Wall clock time and date at job start Tue Mar 31 2020 06:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99703 * 2 1 4 4 H 1.48511 * 109.47115 * 264.87997 * 3 2 1 5 5 H 1.48499 * 109.47604 * 24.87664 * 3 2 1 6 6 H 1.48496 * 109.47226 * 144.88194 * 3 2 1 7 7 C 1.37875 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99794 * 4.02776 * 7 2 1 9 9 C 1.50697 * 120.00014 * 184.02267 * 7 2 1 10 10 C 1.52998 * 115.55972 * 86.29291 * 9 7 2 11 11 O 1.42901 * 109.47390 * 39.40219 * 10 9 7 12 12 N 1.41604 * 113.99939 * 183.81113 * 11 10 9 13 13 N 1.40272 * 126.76200 * 355.30839 * 12 11 10 14 14 N 1.28632 * 109.43087 * 179.97438 * 13 12 11 15 15 C 1.34825 * 110.32631 * 359.97438 * 14 13 12 16 16 C 1.40124 * 133.06102 * 180.02562 * 15 14 13 17 17 C 1.36378 * 119.95380 * 179.24221 * 16 15 14 18 18 C 1.39037 * 120.74219 * 0.64737 * 17 16 15 19 19 Cl 1.73597 * 119.79539 * 179.59687 * 18 17 16 20 20 C 1.37765 * 120.40942 * 359.56503 * 18 17 16 21 21 C 1.37468 * 126.75116 * 174.98750 * 12 11 10 22 22 C 1.53001 * 117.50242 * 300.60145 * 9 7 2 23 23 C 1.52997 * 60.03148 * 252.49680 * 22 9 7 24 24 H 0.96992 * 120.00302 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47503 * 159.40735 * 10 9 7 26 26 H 1.09002 * 109.47036 * 279.40170 * 10 9 7 27 27 H 1.07999 * 120.02548 * 359.96290 * 16 15 14 28 28 H 1.07995 * 119.62338 * 180.21773 * 17 16 15 29 29 H 1.07998 * 120.15828 * 179.97438 * 20 18 17 30 30 H 1.08999 * 117.49704 * 359.97438 * 22 9 7 31 31 H 1.09005 * 117.49766 * 144.99711 * 22 9 7 32 32 H 1.09002 * 117.50019 * 107.49787 * 23 22 9 33 33 H 1.09001 * 117.50152 * 252.52168 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6048 1.9840 -1.3946 5 1 1.3966 2.6816 0.5889 6 1 3.4883 1.4739 0.8054 7 6 2.0046 -1.1940 0.0005 8 1 1.4666 -2.1282 -0.0647 9 6 3.5088 -1.1955 0.0921 10 6 4.0839 -1.1547 1.5093 11 8 3.2959 -1.9823 2.3672 12 7 3.6942 -1.9478 3.7256 13 7 4.8041 -1.2754 4.2582 14 7 4.8513 -1.4674 5.5293 15 6 3.8237 -2.2461 5.9238 16 6 3.4234 -2.7422 7.1716 17 6 2.3031 -3.5136 7.2702 18 6 1.5550 -3.8279 6.1411 19 17 0.1390 -4.8205 6.2934 20 6 1.9302 -3.3560 4.9024 21 6 3.0658 -2.5618 4.7829 22 6 4.2842 -0.4653 -1.0063 23 6 4.2806 -1.9946 -0.9609 24 1 -0.4850 0.8400 -0.0004 25 1 5.1109 -1.5196 1.4953 26 1 4.0677 -0.1292 1.8785 27 1 3.9951 -2.5042 8.0565 28 1 1.9975 -3.8902 8.2351 29 1 1.3464 -3.6030 4.0281 30 1 3.7063 0.0158 -1.7954 31 1 5.2039 0.0445 -0.7192 32 1 3.7003 -2.5193 -1.7200 33 1 5.1977 -2.4909 -0.6436 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596238448.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:40 Heat of formation + Delta-G solvation = 130.874581 kcal Electronic energy + Delta-G solvation = -20565.738069 eV Core-core repulsion = 17236.448410 eV Total energy + Delta-G solvation = -3329.289659 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.22446 -39.69759 -39.03537 -37.74059 -37.27649 -34.36220 -33.85805 -31.37120 -30.96432 -28.68514 -27.42104 -25.21504 -23.93380 -23.46897 -23.02844 -21.14503 -19.76586 -19.22470 -18.37890 -17.73598 -17.12517 -16.99323 -16.58075 -16.19974 -15.90057 -15.26273 -14.98555 -14.85696 -14.41856 -14.22379 -13.93185 -13.76398 -13.43499 -13.17997 -12.98601 -12.62279 -12.31325 -12.30109 -12.28433 -12.14671 -11.93177 -11.72402 -11.48731 -11.13007 -10.75279 -10.45381 -9.96401 -9.46851 -8.39405 -6.48034 -0.85418 -0.32982 0.09930 0.85758 0.89561 1.26255 1.29276 1.38121 2.25801 2.34086 2.42094 2.92589 2.94195 3.15256 3.36922 3.60322 3.81539 3.86045 3.97469 4.03642 4.17576 4.23700 4.26397 4.48712 4.65722 4.74091 4.76085 4.85344 4.99889 5.02951 5.07081 5.35831 5.41365 5.52479 5.69907 6.17957 6.59504 6.65585 7.21449 8.76041 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.004832 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.613027 B = 5793.596267 C = 6482.181484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.252 1.252 5 H -0.300 1.300 6 H -0.244 1.244 7 C -0.485 4.485 8 H 0.033 0.967 9 C -0.039 4.039 10 C 0.077 3.923 11 O -0.098 6.098 12 N -0.268 5.268 13 N -0.035 5.035 14 N -0.213 5.213 15 C -0.020 4.020 16 C -0.007 4.007 17 C -0.110 4.110 18 C 0.023 3.977 19 Cl -0.041 7.041 20 C -0.125 4.125 21 C 0.095 3.905 22 C -0.173 4.173 23 C -0.154 4.154 24 H 0.267 0.733 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.192 0.808 28 H 0.192 0.808 29 H 0.132 0.868 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.544 -6.600 14.913 17.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.173 4.173 3 Si 0.757 3.243 4 H -0.176 1.176 5 H -0.227 1.227 6 H -0.167 1.167 7 C -0.523 4.523 8 H 0.051 0.949 9 C -0.041 4.041 10 C 0.000 4.000 11 O -0.088 6.088 12 N -0.106 5.106 13 N -0.021 5.021 14 N -0.093 5.093 15 C -0.148 4.148 16 C -0.029 4.029 17 C -0.131 4.131 18 C -0.008 4.008 19 Cl -0.012 7.012 20 C -0.148 4.148 21 C -0.027 4.027 22 C -0.210 4.210 23 C -0.191 4.191 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.076 0.924 27 H 0.209 0.791 28 H 0.210 0.790 29 H 0.150 0.850 30 H 0.106 0.894 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.240 -5.817 14.256 17.463 hybrid contribution -1.302 0.289 -0.883 1.599 sum 6.938 -5.528 13.373 16.048 Atomic orbital electron populations 1.70025 1.08237 1.28190 1.51549 1.25807 0.95264 1.02718 0.93474 0.86024 0.79420 0.78667 0.80197 1.17616 1.22698 1.16738 1.20230 0.88645 0.92863 1.50537 0.94913 1.19172 0.93273 1.06225 0.85449 1.22994 0.94012 0.93654 0.89291 1.90914 1.52432 1.67813 0.97607 1.52463 1.20229 1.38537 0.99325 1.81780 1.02522 1.14343 1.03410 1.74538 1.18816 1.13342 1.02627 1.20172 0.94968 1.04282 0.95342 1.20572 0.95356 0.93054 0.93895 1.21066 0.93865 0.99267 0.98907 1.20851 0.90906 0.95430 0.93645 1.98405 1.37603 1.67197 1.97955 1.19981 0.95685 1.00149 0.98999 1.19147 0.97847 0.99668 0.86002 1.23125 1.01557 0.95777 1.00537 1.23054 1.01332 0.93167 1.01574 0.92407 0.90068 0.92398 0.79078 0.79037 0.84983 0.89352 0.87105 0.89440 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.58 13.96 21.45 0.30 -58.28 16 2 C 0.03 1.49 5.47 84.65 0.46 1.96 16 3 Si 0.93 43.77 24.90 68.60 1.71 45.48 16 4 H -0.25 -10.90 7.03 99.48 0.70 -10.20 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 6 H -0.24 -10.59 5.67 99.48 0.56 -10.02 16 7 C -0.49 -27.29 8.82 25.60 0.23 -27.06 16 8 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 9 C -0.04 -1.72 1.26 -52.90 -0.07 -1.79 16 10 C 0.08 3.24 5.69 71.98 0.41 3.65 16 11 O -0.10 -4.49 11.06 -38.79 -0.43 -4.92 16 12 N -0.27 -10.83 5.02 -51.57 -0.26 -11.09 16 13 N -0.03 -1.31 12.99 37.02 0.48 -0.83 16 14 N -0.21 -7.06 12.36 -52.43 -0.65 -7.70 16 15 C -0.02 -0.59 7.25 39.71 0.29 -0.30 16 16 C -0.01 -0.12 10.05 22.29 0.22 0.10 16 17 C -0.11 -1.71 9.73 22.03 0.21 -1.49 16 18 C 0.02 0.51 6.32 22.35 0.14 0.65 16 19 Cl -0.04 -0.83 28.94 -2.72 -0.08 -0.91 16 20 C -0.13 -3.81 9.85 22.36 0.22 -3.59 16 21 C 0.09 3.29 7.24 39.03 0.28 3.57 16 22 C -0.17 -6.45 7.55 30.59 0.23 -6.21 16 23 C -0.15 -5.63 9.88 30.62 0.30 -5.33 16 24 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 25 H 0.08 2.93 7.94 -2.39 -0.02 2.91 16 26 H 0.06 2.52 6.61 -2.39 -0.02 2.50 16 27 H 0.19 1.81 8.06 -2.91 -0.02 1.78 16 28 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 29 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 30 H 0.09 3.47 6.96 -2.39 -0.02 3.45 16 31 H 0.11 3.44 8.14 -2.38 -0.02 3.42 16 32 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.11 3.29 8.08 -2.39 -0.02 3.28 16 Total: -1.00 -69.73 304.57 5.01 -64.73 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.00 Total: 9.38 kcal Atomic # 6 Polarization: -38.79 SS G_CDS: 2.94 Total: -35.86 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -0.13 Total: -77.90 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.43 Total: -4.92 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.71 Total: 45.48 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -69.73 5.01 -64.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596238448.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.602 kcal (2) G-P(sol) polarization free energy of solvation -69.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds