Wall clock time and date at job start Tue Mar 31 2020 07:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38786 * 119.61396 * 2 1 4 4 C 1.37656 * 120.06965 * 180.02562 * 3 2 1 5 5 C 1.39338 * 119.95171 * 0.02562 * 4 3 2 6 6 S 1.76072 * 131.73033 * 179.97438 * 5 4 3 7 7 C 1.70647 * 90.82764 * 180.02562 * 6 5 4 8 8 C 1.50704 * 124.24063 * 179.97438 * 7 6 5 9 9 S 1.81398 * 109.47382 * 269.98165 * 8 7 6 10 10 C 1.81396 * 102.99890 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.46900 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47146 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00124 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00195 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99989 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00253 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46879 * 60.00055 * 16 14 12 18 18 H 1.48499 * 109.47221 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47030 * 300.00538 * 16 14 12 20 20 N 1.27931 * 111.52145 * 0.02562 * 7 6 5 21 21 C 1.34658 * 117.84951 * 359.97438 * 20 7 6 22 22 C 1.36183 * 119.60805 * 180.22718 * 2 1 3 23 23 H 1.09006 * 109.47450 * 89.99835 * 1 2 3 24 24 H 1.09000 * 109.47617 * 209.99759 * 1 2 3 25 25 H 1.09001 * 109.46912 * 330.00062 * 1 2 3 26 26 H 1.08002 * 119.96193 * 359.97438 * 3 2 1 27 27 H 1.07999 * 120.02447 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46826 * 29.98160 * 8 7 6 29 29 H 1.08996 * 109.47009 * 149.97856 * 8 7 6 30 30 H 1.09000 * 109.46978 * 299.99869 * 10 9 8 31 31 H 1.08997 * 109.47695 * 59.99849 * 10 9 8 32 32 H 1.09000 * 109.47222 * 299.99749 * 11 10 9 33 33 H 1.09002 * 109.47698 * 59.99756 * 11 10 9 34 34 H 0.96992 * 120.00108 * 179.97438 * 15 14 12 35 35 H 1.08002 * 119.78786 * 359.80656 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1928 1.2066 0.0000 4 6 3.5693 1.2175 -0.0005 5 6 4.2745 0.0158 -0.0016 6 16 6.0010 -0.3299 -0.0031 7 6 5.6901 -2.0078 -0.0044 8 6 6.7607 -3.0685 -0.0066 9 16 7.1879 -3.4929 -1.7177 10 6 8.4680 -4.7622 -1.5158 11 6 8.9411 -5.2328 -2.8926 12 6 10.0050 -6.2869 -2.7249 13 1 10.3127 -6.5911 -1.7354 14 6 10.5850 -6.8638 -3.8348 15 7 10.2100 -6.4938 -5.0399 16 14 11.9042 -8.1698 -3.6270 17 1 11.3460 -9.3219 -2.8743 18 1 12.3624 -8.6276 -4.9633 19 1 13.0524 -7.5988 -2.8782 20 7 4.4344 -2.2525 -0.0043 21 6 3.5893 -1.2042 -0.0027 22 6 2.1798 -1.1840 -0.0047 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6458 2.1379 -0.0004 27 1 4.1022 2.1569 -0.0001 28 1 7.6459 -2.6924 0.5063 29 1 6.3931 -3.9568 0.5071 30 1 9.3106 -4.3441 -0.9650 31 1 8.0573 -5.6080 -0.9645 32 1 8.0984 -5.6511 -3.4430 33 1 9.3517 -4.3873 -3.4444 34 1 10.6182 -6.8994 -5.8207 35 1 1.6299 -2.1136 -0.0052 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600648298.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:28 Heat of formation + Delta-G solvation = 35.247625 kcal Electronic energy + Delta-G solvation = -17038.085174 eV Core-core repulsion = 14252.985740 eV Total energy + Delta-G solvation = -2785.099434 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.060 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.59203 -37.62729 -33.70927 -32.93954 -31.64748 -30.89481 -28.93766 -27.14276 -25.31403 -23.57232 -22.81667 -21.25220 -20.39297 -18.45844 -16.82819 -16.54412 -16.14777 -15.84692 -15.06387 -14.76792 -14.51812 -14.30927 -14.08447 -13.85569 -13.65204 -13.12081 -12.99088 -12.68645 -12.37664 -12.13555 -12.01673 -11.65309 -11.39878 -11.06533 -11.02168 -10.65055 -10.22372 -10.17961 -9.80797 -9.69428 -9.64513 -9.11411 -8.67575 -8.43172 -8.25675 -7.23599 -6.07066 -4.12098 0.15581 0.88660 1.07770 1.57819 1.76864 2.48910 3.07656 3.29979 3.34770 3.36940 3.45859 3.64895 4.34962 4.40829 4.47531 4.73131 4.81522 4.90709 5.08373 5.18036 5.26016 5.28200 5.28394 5.46102 5.62085 5.67622 5.85171 5.94395 5.97009 6.12347 6.19440 6.45745 6.67721 7.49388 7.54140 7.62260 7.88503 8.25011 8.92541 9.51811 11.03682 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.040015 B = 0.002559 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.575606 B =10939.407924 C =11206.195263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.076 4.076 3 C -0.105 4.105 4 C -0.066 4.066 5 C -0.193 4.193 6 S 0.121 5.879 7 C 0.120 3.880 8 C -0.031 4.031 9 S -0.251 6.251 10 C -0.061 4.061 11 C 0.038 3.962 12 C -0.522 4.522 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.890 5.890 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 N -0.459 5.459 21 C 0.092 3.908 22 C -0.065 4.065 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.264 0.736 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.116 16.458 12.840 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.079 4.079 3 C -0.127 4.127 4 C -0.089 4.089 5 C -0.312 4.312 6 S 0.378 5.622 7 C -0.164 4.164 8 C -0.182 4.182 9 S -0.024 6.024 10 C -0.209 4.209 11 C -0.001 4.001 12 C -0.562 4.562 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.529 5.529 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 N -0.174 5.174 21 C -0.029 4.029 22 C -0.086 4.086 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.704 16.831 11.740 25.841 hybrid contribution 0.413 -1.350 1.084 1.780 sum -15.292 15.481 12.824 25.258 Atomic orbital electron populations 1.20814 0.90278 1.03111 1.02778 1.19440 0.96581 0.92443 0.99462 1.20997 0.93211 0.97911 1.00569 1.20313 0.93809 0.95257 0.99489 1.23956 0.97040 0.99005 1.11194 1.83979 1.02017 1.02919 1.73306 1.25822 0.93875 0.97069 0.99666 1.21929 0.96751 0.98491 1.01068 1.87301 1.53950 1.55034 1.06151 1.23791 0.95383 0.95713 1.06008 1.18907 0.96541 0.96571 0.88075 1.21037 1.20910 1.21466 0.92793 0.92418 1.25018 0.97059 0.97012 0.95177 1.69960 1.42574 1.42701 0.97628 0.86565 0.81828 0.81782 0.77286 1.20132 1.21165 1.20128 1.66140 1.01663 1.33383 1.16183 1.19144 0.94907 0.85908 1.02940 1.20234 0.89866 0.98674 0.99873 0.90756 0.91211 0.91205 0.84844 0.85126 0.87902 0.87101 0.91016 0.90968 0.95420 0.95446 0.92676 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 9.98 36.00 0.36 -0.30 16 2 C -0.08 -0.68 5.83 -105.16 -0.61 -1.29 16 3 C -0.11 -0.87 9.68 -39.59 -0.38 -1.26 16 4 C -0.07 -0.65 10.07 -39.38 -0.40 -1.04 16 5 C -0.19 -2.45 6.56 -38.54 -0.25 -2.70 16 6 S 0.12 1.53 23.11 -107.50 -2.48 -0.95 16 7 C 0.12 1.79 6.55 -13.90 -0.09 1.69 16 8 C -0.03 -0.46 6.50 36.01 0.23 -0.22 16 9 S -0.25 -4.72 21.72 -107.50 -2.33 -7.05 16 10 C -0.06 -1.25 5.88 37.16 0.22 -1.03 16 11 C 0.04 0.98 4.98 -27.88 -0.14 0.84 16 12 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 16 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 N -0.46 -7.31 10.57 -9.08 -0.10 -7.41 16 21 C 0.09 1.30 7.00 -84.96 -0.59 0.71 16 22 C -0.07 -0.75 9.66 -39.29 -0.38 -1.13 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 25 H 0.07 0.30 8.08 -51.93 -0.42 -0.11 16 26 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 27 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 28 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 29 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 31 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 330.15 15.07 4.98 4.98 Total: -1.00 -31.70 330.15 -11.28 -42.98 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -4.61 Total: -4.00 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -2.45 Total: -18.95 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.64 Total: -33.30 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -4.82 Total: -8.01 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.70 -11.28 -42.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600648298.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.225 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds