Wall clock time and date at job start Tue Mar 31 2020 07:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00062 * 2 1 4 4 H 1.48505 * 109.46925 * 270.00056 * 3 2 1 5 5 H 1.48497 * 109.47086 * 30.00119 * 3 2 1 6 6 H 1.48504 * 109.46922 * 150.00347 * 3 2 1 7 7 C 1.37881 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47313 * 180.02562 * 9 7 2 11 11 S 1.81394 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.81399 * 102.99894 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47445 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47353 * 179.97438 * 13 12 11 15 15 N 1.28727 * 121.08258 * 90.02580 * 14 13 12 16 16 S 1.69387 * 108.98438 * 180.02562 * 15 14 13 17 17 C 1.76505 * 96.12208 * 0.02562 * 16 15 14 18 18 C 1.38790 * 133.55963 * 180.02562 * 17 16 15 19 19 C 1.36711 * 119.75631 * 179.97438 * 18 17 16 20 20 C 1.38964 * 120.15513 * 0.02562 * 19 18 17 21 21 C 1.36039 * 121.15952 * 359.97438 * 20 19 18 22 22 C 1.40810 * 105.51927 * 359.74427 * 17 16 15 23 23 H 0.96993 * 120.00062 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46568 * 60.00375 * 9 7 2 25 25 H 1.09002 * 109.46992 * 300.00727 * 9 7 2 26 26 H 1.09002 * 109.46725 * 60.00168 * 10 9 7 27 27 H 1.08998 * 109.46794 * 299.99993 * 10 9 7 28 28 H 1.09001 * 109.47190 * 299.99732 * 12 11 10 29 29 H 1.09004 * 109.47089 * 59.99865 * 12 11 10 30 30 H 1.09001 * 109.46962 * 300.00183 * 13 12 11 31 31 H 1.09004 * 109.46832 * 60.00020 * 13 12 11 32 32 H 1.08003 * 120.11887 * 359.94904 * 18 17 16 33 33 H 1.08008 * 119.92016 * 179.97438 * 19 18 17 34 34 H 1.08003 * 119.41946 * 180.02562 * 20 19 18 35 35 H 1.08000 * 119.89479 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 16 1.3383 -5.2330 -0.0013 12 6 2.6649 -6.4702 -0.0020 13 6 2.0541 -7.8731 -0.0020 14 6 3.1563 -8.9008 -0.0033 15 7 3.6428 -9.3548 1.0987 16 16 4.8544 -10.4836 0.7423 17 6 4.7200 -10.3563 -1.0130 18 6 5.3786 -10.9694 -2.0697 19 6 5.0399 -10.6528 -3.3557 20 6 4.0404 -9.7201 -3.6049 21 6 3.3808 -9.1060 -2.5859 22 6 3.7001 -9.4137 -1.2453 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8895 27 1 2.8719 -3.6044 -0.8905 28 1 3.2810 -6.3418 -0.8920 29 1 3.2811 -6.3427 0.8880 30 1 1.4383 -8.0012 0.8881 31 1 1.4377 -8.0009 -0.8919 32 1 6.1561 -11.6938 -1.8766 33 1 5.5510 -11.1280 -4.1800 34 1 3.7821 -9.4792 -4.6255 35 1 2.6070 -8.3845 -2.8029 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596382443.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:43 Heat of formation + Delta-G solvation = 11.886910 kcal Electronic energy + Delta-G solvation = -17209.022017 eV Core-core repulsion = 14422.909586 eV Total energy + Delta-G solvation = -2786.112431 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.060 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.01888 -38.11267 -35.77857 -33.85403 -32.91028 -31.98482 -31.48023 -27.46743 -26.32768 -24.24526 -23.69026 -22.94586 -20.99522 -19.56328 -18.67293 -17.40940 -17.25589 -16.56172 -16.45882 -16.11705 -16.00310 -15.61458 -15.31900 -15.19511 -14.68925 -14.49474 -13.92021 -13.67098 -13.33964 -13.14724 -12.94881 -12.93689 -12.63325 -12.46606 -12.40298 -12.12047 -11.77652 -11.71324 -11.61245 -11.20419 -10.85829 -10.84465 -10.60509 -10.00559 -8.96532 -8.65417 -8.23314 -6.36728 -0.57538 0.17960 0.31825 0.56005 0.80554 1.08060 1.41207 1.42652 1.53874 1.70837 2.40480 2.62835 3.10044 3.17233 3.50303 3.80775 3.84378 3.97599 4.10692 4.24934 4.32146 4.36513 4.38093 4.43454 4.49786 4.58817 4.86693 4.87671 4.93134 5.05275 5.26223 5.38247 5.42839 5.50190 5.54265 5.73847 5.82683 6.11201 6.77530 7.32757 8.88475 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.025863 B = 0.002663 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.363692 B =10510.188879 C =10841.933439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.971 3.029 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.045 3.955 10 C -0.051 4.051 11 S -0.292 6.292 12 C -0.065 4.065 13 C -0.031 4.031 14 C 0.168 3.832 15 N -0.472 5.472 16 S 0.161 5.839 17 C -0.146 4.146 18 C -0.093 4.093 19 C -0.069 4.069 20 C -0.121 4.121 21 C -0.056 4.056 22 C -0.152 4.152 23 H 0.266 0.734 24 H 0.001 0.999 25 H -0.004 1.004 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.153 0.847 33 H 0.171 0.829 34 H 0.163 0.837 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.320 -24.785 -8.497 28.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.084 0.916 9 C 0.007 3.993 10 C -0.199 4.199 11 S -0.064 6.064 12 C -0.215 4.215 13 C -0.074 4.074 14 C -0.023 4.023 15 N -0.283 5.283 16 S 0.316 5.684 17 C -0.266 4.266 18 C -0.116 4.116 19 C -0.091 4.091 20 C -0.141 4.141 21 C -0.078 4.078 22 C -0.164 4.164 23 H 0.075 0.925 24 H 0.019 0.981 25 H 0.014 0.986 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.135 0.865 32 H 0.171 0.829 33 H 0.189 0.811 34 H 0.181 0.819 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.727 -25.472 -6.223 28.331 hybrid contribution 0.760 1.722 -0.994 2.129 sum 11.487 -23.750 -7.217 27.351 Atomic orbital electron populations 1.70105 1.07917 1.28081 1.50929 1.26007 0.95789 1.03475 0.94360 0.85363 0.78557 0.77969 0.78653 1.19467 1.20739 1.18654 1.21552 0.93667 0.91465 1.51628 0.91611 1.18672 0.93650 0.91261 0.95766 1.23346 1.00229 0.92494 1.03855 1.86850 1.18410 1.02956 1.98166 1.23145 0.98563 0.94348 1.05451 1.20147 0.93422 0.87532 1.06332 1.22666 0.96399 0.95739 0.87517 1.75757 1.11835 1.13320 1.27437 1.84732 1.40414 1.45410 0.97828 1.23735 1.01334 1.02221 0.99298 1.20391 1.00195 1.00331 0.90635 1.21563 0.95514 0.95397 0.96632 1.21250 0.95957 0.96290 1.00584 1.21073 0.99313 0.98587 0.88869 1.20329 0.99784 1.01013 0.95226 0.92528 0.98090 0.98556 0.91046 0.90251 0.88797 0.90728 0.89000 0.86510 0.82897 0.81114 0.81931 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 7 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.04 2.40 4.98 29.85 0.15 2.55 16 10 C -0.05 -2.15 5.88 71.98 0.42 -1.72 16 11 S -0.29 -10.40 21.74 -56.49 -1.23 -11.63 16 12 C -0.07 -1.74 5.92 71.98 0.43 -1.31 16 13 C -0.03 -0.71 5.50 29.85 0.16 -0.55 16 14 C 0.17 4.05 6.13 44.74 0.27 4.33 16 15 N -0.47 -13.03 11.84 -46.35 -0.55 -13.58 16 16 S 0.16 3.70 23.86 -56.49 -1.35 2.35 16 17 C -0.15 -2.89 6.71 23.03 0.15 -2.73 16 18 C -0.09 -1.22 10.02 22.04 0.22 -1.00 16 19 C -0.07 -0.62 10.00 22.09 0.22 -0.40 16 20 C -0.12 -1.25 9.92 21.93 0.22 -1.03 16 21 C -0.06 -0.85 9.72 22.49 0.22 -0.63 16 22 C -0.15 -3.15 6.04 -20.20 -0.12 -3.27 16 23 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 24 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 25 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 28 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.12 2.20 7.54 -2.38 -0.02 2.19 16 32 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 33 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 34 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 35 H 0.15 1.83 7.64 -2.91 -0.02 1.81 16 Total: -1.00 -69.32 329.38 3.31 -66.01 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: 1.08 Total: 3.17 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 3.04 Total: -35.70 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -0.26 Total: -69.99 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -6.71 SS G_CDS: -2.58 Total: -9.28 kcal Total: -69.32 3.31 -66.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596382443.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.900 kcal (2) G-P(sol) polarization free energy of solvation -69.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds