Wall clock time and date at job start Tue Mar 31 2020 07:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99593 * 2 1 4 4 H 1.48501 * 109.47132 * 269.99753 * 3 2 1 5 5 H 1.48494 * 109.47110 * 29.99883 * 3 2 1 6 6 H 1.48500 * 109.47129 * 150.00244 * 3 2 1 7 7 C 1.37869 * 120.00479 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00475 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99835 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46950 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.46952 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99946 * 180.27478 * 11 10 9 13 13 O 1.21718 * 119.99998 * 359.72417 * 12 11 10 14 14 C 1.46577 * 119.99760 * 179.72444 * 12 11 10 15 15 C 1.40544 * 126.57933 * 353.95429 * 14 12 11 16 16 N 1.30744 * 108.73441 * 179.81311 * 15 14 12 17 17 N 1.40010 * 109.60663 * 0.45768 * 16 15 14 18 18 C 1.36275 * 132.01113 * 179.73128 * 17 16 15 19 19 C 1.35176 * 120.73336 * 179.97438 * 18 17 16 20 20 C 1.40158 * 120.33136 * 0.02898 * 19 18 17 21 21 C 1.36546 * 119.39444 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.38419 * 180.02562 * 21 20 19 23 23 C 1.36556 * 107.90619 * 359.71132 * 17 16 15 24 24 H 0.96999 * 120.00724 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46865 * 60.00206 * 9 7 2 26 26 H 1.08996 * 109.46780 * 299.99909 * 9 7 2 27 27 H 1.09000 * 109.47394 * 60.00253 * 10 9 7 28 28 H 1.09002 * 109.47328 * 299.99818 * 10 9 7 29 29 H 0.97004 * 119.99703 * 0.02562 * 11 10 9 30 30 H 1.08002 * 125.63159 * 0.02562 * 15 14 12 31 31 H 1.08000 * 119.63104 * 359.97438 * 18 17 16 32 32 H 1.08004 * 119.83887 * 180.02562 * 19 18 17 33 33 H 1.07994 * 120.30236 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 2.1870 -6.0979 0.0043 13 8 3.4041 -6.0978 0.0047 14 6 1.4541 -7.3673 0.0098 15 6 0.0633 -7.5309 0.1290 16 7 -0.2143 -8.8079 0.0884 17 7 0.9701 -9.5421 -0.0476 18 6 1.2088 -10.8812 -0.1298 19 6 2.4693 -11.3515 -0.2608 20 6 3.5536 -10.4650 -0.3136 21 6 3.3253 -9.1213 -0.2310 22 17 4.6493 -8.0002 -0.2943 23 6 2.0092 -8.6573 -0.0971 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 2.8721 -3.6042 0.8895 28 1 2.8721 -3.6042 -0.8905 29 1 0.5430 -4.9308 -0.0019 30 1 -0.6575 -6.7334 0.2331 31 1 0.3816 -11.5745 -0.0898 32 1 2.6418 -12.4158 -0.3250 33 1 4.5604 -10.8413 -0.4187 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597495244.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:40 Heat of formation + Delta-G solvation = 71.023966 kcal Electronic energy + Delta-G solvation = -20046.602847 eV Core-core repulsion = 16714.717870 eV Total energy + Delta-G solvation = -3331.884977 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.38235 -38.80272 -37.62416 -36.35617 -34.69518 -32.95317 -32.69350 -31.12940 -29.97579 -28.55838 -25.01819 -24.17344 -23.24046 -22.46829 -20.89437 -19.94452 -18.13532 -17.21306 -16.55596 -16.39694 -16.12706 -15.96372 -15.34085 -14.79874 -14.54395 -14.43985 -13.61342 -13.30465 -13.02663 -12.91674 -12.81675 -12.48803 -12.25958 -11.63752 -11.50047 -11.14336 -10.99056 -10.65314 -10.55439 -10.24568 -10.12914 -9.78304 -9.57247 -9.29183 -8.78267 -8.45649 -8.25520 -7.79779 -6.05450 -4.07813 0.22013 0.64007 1.65217 2.08955 2.26195 2.80944 3.32186 3.38190 3.42360 3.70854 3.84903 4.06267 4.15662 4.34118 4.41232 4.47550 4.88304 5.02810 5.09632 5.31685 5.33350 5.48097 5.68548 5.79833 6.10747 6.42398 6.45246 6.48031 6.83199 7.07619 7.15916 7.58618 7.68589 7.93673 8.17957 8.34541 8.86750 8.98815 9.56776 11.06214 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.030126 B = 0.003362 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.208951 B = 8325.583990 C = 9229.611309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.127 3.873 11 N -0.720 5.720 12 C 0.578 3.422 13 O -0.537 6.537 14 C -0.282 4.282 15 C 0.117 3.883 16 N -0.312 5.312 17 N -0.264 5.264 18 C 0.109 3.891 19 C -0.153 4.153 20 C -0.080 4.080 21 C -0.032 4.032 22 Cl 0.020 6.980 23 C 0.150 3.850 24 H 0.261 0.739 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.392 0.608 30 H 0.204 0.796 31 H 0.175 0.825 32 H 0.164 0.836 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.651 -25.133 -0.579 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.026 4.026 10 C 0.005 3.995 11 N -0.369 5.369 12 C 0.365 3.635 13 O -0.416 6.416 14 C -0.296 4.296 15 C -0.062 4.062 16 N -0.133 5.133 17 N -0.029 5.029 18 C -0.017 4.017 19 C -0.174 4.174 20 C -0.104 4.104 21 C -0.061 4.061 22 Cl 0.050 6.950 23 C 0.029 3.971 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.225 0.775 30 H 0.221 0.779 31 H 0.193 0.807 32 H 0.182 0.818 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.433 -25.653 -0.528 25.773 hybrid contribution 0.462 1.560 -0.036 1.627 sum 2.896 -24.093 -0.564 24.273 Atomic orbital electron populations 1.69950 1.06070 1.26803 1.50550 1.24988 0.94876 0.99355 0.95075 0.86530 0.79863 0.83104 0.78167 1.20597 1.21214 1.19736 1.21066 0.93250 0.90435 1.51101 0.92269 1.19327 0.94268 0.91160 0.97798 1.21661 0.95898 0.81231 1.00715 1.46107 1.10096 1.06202 1.74520 1.16943 0.87167 0.82407 0.77010 1.90966 1.12547 1.87205 1.50905 1.20084 0.93013 0.92623 1.23900 1.24207 0.95212 0.94027 0.92799 1.77615 1.00334 1.04719 1.30624 1.46075 1.06009 1.05465 1.45341 1.21629 0.99450 0.81237 0.99352 1.20831 0.90065 1.01488 1.05061 1.21286 1.01049 0.90557 0.97538 1.20267 0.89038 0.92172 1.04670 1.98504 1.42359 1.58445 1.95730 1.18950 0.88004 0.90307 0.99809 0.92896 0.95964 0.95962 0.92606 0.92638 0.77457 0.77937 0.80735 0.81829 0.83003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 10 C 0.13 2.74 5.61 -4.04 -0.02 2.71 16 11 N -0.72 -12.96 5.54 -61.64 -0.34 -13.30 16 12 C 0.58 10.44 7.78 -12.90 -0.10 10.34 16 13 O -0.54 -10.89 12.09 5.17 0.06 -10.83 16 14 C -0.28 -4.33 6.16 -104.68 -0.65 -4.97 16 15 C 0.12 1.52 11.44 -17.15 -0.20 1.32 16 16 N -0.31 -4.09 12.57 30.75 0.39 -3.70 16 17 N -0.26 -3.20 3.86 -10.52 -0.04 -3.24 16 18 C 0.11 0.85 11.17 -16.67 -0.19 0.67 16 19 C -0.15 -0.91 9.98 -39.95 -0.40 -1.31 16 20 C -0.08 -0.66 9.87 -39.47 -0.39 -1.05 16 21 C -0.03 -0.41 6.33 -39.46 -0.25 -0.66 16 22 Cl 0.02 0.29 24.35 -51.86 -1.26 -0.97 16 23 C 0.15 2.13 6.74 -84.04 -0.57 1.56 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.39 6.08 7.43 -40.82 -0.30 5.77 16 30 H 0.20 1.96 7.49 -52.49 -0.39 1.57 16 31 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.16 0.32 8.06 -52.48 -0.42 -0.11 16 33 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 305.02 15.07 4.60 4.60 Total: -1.00 -34.21 305.02 -7.39 -41.60 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -3.20 Total: -0.61 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -3.31 Total: -4.51 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.74 Total: -45.80 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.06 Total: -10.83 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.26 Total: -0.97 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.21 -7.39 -41.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597495244.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.622 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds