 7.7997 -1.5959 16 6 3.3951 9.5358 -0.3612 17 7 3.6146 10.3711 -1.3530 18 14 3.1208 10.1895 1.3671 19 1 4.4249 10.2932 2.0699 20 1 2.4898 11.5318 1.2943 21 1 2.2298 9.2634 2.1111 22 7 2.3833 5.3358 -0.9742 23 7 2.6398 4.0889 -1.1676 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 6.9388 0.5797 0.1016 28 1 6.2787 3.0053 -0.1492 29 1 4.6383 4.8789 1.2909 30 1 2.1440 7.4303 0.9833 31 1 3.8942 7.3412 1.2949 32 1 3.6338 11.3267 -1.1871 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594646754.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:22 Heat of formation + Delta-G solvation = 65.881282 kcal Electronic energy + Delta-G solvation = -20366.856180 eV Core-core repulsion = 17036.791906 eV Total energy + Delta-G solvation = -3330.064274 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65147 -40.57284 -38.51463 -36.49198 -33.62818 -32.78122 -31.23356 -30.78861 -28.11566 -27.31583 -25.55324 -22.87877 -22.58477 -22.31728 -20.28253 -19.22369 -19.12095 -17.36269 -16.72475 -16.62950 -16.56913 -15.73110 -15.05617 -14.74588 -14.30805 -14.03296 -13.94943 -13.75997 -13.28773 -13.03885 -12.86904 -12.24470 -12.19401 -12.04061 -11.53023 -11.23487 -10.88859 -10.80165 -10.72815 -10.61411 -10.23292 -9.97823 -9.95766 -9.35297 -9.31453 -8.82819 -8.51551 -8.03548 -5.98697 -3.96808 -0.21175 0.88826 1.32072 1.53915 2.09453 2.56164 2.59313 2.75602 3.32251 3.37368 3.41527 3.44447 4.43291 4.47729 4.57975 4.80692 4.98075 5.00300 5.05615 5.22568 5.32989 5.38047 5.44519 5.53094 5.68916 5.81888 6.04740 6.20090 6.79161 7.04600 7.07341 7.21773 7.60394 7.73553 8.57822 8.89108 9.09768 9.60391 11.14771 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.023905 B = 0.003993 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.998878 B = 7010.868742 C = 7708.291501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.358 6.358 3 C 0.529 3.471 4 O -0.462 6.462 5 C -0.273 4.273 6 S 0.291 5.709 7 C -0.213 4.213 8 C -0.153 4.153 9 C 0.235 3.765 10 N -0.336 5.336 11 C -0.004 4.004 12 C 0.022 3.978 13 C 0.057 3.943 14 C -0.507 4.507 15 H 0.076 0.924 16 C 0.068 3.932 17 N -0.900 5.900 18 Si 0.876 3.124 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.264 1.264 22 N -0.210 5.210 23 N -0.039 5.039 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.184 0.816 28 H 0.160 0.840 29 H 0.187 0.813 30 H 0.038 0.962 31 H 0.032 0.968 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.846 -26.111 6.909 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.276 6.276 3 C 0.372 3.628 4 O -0.348 6.348 5 C -0.395 4.395 6 S 0.558 5.442 7 C -0.351 4.351 8 C -0.185 4.185 9 C 0.125 3.875 10 N -0.122 5.122 11 C -0.150 4.150 12 C -0.112 4.112 13 C 0.018 3.982 14 C -0.546 4.546 15 H 0.094 0.906 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.703 3.297 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.189 1.189 22 N -0.083 5.083 23 N -0.017 5.017 24 H 0.082 0.918 25 H 0.120 0.880 26 H 0.079 0.921 27 H 0.201 0.799 28 H 0.178 0.822 29 H 0.204 0.796 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.513 -27.596 5.873 28.325 hybrid contribution 0.763 2.330 1.454 2.851 sum 3.276 -25.266 7.327 26.510 Atomic orbital electron populations 1.22894 0.76271 1.03552 1.02871 1.86123 1.23776 1.32446 1.85249 1.18205 0.87148 0.82310 0.75183 1.91076 1.65592 1.35021 1.43085 1.22534 0.95893 0.98520 1.22515 1.83212 0.91272 1.05122 1.64555 1.25308 1.05941 0.97704 1.06178 1.19843 0.93727 0.98457 1.06468 1.16656 0.90730 0.82300 0.97850 1.47256 1.31263 1.05829 1.27826 1.23194 1.04952 0.85733 1.01157 1.22116 0.95596 0.98481 0.94978 1.18224 0.97824 0.85128 0.97030 1.20922 1.48629 0.89926 0.95105 0.90555 1.24966 0.94712 0.96756 0.96834 1.69906 1.50006 1.02745 1.31282 0.86838 0.78836 0.78625 0.85400 1.20210 1.21228 1.18862 1.74280 1.18756 1.01428 1.13805 1.82196 1.02489 1.06948 1.10027 0.91779 0.87971 0.92075 0.79915 0.82215 0.79553 0.94360 0.95007 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.45 101.05 1.06 1.42 16 2 O -0.36 -4.30 10.24 -41.16 -0.42 -4.72 16 3 C 0.53 7.97 7.72 32.06 0.25 8.22 16 4 O -0.46 -8.84 13.84 -19.41 -0.27 -9.11 16 5 C -0.27 -3.59 6.29 -38.54 -0.24 -3.83 16 6 S 0.29 2.25 22.83 -107.50 -2.45 -0.21 16 7 C -0.21 -1.48 10.90 29.12 0.32 -1.17 16 8 C -0.15 -1.56 10.01 -41.27 -0.41 -1.97 16 9 C 0.23 3.37 6.30 -84.52 -0.53 2.84 16 10 N -0.34 -6.27 3.18 -11.11 -0.04 -6.31 16 11 C 0.00 -0.07 11.35 -16.73 -0.19 -0.26 16 12 C 0.02 0.51 6.31 -83.08 -0.52 -0.02 16 13 C 0.06 1.41 4.60 -29.03 -0.13 1.27 16 14 C -0.51 -14.91 9.62 -34.44 -0.33 -15.24 16 15 H 0.08 2.50 7.98 -52.49 -0.42 2.08 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 17 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 18 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 22 N -0.21 -5.26 12.29 33.15 0.41 -4.85 16 23 N -0.04 -0.89 11.64 60.35 0.70 -0.19 16 24 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 25 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 27 H 0.18 0.63 8.06 -52.49 -0.42 0.20 16 28 H 0.16 1.46 8.06 -52.48 -0.42 1.03 16 29 H 0.19 2.60 8.06 -52.49 -0.42 2.17 16 30 H 0.04 0.96 7.20 -51.93 -0.37 0.59 16 31 H 0.03 0.71 7.53 -51.93 -0.39 0.32 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 304.79 15.07 4.59 4.59 Total: -1.00 -37.39 304.79 -5.10 -42.49 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: -2.89 Total: -4.23 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -0.84 Total: -6.82 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 1.85 Total: -38.77 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.69 Total: -13.83 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.45 Total: -0.21 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -37.39 -5.10 -42.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594646754.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.369 kcal (2) G-P(sol) polarization free energy of solvation -37.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds