Wall clock time and date at job start Tue Mar 31 2020 06:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.34944 * 117.00400 * 2 1 4 4 O 1.21683 * 119.99890 * 359.97438 * 3 2 1 5 5 C 1.41714 * 120.00234 * 179.97438 * 3 2 1 6 6 S 1.75824 * 125.48234 * 354.28604 * 5 3 2 7 7 C 1.70568 * 91.67631 * 180.20519 * 6 5 3 8 8 C 1.33627 * 111.17617 * 359.81230 * 7 6 5 9 9 C 1.37444 * 125.48326 * 174.14238 * 5 3 2 10 10 N 1.39927 * 123.48852 * 359.97438 * 9 5 3 11 11 C 1.36289 * 126.86476 * 129.32130 * 10 9 5 12 12 C 1.34980 * 106.77891 * 179.97438 * 11 10 9 13 13 C 1.50704 * 125.49343 * 179.73707 * 12 11 10 14 14 C 1.50701 * 109.46989 * 124.99952 * 13 12 11 15 15 H 1.07995 * 120.00370 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99715 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99852 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00080 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47135 * 89.99819 * 18 16 14 20 20 H 1.48498 * 109.47101 * 209.99308 * 18 16 14 21 21 H 1.48499 * 109.47166 * 329.99439 * 18 16 14 22 22 N 1.33359 * 109.01442 * 359.97438 * 12 11 10 23 23 N 1.28767 * 109.92636 * 0.02562 * 22 12 11 24 24 H 1.08999 * 109.46793 * 59.99985 * 1 2 3 25 25 H 1.08996 * 109.47476 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47270 * 300.00490 * 1 2 3 27 27 H 1.07998 * 124.41145 * 179.78174 * 7 6 5 28 28 H 1.08005 * 122.45259 * 179.97438 * 8 7 6 29 29 H 1.08001 * 126.61178 * 359.94034 * 11 10 9 30 30 H 1.08997 * 109.46685 * 244.99655 * 13 12 11 31 31 H 1.08999 * 109.47027 * 4.99485 * 13 12 11 32 32 H 0.97008 * 119.99642 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2023 0.0000 4 8 1.3791 2.2229 -0.0005 5 6 3.4569 1.2764 0.0005 6 16 4.5506 -0.0928 0.1438 7 6 5.9165 0.9249 0.0557 8 6 5.5570 2.2051 -0.0767 9 6 4.1955 2.4300 -0.1136 10 7 3.6262 3.7011 -0.2479 11 6 3.9195 4.8103 0.4878 12 6 3.1380 5.8063 0.0196 13 6 3.1174 7.2205 0.5399 14 6 3.3684 8.1776 -0.5968 15 1 3.5274 7.7997 -1.5959 16 6 3.3951 9.5358 -0.3612 17 7 3.6146 10.3711 -1.3530 18 14 3.1208 10.1895 1.3671 19 1 4.4249 10.2932 2.0699 20 1 2.4898 11.5318 1.2943 21 1 2.2298 9.2634 2.1111 22 7 2.3833 5.3358 -0.9742 23 7 2.6398 4.0889 -1.1676 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 6.9388 0.5797 0.1016 28 1 6.2787 3.0053 -0.1492 29 1 4.6383 4.8789 1.2909 30 1 2.1440 7.4303 0.9833 31 1 3.8942 7.3412 1.2949 32 1 3.6338 11.3267 -1.1871 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594646754.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:22 Heat of formation + Delta-G solvation = 38.410492 kcal Electronic energy + Delta-G solvation = -20368.047403 eV Core-core repulsion = 17036.791906 eV Total energy + Delta-G solvation = -3331.255497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.12546 -41.67371 -39.46147 -37.58160 -35.50956 -34.32656 -33.11457 -31.80184 -29.62021 -28.52662 -26.62190 -24.83238 -23.86338 -23.30768 -21.78829 -20.41109 -20.14654 -18.89047 -18.52358 -17.66501 -17.54878 -16.77717 -16.43529 -16.12155 -15.83994 -15.34843 -15.15047 -14.81611 -14.68262 -14.26693 -14.10955 -13.85613 -13.70745 -13.06839 -12.95218 -12.57471 -12.45305 -12.18557 -11.92796 -11.87898 -11.86103 -11.77303 -11.57386 -11.50448 -10.73711 -10.21158 -9.89807 -9.42995 -8.24005 -6.29430 -1.14077 0.07987 0.31125 0.67835 1.01205 1.37560 1.40785 1.45940 1.57357 1.59596 1.67813 1.72298 2.41471 3.09852 3.57280 3.59463 3.79217 3.99674 4.09157 4.21716 4.24139 4.26427 4.41198 4.58661 4.63225 4.81458 4.85751 5.01687 5.19426 5.24716 5.29031 5.58698 5.81271 6.32029 6.54575 6.75099 7.29384 7.32372 8.93827 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.023905 B = 0.003993 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.998878 B = 7010.868742 C = 7708.291501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.349 6.349 3 C 0.525 3.475 4 O -0.517 6.517 5 C -0.317 4.317 6 S 0.395 5.605 7 C -0.182 4.182 8 C -0.169 4.169 9 C 0.192 3.808 10 N -0.319 5.319 11 C 0.029 3.971 12 C -0.024 4.024 13 C 0.066 3.934 14 C -0.519 4.519 15 H 0.018 0.982 16 C 0.004 3.996 17 N -0.955 5.955 18 Si 0.958 3.042 19 H -0.252 1.252 20 H -0.287 1.287 21 H -0.245 1.245 22 N -0.266 5.266 23 N -0.074 5.074 24 H 0.049 0.951 25 H 0.146 0.854 26 H 0.055 0.945 27 H 0.232 0.768 28 H 0.170 0.830 29 H 0.239 0.761 30 H 0.032 0.968 31 H 0.065 0.935 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.363 -29.425 9.984 31.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.266 6.266 3 C 0.371 3.629 4 O -0.408 6.408 5 C -0.438 4.438 6 S 0.664 5.336 7 C -0.321 4.321 8 C -0.199 4.199 9 C 0.082 3.918 10 N -0.104 5.104 11 C -0.120 4.120 12 C -0.160 4.160 13 C 0.027 3.973 14 C -0.557 4.557 15 H 0.037 0.963 16 C -0.192 4.192 17 N -0.595 5.595 18 Si 0.780 3.220 19 H -0.176 1.176 20 H -0.213 1.213 21 H -0.169 1.169 22 N -0.137 5.137 23 N -0.050 5.050 24 H 0.068 0.932 25 H 0.163 0.837 26 H 0.073 0.927 27 H 0.248 0.752 28 H 0.188 0.812 29 H 0.255 0.745 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.036 -31.017 8.924 32.666 hybrid contribution 0.088 2.981 0.433 3.014 sum 5.124 -28.036 9.358 29.997 Atomic orbital electron populations 1.23170 0.75037 1.06003 1.01956 1.86119 1.24990 1.30899 1.84613 1.18700 0.88153 0.82249 0.73819 1.91058 1.67044 1.36752 1.45903 1.22818 0.95988 1.00998 1.23952 1.82940 0.88772 1.01464 1.60462 1.25928 1.08123 0.96215 1.01848 1.19889 0.91675 1.00319 1.07995 1.17322 0.92667 0.80669 1.01124 1.47386 1.29427 1.07566 1.26050 1.23794 1.03278 0.84405 1.00502 1.22109 0.98096 0.99073 0.96686 1.18050 0.98278 0.85186 0.95787 1.21115 1.48725 0.91492 0.94394 0.96326 1.26056 0.93982 0.96733 1.02457 1.70091 1.51618 1.03308 1.34507 0.85550 0.80061 0.77654 0.78712 1.17596 1.21293 1.16882 1.74216 1.20972 1.02819 1.15646 1.82042 1.04798 1.06156 1.12035 0.93189 0.83660 0.92651 0.75155 0.81224 0.74482 0.95034 0.91659 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.45 113.37 1.18 1.77 16 2 O -0.35 -8.07 10.24 -58.60 -0.60 -8.67 16 3 C 0.53 15.95 7.72 68.68 0.53 16.48 16 4 O -0.52 -20.91 13.84 19.24 0.27 -20.65 16 5 C -0.32 -7.83 6.29 22.94 0.14 -7.69 16 6 S 0.40 4.25 22.83 -56.49 -1.29 2.96 16 7 C -0.18 -1.51 10.90 66.77 0.73 -0.78 16 8 C -0.17 -2.86 10.01 21.18 0.21 -2.64 16 9 C 0.19 5.26 6.30 37.61 0.24 5.50 16 10 N -0.32 -12.07 3.18 -189.07 -0.60 -12.67 16 11 C 0.03 1.07 11.35 83.25 0.94 2.02 16 12 C -0.02 -1.13 6.31 41.58 0.26 -0.87 16 13 C 0.07 3.30 4.60 29.10 0.13 3.43 16 14 C -0.52 -31.99 9.62 25.60 0.25 -31.74 16 15 H 0.02 1.31 7.98 -2.91 -0.02 1.29 16 16 C 0.00 0.23 5.47 84.66 0.46 0.70 16 17 N -0.95 -62.28 13.96 21.45 0.30 -61.98 16 18 Si 0.96 44.37 27.47 68.60 1.88 46.26 16 19 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 22 N -0.27 -14.26 12.29 -49.02 -0.60 -14.86 16 23 N -0.07 -3.54 11.64 37.02 0.43 -3.11 16 24 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 25 H 0.15 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 27 H 0.23 -0.24 8.06 -2.91 -0.02 -0.27 16 28 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 29 H 0.24 5.83 8.06 -2.91 -0.02 5.80 16 30 H 0.03 1.60 7.20 -2.39 -0.02 1.58 16 31 H 0.07 2.79 7.53 -2.39 -0.02 2.77 16 32 H 0.27 16.09 8.31 -92.70 -0.77 15.32 16 Total: -1.00 -92.43 304.79 5.98 -86.45 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: 1.11 Total: 0.09 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 5.09 Total: -13.81 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -0.47 Total: -92.63 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.33 Total: -29.32 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.26 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.29 Total: 2.96 kcal Total: -92.43 5.98 -86.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594646754.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.858 kcal (2) G-P(sol) polarization free energy of solvation -92.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds