Wall clock time and date at job start Tue Mar 31 2020 07:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99593 * 2 1 4 4 H 1.48501 * 109.47132 * 269.99753 * 3 2 1 5 5 H 1.48494 * 109.47110 * 29.99883 * 3 2 1 6 6 H 1.48500 * 109.47129 * 150.00244 * 3 2 1 7 7 C 1.37869 * 120.00479 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00475 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99835 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46950 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.46952 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99946 * 180.27478 * 11 10 9 13 13 O 1.21718 * 119.99998 * 359.72417 * 12 11 10 14 14 C 1.46577 * 119.99760 * 179.72444 * 12 11 10 15 15 C 1.40544 * 126.57933 * 353.95429 * 14 12 11 16 16 N 1.30744 * 108.73441 * 179.81311 * 15 14 12 17 17 N 1.40010 * 109.60663 * 0.45768 * 16 15 14 18 18 C 1.36275 * 132.01113 * 179.73128 * 17 16 15 19 19 C 1.35176 * 120.73336 * 179.97438 * 18 17 16 20 20 C 1.40158 * 120.33136 * 0.02898 * 19 18 17 21 21 C 1.36546 * 119.39444 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.38419 * 180.02562 * 21 20 19 23 23 C 1.36556 * 107.90619 * 359.71132 * 17 16 15 24 24 H 0.96999 * 120.00724 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46865 * 60.00206 * 9 7 2 26 26 H 1.08996 * 109.46780 * 299.99909 * 9 7 2 27 27 H 1.09000 * 109.47394 * 60.00253 * 10 9 7 28 28 H 1.09002 * 109.47328 * 299.99818 * 10 9 7 29 29 H 0.97004 * 119.99703 * 0.02562 * 11 10 9 30 30 H 1.08002 * 125.63159 * 0.02562 * 15 14 12 31 31 H 1.08000 * 119.63104 * 359.97438 * 18 17 16 32 32 H 1.08004 * 119.83887 * 180.02562 * 19 18 17 33 33 H 1.07994 * 120.30236 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 2.1870 -6.0979 0.0043 13 8 3.4041 -6.0978 0.0047 14 6 1.4541 -7.3673 0.0098 15 6 0.0633 -7.5309 0.1290 16 7 -0.2143 -8.8079 0.0884 17 7 0.9701 -9.5421 -0.0476 18 6 1.2088 -10.8812 -0.1298 19 6 2.4693 -11.3515 -0.2608 20 6 3.5536 -10.4650 -0.3136 21 6 3.3253 -9.1213 -0.2310 22 17 4.6493 -8.0002 -0.2943 23 6 2.0092 -8.6573 -0.0971 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 2.8721 -3.6042 0.8895 28 1 2.8721 -3.6042 -0.8905 29 1 0.5430 -4.9308 -0.0019 30 1 -0.6575 -6.7334 0.2331 31 1 0.3816 -11.5745 -0.0898 32 1 2.6418 -12.4158 -0.3250 33 1 4.5604 -10.8413 -0.4187 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597495244.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:39 Heat of formation + Delta-G solvation = 47.678771 kcal Electronic energy + Delta-G solvation = -20047.615170 eV Core-core repulsion = 16714.717870 eV Total energy + Delta-G solvation = -3332.897300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.27199 -40.17037 -38.48656 -37.27865 -36.43148 -34.74071 -33.76346 -31.98082 -31.64473 -29.72018 -26.81856 -24.94322 -24.49390 -23.42974 -22.71015 -21.21068 -19.19289 -18.48481 -17.97740 -17.44906 -17.09044 -17.05419 -16.46827 -16.27577 -16.11570 -16.01354 -14.78026 -14.60028 -14.42674 -14.25263 -13.77096 -13.71992 -13.22697 -13.18870 -12.92996 -12.57837 -12.50577 -12.40604 -12.14520 -11.73258 -11.52133 -11.36060 -11.09565 -10.60522 -10.58086 -10.13391 -9.84648 -8.73048 -8.22059 -6.32219 -0.55806 -0.16920 0.81997 1.03758 1.40970 1.42523 1.43008 1.54552 2.05456 2.34848 2.51821 2.57834 3.12500 3.18485 3.28072 3.67843 3.77171 4.01763 4.18603 4.34194 4.48125 4.56911 4.66314 4.73980 4.91125 4.93491 5.12028 5.21860 5.38306 5.58315 5.63212 5.63788 5.83572 6.19866 6.24632 6.79282 6.82331 7.36802 7.48999 8.89885 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.030126 B = 0.003362 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.208951 B = 8325.583990 C = 9229.611309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.149 3.851 11 N -0.718 5.718 12 C 0.577 3.423 13 O -0.565 6.565 14 C -0.329 4.329 15 C 0.126 3.874 16 N -0.329 5.329 17 N -0.264 5.264 18 C 0.104 3.896 19 C -0.131 4.131 20 C -0.045 4.045 21 C -0.079 4.079 22 Cl -0.015 7.015 23 C 0.143 3.857 24 H 0.265 0.735 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.404 0.596 30 H 0.224 0.776 31 H 0.214 0.786 32 H 0.221 0.779 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.832 -28.046 -0.705 28.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.026 3.974 11 N -0.369 5.369 12 C 0.366 3.634 13 O -0.446 6.446 14 C -0.344 4.344 15 C -0.054 4.054 16 N -0.150 5.150 17 N -0.029 5.029 18 C -0.022 4.022 19 C -0.152 4.152 20 C -0.069 4.069 21 C -0.108 4.108 22 Cl 0.014 6.986 23 C 0.021 3.979 24 H 0.074 0.926 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.239 0.761 30 H 0.240 0.760 31 H 0.231 0.769 32 H 0.237 0.763 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.586 -28.598 -0.654 28.723 hybrid contribution 0.417 2.118 -0.013 2.159 sum 3.004 -26.480 -0.667 26.659 Atomic orbital electron populations 1.70056 1.07518 1.27948 1.51113 1.25864 0.95798 1.03052 0.94467 0.85455 0.78639 0.78503 0.78509 1.19771 1.20473 1.19087 1.21478 0.93566 0.91988 1.51386 0.92382 1.19129 0.94253 0.91761 0.96273 1.21123 0.94838 0.81928 0.99547 1.45888 1.10554 1.05237 1.75225 1.17342 0.87044 0.83061 0.75918 1.90950 1.13780 1.87660 1.52208 1.19784 0.94023 0.91908 1.28685 1.24486 0.94665 0.94687 0.91582 1.77543 1.00981 1.04655 1.31779 1.46381 1.05115 1.06673 1.44690 1.22672 1.01801 0.79918 0.97779 1.21549 0.88204 1.03600 1.01838 1.21891 1.03544 0.88931 0.92551 1.20459 0.87722 0.93300 1.09287 1.98482 1.43545 1.60207 1.96336 1.19124 0.89133 0.90437 0.99187 0.92568 0.97396 0.97322 0.93759 0.93817 0.76121 0.75980 0.76947 0.76277 0.79904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.22 13.29 21.44 0.28 -54.94 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.55 -31.25 9.11 25.60 0.23 -31.02 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.21 5.09 29.85 0.15 1.36 16 10 C 0.15 6.75 5.61 86.38 0.48 7.24 16 11 N -0.72 -27.19 5.54 -467.15 -2.59 -29.78 16 12 C 0.58 21.91 7.78 86.42 0.67 22.59 16 13 O -0.57 -24.17 12.09 -4.40 -0.05 -24.22 16 14 C -0.33 -10.43 6.16 -19.90 -0.12 -10.55 16 15 C 0.13 3.27 11.44 85.42 0.98 4.25 16 16 N -0.33 -8.28 12.57 -56.62 -0.71 -9.00 16 17 N -0.26 -5.90 3.86 -187.20 -0.72 -6.62 16 18 C 0.10 1.16 11.17 83.30 0.93 2.09 16 19 C -0.13 -0.83 9.98 22.03 0.22 -0.61 16 20 C -0.05 -0.58 9.87 22.34 0.22 -0.36 16 21 C -0.08 -1.90 6.33 22.35 0.14 -1.76 16 22 Cl -0.01 -0.45 24.35 -2.72 -0.07 -0.52 16 23 C 0.14 3.99 6.74 39.52 0.27 4.26 16 24 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 25 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.40 13.14 7.43 -92.71 -0.69 12.46 16 30 H 0.22 4.37 7.49 -2.91 -0.02 4.35 16 31 H 0.21 0.70 8.06 -2.91 -0.02 0.68 16 32 H 0.22 -0.95 8.06 -2.91 -0.02 -0.98 16 33 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -78.06 305.02 3.27 -74.79 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 0.47 Total: 5.46 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 4.64 Total: -1.66 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -3.74 Total: -100.34 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.05 Total: -24.22 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.07 Total: -0.52 kcal Total: -78.06 3.27 -74.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597495244.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.467 kcal (2) G-P(sol) polarization free energy of solvation -78.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds