Wall clock time and date at job start Tue Mar 31 2020 06:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99703 * 2 1 4 4 H 1.48511 * 109.47115 * 264.87997 * 3 2 1 5 5 H 1.48499 * 109.47604 * 24.87664 * 3 2 1 6 6 H 1.48496 * 109.47226 * 144.88194 * 3 2 1 7 7 C 1.37875 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99794 * 4.02776 * 7 2 1 9 9 C 1.50697 * 120.00014 * 184.02267 * 7 2 1 10 10 C 1.52998 * 115.55972 * 86.29291 * 9 7 2 11 11 O 1.42901 * 109.47390 * 39.40219 * 10 9 7 12 12 N 1.41604 * 113.99939 * 183.81113 * 11 10 9 13 13 N 1.40272 * 126.76200 * 355.30839 * 12 11 10 14 14 N 1.28632 * 109.43087 * 179.97438 * 13 12 11 15 15 C 1.34825 * 110.32631 * 359.97438 * 14 13 12 16 16 C 1.40124 * 133.06102 * 180.02562 * 15 14 13 17 17 C 1.36378 * 119.95380 * 179.24221 * 16 15 14 18 18 C 1.39037 * 120.74219 * 0.64737 * 17 16 15 19 19 Cl 1.73597 * 119.79539 * 179.59687 * 18 17 16 20 20 C 1.37765 * 120.40942 * 359.56503 * 18 17 16 21 21 C 1.37468 * 126.75116 * 174.98750 * 12 11 10 22 22 C 1.53001 * 117.50242 * 300.60145 * 9 7 2 23 23 C 1.52997 * 60.03148 * 252.49680 * 22 9 7 24 24 H 0.96992 * 120.00302 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47503 * 159.40735 * 10 9 7 26 26 H 1.09002 * 109.47036 * 279.40170 * 10 9 7 27 27 H 1.07999 * 120.02548 * 359.96290 * 16 15 14 28 28 H 1.07995 * 119.62338 * 180.21773 * 17 16 15 29 29 H 1.07998 * 120.15828 * 179.97438 * 20 18 17 30 30 H 1.08999 * 117.49704 * 359.97438 * 22 9 7 31 31 H 1.09005 * 117.49766 * 144.99711 * 22 9 7 32 32 H 1.09002 * 117.50019 * 107.49787 * 23 22 9 33 33 H 1.09001 * 117.50152 * 252.52168 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6048 1.9840 -1.3946 5 1 1.3966 2.6816 0.5889 6 1 3.4883 1.4739 0.8054 7 6 2.0046 -1.1940 0.0005 8 1 1.4666 -2.1282 -0.0647 9 6 3.5088 -1.1955 0.0921 10 6 4.0839 -1.1547 1.5093 11 8 3.2959 -1.9823 2.3672 12 7 3.6942 -1.9478 3.7256 13 7 4.8041 -1.2754 4.2582 14 7 4.8513 -1.4674 5.5293 15 6 3.8237 -2.2461 5.9238 16 6 3.4234 -2.7422 7.1716 17 6 2.3031 -3.5136 7.2702 18 6 1.5550 -3.8279 6.1411 19 17 0.1390 -4.8205 6.2934 20 6 1.9302 -3.3560 4.9024 21 6 3.0658 -2.5618 4.7829 22 6 4.2842 -0.4653 -1.0063 23 6 4.2806 -1.9946 -0.9609 24 1 -0.4850 0.8400 -0.0004 25 1 5.1109 -1.5196 1.4953 26 1 4.0677 -0.1292 1.8785 27 1 3.9951 -2.5042 8.0565 28 1 1.9975 -3.8902 8.2351 29 1 1.3464 -3.6030 4.0281 30 1 3.7063 0.0158 -1.7954 31 1 5.2039 0.0445 -0.7192 32 1 3.7003 -2.5193 -1.7200 33 1 5.1977 -2.4909 -0.6436 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596238448.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:41 Heat of formation + Delta-G solvation = 149.681411 kcal Electronic energy + Delta-G solvation = -20564.922544 eV Core-core repulsion = 17236.448410 eV Total energy + Delta-G solvation = -3328.474134 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.99229 -38.23347 -37.82162 -36.36264 -36.08126 -32.62797 -32.26151 -30.22914 -29.79940 -27.02597 -25.47520 -24.04955 -22.77775 -21.95164 -21.72145 -19.35962 -18.46861 -17.99638 -16.52933 -16.27781 -16.11436 -15.43316 -15.21851 -14.67612 -14.27982 -14.14514 -13.51557 -13.19260 -12.93034 -12.85761 -12.72804 -12.56414 -11.89678 -11.75075 -11.30751 -11.24976 -11.23896 -10.92806 -10.81758 -10.65610 -10.43735 -10.07469 -9.80885 -9.31943 -8.84455 -8.76462 -8.71228 -8.29147 -6.26298 -4.31600 0.29950 1.05787 1.15674 1.91950 2.09688 3.15990 3.26126 3.27280 3.38739 3.71062 4.25989 4.27635 4.47336 4.66164 4.75270 4.81810 4.97340 5.12974 5.24136 5.44963 5.64302 5.65263 5.77794 5.85115 5.86969 5.95918 6.01763 6.08532 6.24677 6.33887 6.44348 6.65314 6.88231 7.15181 7.50823 7.95275 8.31160 8.76757 9.34641 10.85069 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.004832 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.613027 B = 5793.596267 C = 6482.181484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.082 3.918 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.490 4.490 8 H 0.082 0.918 9 C -0.001 4.001 10 C 0.066 3.934 11 O -0.068 6.068 12 N -0.247 5.247 13 N -0.008 5.008 14 N -0.218 5.218 15 C -0.011 4.011 16 C -0.025 4.025 17 C -0.125 4.125 18 C 0.003 3.997 19 Cl -0.054 7.054 20 C -0.090 4.090 21 C 0.117 3.883 22 C -0.186 4.186 23 C -0.174 4.174 24 H 0.267 0.733 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.146 0.854 29 H 0.152 0.848 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.456 -6.506 12.491 15.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.122 4.122 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.188 1.188 7 C -0.527 4.527 8 H 0.100 0.900 9 C -0.004 4.004 10 C -0.011 4.011 11 O -0.056 6.056 12 N -0.084 5.084 13 N 0.005 4.995 14 N -0.098 5.098 15 C -0.138 4.138 16 C -0.047 4.047 17 C -0.147 4.147 18 C -0.028 4.028 19 Cl -0.025 7.025 20 C -0.113 4.113 21 C -0.006 4.006 22 C -0.223 4.223 23 C -0.211 4.211 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.166 0.834 28 H 0.164 0.836 29 H 0.169 0.831 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.122 -5.703 11.836 14.495 hybrid contribution -0.529 0.488 -0.331 0.792 sum 5.592 -5.215 11.505 13.815 Atomic orbital electron populations 1.69869 1.06280 1.27400 1.48813 1.24977 0.94645 0.98958 0.93594 0.86939 0.80171 0.83521 0.78932 1.19813 1.21789 1.18835 1.20136 0.85742 0.94901 1.51950 0.89974 1.19225 0.95703 1.01918 0.83539 1.23184 0.93122 0.94240 0.90555 1.90988 1.51369 1.67455 0.95773 1.52423 1.19032 1.36679 1.00280 1.81819 1.01997 1.12992 1.02719 1.74624 1.18491 1.13542 1.03159 1.19650 0.95632 1.04153 0.94387 1.20001 0.95406 0.94885 0.94455 1.20556 0.95247 1.00841 0.98100 1.20586 0.91037 0.97174 0.93980 1.98389 1.38268 1.67780 1.98084 1.20014 0.95215 0.97951 0.98088 1.18634 0.96902 0.99164 0.85949 1.23053 1.01304 0.95132 1.02805 1.22993 1.01112 0.93117 1.03852 0.92261 0.92545 0.91082 0.83374 0.83611 0.83058 0.88429 0.90382 0.88793 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 2 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 3 Si 0.88 21.05 24.90 -169.99 -4.23 16.82 16 4 H -0.27 -6.28 7.03 56.52 0.40 -5.89 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.26 -6.04 5.67 56.52 0.32 -5.72 16 7 C -0.49 -13.16 8.82 -34.44 -0.30 -13.47 16 8 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 9 C 0.00 -0.03 1.26 -155.62 -0.20 -0.22 16 10 C 0.07 1.39 5.69 37.16 0.21 1.60 16 11 O -0.07 -1.48 11.06 -11.47 -0.13 -1.61 16 12 N -0.25 -4.86 5.02 32.35 0.16 -4.70 16 13 N -0.01 -0.16 12.99 60.35 0.78 0.62 16 14 N -0.22 -3.73 12.36 32.08 0.40 -3.33 16 15 C -0.01 -0.17 7.25 -84.97 -0.62 -0.78 16 16 C -0.03 -0.28 10.05 -39.54 -0.40 -0.67 16 17 C -0.13 -1.24 9.73 -39.96 -0.39 -1.63 16 18 C 0.00 0.04 6.32 -39.46 -0.25 -0.21 16 19 Cl -0.05 -0.60 28.94 -51.86 -1.50 -2.10 16 20 C -0.09 -1.34 9.85 -39.44 -0.39 -1.73 16 21 C 0.12 1.99 7.24 -84.15 -0.61 1.38 16 22 C -0.19 -3.67 7.55 -26.73 -0.20 -3.87 16 23 C -0.17 -3.30 9.88 -26.70 -0.26 -3.57 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.06 1.05 7.94 -51.93 -0.41 0.64 16 26 H 0.07 1.55 6.61 -51.93 -0.34 1.21 16 27 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 28 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.15 2.32 8.06 -52.49 -0.42 1.90 16 30 H 0.10 2.01 6.96 -51.93 -0.36 1.65 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 33 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 LS Contribution 304.57 15.07 4.59 4.59 Total: -1.00 -29.57 304.57 -5.95 -35.52 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -3.29 Total: 0.64 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -3.50 Total: -21.00 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 2.12 Total: -32.86 kcal Atomic # 8 Polarization: -1.48 SS G_CDS: -0.13 Total: -1.61 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.23 Total: 16.82 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.57 -5.95 -35.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596238448.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.197 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds