Wall clock time and date at job start Tue Mar 31 2020 07:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00062 * 2 1 4 4 H 1.48505 * 109.46925 * 270.00056 * 3 2 1 5 5 H 1.48497 * 109.47086 * 30.00119 * 3 2 1 6 6 H 1.48504 * 109.46922 * 150.00347 * 3 2 1 7 7 C 1.37881 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47313 * 180.02562 * 9 7 2 11 11 S 1.81394 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.81399 * 102.99894 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47445 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47353 * 179.97438 * 13 12 11 15 15 N 1.28727 * 121.08258 * 90.02580 * 14 13 12 16 16 S 1.69387 * 108.98438 * 180.02562 * 15 14 13 17 17 C 1.76505 * 96.12208 * 0.02562 * 16 15 14 18 18 C 1.38790 * 133.55963 * 180.02562 * 17 16 15 19 19 C 1.36711 * 119.75631 * 179.97438 * 18 17 16 20 20 C 1.38964 * 120.15513 * 0.02562 * 19 18 17 21 21 C 1.36039 * 121.15952 * 359.97438 * 20 19 18 22 22 C 1.40810 * 105.51927 * 359.74427 * 17 16 15 23 23 H 0.96993 * 120.00062 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46568 * 60.00375 * 9 7 2 25 25 H 1.09002 * 109.46992 * 300.00727 * 9 7 2 26 26 H 1.09002 * 109.46725 * 60.00168 * 10 9 7 27 27 H 1.08998 * 109.46794 * 299.99993 * 10 9 7 28 28 H 1.09001 * 109.47190 * 299.99732 * 12 11 10 29 29 H 1.09004 * 109.47089 * 59.99865 * 12 11 10 30 30 H 1.09001 * 109.46962 * 300.00183 * 13 12 11 31 31 H 1.09004 * 109.46832 * 60.00020 * 13 12 11 32 32 H 1.08003 * 120.11887 * 359.94904 * 18 17 16 33 33 H 1.08008 * 119.92016 * 179.97438 * 19 18 17 34 34 H 1.08003 * 119.41946 * 180.02562 * 20 19 18 35 35 H 1.08000 * 119.89479 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 16 1.3383 -5.2330 -0.0013 12 6 2.6649 -6.4702 -0.0020 13 6 2.0541 -7.8731 -0.0020 14 6 3.1563 -8.9008 -0.0033 15 7 3.6428 -9.3548 1.0987 16 16 4.8544 -10.4836 0.7423 17 6 4.7200 -10.3563 -1.0130 18 6 5.3786 -10.9694 -2.0697 19 6 5.0399 -10.6528 -3.3557 20 6 4.0404 -9.7201 -3.6049 21 6 3.3808 -9.1060 -2.5859 22 6 3.7001 -9.4137 -1.2453 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8895 27 1 2.8719 -3.6044 -0.8905 28 1 3.2810 -6.3418 -0.8920 29 1 3.2811 -6.3427 0.8880 30 1 1.4383 -8.0012 0.8881 31 1 1.4377 -8.0009 -0.8919 32 1 6.1561 -11.6938 -1.8766 33 1 5.5510 -11.1280 -4.1800 34 1 3.7821 -9.4792 -4.6255 35 1 2.6070 -8.3845 -2.8029 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596382443.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:44 Heat of formation + Delta-G solvation = 27.651584 kcal Electronic energy + Delta-G solvation = -17208.338410 eV Core-core repulsion = 14422.909586 eV Total energy + Delta-G solvation = -2785.428824 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.060 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.30383 -37.35378 -33.69524 -32.87301 -31.34958 -30.87355 -30.78546 -25.73535 -24.99916 -23.53761 -22.92344 -21.10963 -20.08568 -18.83852 -16.71720 -16.52486 -16.08747 -15.64718 -15.38894 -14.88757 -14.67415 -14.51471 -14.19263 -14.06195 -13.49178 -13.02001 -12.78808 -12.50552 -12.23276 -11.98320 -11.80662 -11.50280 -11.44231 -11.05508 -11.01061 -10.75797 -10.54721 -10.20293 -10.15962 -9.67667 -9.51597 -9.33730 -9.08537 -8.42897 -8.18002 -7.18655 -6.06870 -4.11455 0.15665 0.80244 1.11742 1.49983 1.74498 2.20192 3.18502 3.23828 3.28648 3.35207 3.38500 3.95711 4.18234 4.41245 4.50756 4.74353 4.82724 4.89813 4.91991 5.05897 5.09928 5.28769 5.45846 5.47008 5.51463 5.72949 5.81831 5.90388 5.97951 6.01227 6.17006 6.30244 6.42473 6.71173 7.55567 7.64176 7.89429 8.26549 8.93529 9.52514 11.03968 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.025863 B = 0.002663 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.363692 B =10510.188879 C =10841.933439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.057 4.057 11 S -0.278 6.278 12 C -0.085 4.085 13 C -0.037 4.037 14 C 0.168 3.832 15 N -0.434 5.434 16 S 0.175 5.825 17 C -0.134 4.134 18 C -0.085 4.085 19 C -0.081 4.081 20 C -0.125 4.125 21 C -0.046 4.046 22 C -0.129 4.129 23 H 0.263 0.737 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.521 -24.005 -6.416 26.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.205 4.205 11 S -0.051 6.051 12 C -0.235 4.235 13 C -0.080 4.080 14 C -0.023 4.023 15 N -0.245 5.245 16 S 0.330 5.670 17 C -0.254 4.254 18 C -0.107 4.107 19 C -0.104 4.104 20 C -0.145 4.145 21 C -0.068 4.068 22 C -0.141 4.141 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.923 -24.689 -4.142 26.577 hybrid contribution 1.306 1.627 -1.536 2.591 sum 10.229 -23.062 -5.678 25.860 Atomic orbital electron populations 1.69967 1.06070 1.26892 1.49980 1.25010 0.94898 0.99301 0.95032 0.86522 0.79781 0.83110 0.78176 1.20541 1.21079 1.19816 1.21097 0.93007 0.90274 1.51803 0.92470 1.18907 0.93390 0.89208 0.98591 1.23698 1.01380 0.92223 1.03218 1.86875 1.16702 1.03373 1.98103 1.23177 1.00257 0.95000 1.05043 1.20214 0.93322 0.88803 1.05710 1.22585 0.96759 0.95999 0.86999 1.75840 1.10486 1.11941 1.26187 1.84881 1.40683 1.45455 0.95972 1.23537 1.00601 1.01455 0.99840 1.19992 0.99916 1.00137 0.90691 1.21087 0.96426 0.96524 0.96322 1.20819 0.96777 0.97240 0.99673 1.20817 0.98595 0.97924 0.89453 1.20222 0.98953 1.00068 0.94859 0.92757 0.95479 0.95477 0.91331 0.91331 0.90253 0.90113 0.88300 0.88371 0.84942 0.84699 0.84790 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.98 4.98 -27.88 -0.14 0.84 16 10 C -0.06 -1.19 5.88 37.16 0.22 -0.98 16 11 S -0.28 -4.97 21.74 -107.50 -2.34 -7.31 16 12 C -0.08 -1.17 5.92 37.16 0.22 -0.95 16 13 C -0.04 -0.44 5.50 -27.88 -0.15 -0.59 16 14 C 0.17 2.05 6.13 -81.23 -0.50 1.56 16 15 N -0.43 -5.89 11.84 34.00 0.40 -5.49 16 16 S 0.17 1.99 23.86 -107.50 -2.56 -0.57 16 17 C -0.13 -1.41 6.71 -38.41 -0.26 -1.67 16 18 C -0.08 -0.67 10.02 -39.93 -0.40 -1.07 16 19 C -0.08 -0.53 10.00 -39.86 -0.40 -0.93 16 20 C -0.12 -0.88 9.92 -40.10 -0.40 -1.28 16 21 C -0.05 -0.40 9.72 -39.25 -0.38 -0.79 16 22 C -0.13 -1.42 6.04 -105.14 -0.64 -2.05 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.40 8.14 -51.92 -0.42 0.97 16 27 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 28 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 29 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 30 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.10 0.99 7.54 -51.93 -0.39 0.60 16 32 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 33 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 34 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 35 H 0.14 1.02 7.64 -52.49 -0.40 0.62 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -31.28 329.38 -11.62 -42.90 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -4.56 Total: -3.79 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -3.23 Total: -21.22 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 1.14 Total: -31.34 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -4.90 Total: -7.88 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.28 -11.62 -42.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596382443.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.552 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds