Wall clock time and date at job start Tue Mar 31 2020 06:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00103 * 2 1 4 4 H 1.48500 * 109.46942 * 84.59070 * 3 2 1 5 5 H 1.48495 * 109.47394 * 204.59179 * 3 2 1 6 6 H 1.48505 * 109.47153 * 324.59165 * 3 2 1 7 7 C 1.38808 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00405 * 22.19074 * 7 2 1 9 9 N 1.36940 * 119.99935 * 202.19532 * 7 2 1 10 10 C 1.46508 * 119.99767 * 35.72905 * 9 7 2 11 11 C 1.50697 * 109.47126 * 89.99938 * 10 9 7 12 12 N 1.29416 * 125.69474 * 90.02670 * 11 10 9 13 13 N 1.26396 * 116.47240 * 179.97438 * 12 11 10 14 14 C 1.29416 * 116.47878 * 359.97438 * 13 12 11 15 15 C 1.50705 * 125.69809 * 180.02562 * 14 13 12 16 16 F 1.39900 * 109.46710 * 4.97713 * 15 14 13 17 17 F 1.39891 * 109.46703 * 124.97673 * 15 14 13 18 18 F 1.39905 * 109.46841 * 244.97849 * 15 14 13 19 19 S 1.71220 * 108.60625 * 359.77482 * 14 13 12 20 20 C 1.46492 * 120.00265 * 215.72792 * 9 7 2 21 21 C 1.53007 * 117.49806 * 13.96486 * 20 9 7 22 22 C 1.53010 * 117.49663 * 305.30628 * 20 9 7 23 23 H 0.96996 * 119.99997 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.46727 * 210.00181 * 10 9 7 25 25 H 1.08997 * 109.46696 * 329.99498 * 10 9 7 26 26 H 1.08997 * 115.55281 * 159.64275 * 20 9 7 27 27 H 1.09000 * 117.49519 * 0.02562 * 21 20 9 28 28 H 1.09000 * 117.49569 * 145.02042 * 21 20 9 29 29 H 1.08999 * 117.49847 * 214.97955 * 22 20 9 30 30 H 1.08999 * 117.49600 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3834 2.1124 1.3939 5 1 3.6002 1.4099 -0.5826 6 1 1.5095 2.6170 -0.8112 7 6 2.0102 -1.2021 -0.0005 8 1 1.5303 -2.1026 -0.3542 9 7 3.3035 -1.2463 0.4475 10 6 3.7199 -0.3993 1.5681 11 6 3.5119 -1.1414 2.8630 12 7 4.3816 -1.9028 3.4451 13 7 4.0219 -2.4418 4.5303 14 6 2.8240 -2.1720 4.9393 15 6 2.1854 -2.6984 6.1987 16 9 3.1255 -3.4381 6.9241 17 9 1.7350 -1.6263 6.9763 18 9 1.1030 -3.5195 5.8647 19 16 2.0884 -1.1117 3.8140 20 6 4.2707 -2.1404 -0.1937 21 6 3.8838 -2.7486 -1.5433 22 6 3.9073 -3.6237 -0.2875 23 1 -0.4850 0.8400 0.0004 24 1 4.7744 -0.1460 1.4597 25 1 3.1255 0.5143 1.5733 26 1 5.3196 -1.8881 -0.0375 27 1 2.9097 -2.4832 -1.9542 28 1 4.6782 -2.8968 -2.2748 29 1 4.7172 -4.3472 -0.1934 30 1 2.9488 -3.9343 0.1283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595302963.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:24 Heat of formation + Delta-G solvation = -24.190283 kcal Electronic energy + Delta-G solvation = -21426.075570 eV Core-core repulsion = 17550.248759 eV Total energy + Delta-G solvation = -3875.826810 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.050 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.17297 -47.71785 -47.64679 -40.97148 -37.63768 -34.32541 -32.52078 -31.25755 -28.62120 -25.94629 -24.68571 -23.78492 -21.62862 -20.55875 -20.12947 -19.51857 -18.59400 -17.96741 -17.79742 -16.77124 -15.87816 -15.66190 -15.09725 -14.52406 -14.45240 -14.32816 -14.09805 -13.85973 -13.81137 -13.80432 -13.10431 -12.89541 -12.79375 -12.67004 -12.22493 -11.25823 -11.20405 -10.86458 -10.60990 -10.38299 -10.23619 -10.03218 -9.92072 -9.82900 -9.57180 -9.29893 -8.92252 -7.27586 -6.49123 -3.83934 0.42023 1.05390 1.66616 2.49760 2.69000 2.95792 3.18501 3.21130 3.50123 4.06817 4.13194 4.28680 4.37789 4.56077 4.70103 4.92435 5.18742 5.53389 5.59964 5.73473 5.81861 5.84046 5.95315 6.27322 6.29994 6.69008 6.91392 7.50319 7.92143 8.44142 8.72633 9.15522 9.51752 10.62603 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.018824 B = 0.006177 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.069337 B = 4531.825258 C = 5191.856367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.044 3.956 3 Si 0.863 3.137 4 H -0.277 1.277 5 H -0.258 1.258 6 H -0.288 1.288 7 C -0.271 4.271 8 H 0.092 0.908 9 N -0.546 5.546 10 C 0.199 3.801 11 C 0.004 3.996 12 N -0.271 5.271 13 N -0.197 5.197 14 C -0.200 4.200 15 C 0.567 3.433 16 F -0.159 7.159 17 F -0.167 7.167 18 F -0.165 7.165 19 S 0.271 5.729 20 C 0.118 3.882 21 C -0.184 4.184 22 C -0.213 4.213 23 H 0.274 0.726 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.025 -0.794 6.578 7.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.162 4.162 3 Si 0.691 3.309 4 H -0.205 1.205 5 H -0.182 1.182 6 H -0.215 1.215 7 C -0.401 4.401 8 H 0.109 0.891 9 N -0.262 5.262 10 C 0.068 3.932 11 C -0.273 4.273 12 N -0.114 5.114 13 N -0.041 5.041 14 C -0.477 4.477 15 C 0.509 3.491 16 F -0.140 7.140 17 F -0.149 7.149 18 F -0.147 7.147 19 S 0.516 5.484 20 C 0.010 3.990 21 C -0.222 4.222 22 C -0.254 4.254 23 H 0.084 0.916 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.091 -0.803 6.605 7.811 hybrid contribution 0.171 0.474 0.202 0.543 sum 4.262 -0.329 6.807 8.038 Atomic orbital electron populations 1.69845 1.06035 1.27933 1.46217 1.25477 0.95192 0.98067 0.97416 0.87127 0.81638 0.84236 0.77873 1.20473 1.18157 1.21529 1.18907 0.86453 0.95326 1.39441 0.89068 1.43901 1.08951 1.46271 1.27033 1.20415 1.01164 0.92414 0.79170 1.31474 0.92494 1.01950 1.01402 1.71515 1.27512 1.09965 1.02449 1.71330 1.10140 1.16054 1.06584 1.28757 0.99824 1.14185 1.04980 1.16592 0.76022 0.75429 0.81099 1.93232 1.64787 1.77271 1.78707 1.93237 1.89498 1.55839 1.76299 1.93261 1.55980 1.73038 1.92380 1.84170 1.17854 1.36784 1.09565 1.21172 0.92172 0.89136 0.96496 1.23196 1.03521 1.04526 0.90955 1.23326 1.02678 0.95926 1.03421 0.91614 0.89269 0.90107 0.87974 0.87627 0.89939 0.90162 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.61 13.97 55.49 0.78 -21.83 16 2 C 0.04 1.08 5.32 -17.43 -0.09 0.99 16 3 Si 0.86 18.62 24.95 -169.99 -4.24 14.38 16 4 H -0.28 -5.66 6.67 56.52 0.38 -5.29 16 5 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.27 -6.48 8.59 -15.06 -0.13 -6.61 16 8 H 0.09 2.41 7.27 -52.49 -0.38 2.03 16 9 N -0.55 -11.48 2.46 -167.02 -0.41 -11.89 16 10 C 0.20 3.87 5.15 -5.19 -0.03 3.84 16 11 C 0.00 0.07 7.11 -13.30 -0.09 -0.02 16 12 N -0.27 -5.43 11.66 32.58 0.38 -5.05 16 13 N -0.20 -3.88 11.41 32.58 0.37 -3.50 16 14 C -0.20 -3.58 6.83 -13.29 -0.09 -3.67 16 15 C 0.57 8.87 3.55 36.01 0.13 9.00 16 16 F -0.16 -2.47 17.13 2.25 0.04 -2.43 16 17 F -0.17 -2.41 17.30 2.25 0.04 -2.37 16 18 F -0.17 -2.56 17.30 2.25 0.04 -2.52 16 19 S 0.27 4.94 23.04 -107.50 -2.48 2.47 16 20 C 0.12 2.19 6.61 -67.93 -0.45 1.74 16 21 C -0.18 -3.18 9.80 -26.69 -0.26 -3.44 16 22 C -0.21 -3.81 10.08 -26.68 -0.27 -4.08 16 23 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 24 H 0.09 1.53 8.04 -51.93 -0.42 1.11 16 25 H 0.08 1.63 3.01 -51.93 -0.16 1.47 16 26 H 0.10 1.70 8.10 -51.93 -0.42 1.28 16 27 H 0.11 2.04 6.90 -51.93 -0.36 1.68 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.09 1.76 8.02 -51.93 -0.42 1.34 16 LS Contribution 289.07 15.07 4.36 4.36 Total: -1.00 -25.38 289.07 -4.57 -29.95 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -2.16 Total: 0.70 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.29 Total: -2.25 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 1.12 Total: -42.28 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 0.12 Total: -7.32 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.24 Total: 14.38 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -2.48 Total: 2.47 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -25.38 -4.57 -29.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595302963.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.762 kcal (2) G-P(sol) polarization free energy of solvation -25.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds