Wall clock time and date at job start Tue Mar 31 2020 07:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38786 * 119.61396 * 2 1 4 4 C 1.37656 * 120.06965 * 180.02562 * 3 2 1 5 5 C 1.39338 * 119.95171 * 0.02562 * 4 3 2 6 6 S 1.76072 * 131.73033 * 179.97438 * 5 4 3 7 7 C 1.70647 * 90.82764 * 180.02562 * 6 5 4 8 8 C 1.50704 * 124.24063 * 179.97438 * 7 6 5 9 9 S 1.81398 * 109.47382 * 269.98165 * 8 7 6 10 10 C 1.81396 * 102.99890 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.46900 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47146 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00124 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00195 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99989 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00253 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46879 * 60.00055 * 16 14 12 18 18 H 1.48499 * 109.47221 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47030 * 300.00538 * 16 14 12 20 20 N 1.27931 * 111.52145 * 0.02562 * 7 6 5 21 21 C 1.34658 * 117.84951 * 359.97438 * 20 7 6 22 22 C 1.36183 * 119.60805 * 180.22718 * 2 1 3 23 23 H 1.09006 * 109.47450 * 89.99835 * 1 2 3 24 24 H 1.09000 * 109.47617 * 209.99759 * 1 2 3 25 25 H 1.09001 * 109.46912 * 330.00062 * 1 2 3 26 26 H 1.08002 * 119.96193 * 359.97438 * 3 2 1 27 27 H 1.07999 * 120.02447 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46826 * 29.98160 * 8 7 6 29 29 H 1.08996 * 109.47009 * 149.97856 * 8 7 6 30 30 H 1.09000 * 109.46978 * 299.99869 * 10 9 8 31 31 H 1.08997 * 109.47695 * 59.99849 * 10 9 8 32 32 H 1.09000 * 109.47222 * 299.99749 * 11 10 9 33 33 H 1.09002 * 109.47698 * 59.99756 * 11 10 9 34 34 H 0.96992 * 120.00108 * 179.97438 * 15 14 12 35 35 H 1.08002 * 119.78786 * 359.80656 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1928 1.2066 0.0000 4 6 3.5693 1.2175 -0.0005 5 6 4.2745 0.0158 -0.0016 6 16 6.0010 -0.3299 -0.0031 7 6 5.6901 -2.0078 -0.0044 8 6 6.7607 -3.0685 -0.0066 9 16 7.1879 -3.4929 -1.7177 10 6 8.4680 -4.7622 -1.5158 11 6 8.9411 -5.2328 -2.8926 12 6 10.0050 -6.2869 -2.7249 13 1 10.3127 -6.5911 -1.7354 14 6 10.5850 -6.8638 -3.8348 15 7 10.2100 -6.4938 -5.0399 16 14 11.9042 -8.1698 -3.6270 17 1 11.3460 -9.3219 -2.8743 18 1 12.3624 -8.6276 -4.9633 19 1 13.0524 -7.5988 -2.8782 20 7 4.4344 -2.2525 -0.0043 21 6 3.5893 -1.2042 -0.0027 22 6 2.1798 -1.1840 -0.0047 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6458 2.1379 -0.0004 27 1 4.1022 2.1569 -0.0001 28 1 7.6459 -2.6924 0.5063 29 1 6.3931 -3.9568 0.5071 30 1 9.3106 -4.3441 -0.9650 31 1 8.0573 -5.6080 -0.9645 32 1 8.0984 -5.6511 -3.4430 33 1 9.3517 -4.3873 -3.4444 34 1 10.6182 -6.8994 -5.8207 35 1 1.6299 -2.1136 -0.0052 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600648298.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:28 Heat of formation + Delta-G solvation = 18.107813 kcal Electronic energy + Delta-G solvation = -17038.828412 eV Core-core repulsion = 14252.985740 eV Total energy + Delta-G solvation = -2785.842672 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.060 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.48744 -38.49370 -35.78481 -33.72501 -32.92554 -32.55658 -29.85728 -27.84550 -27.33776 -24.59951 -23.63563 -23.08726 -21.37597 -19.39147 -18.67589 -17.68050 -17.39058 -16.84910 -16.52838 -16.12560 -15.69595 -15.62428 -15.08640 -14.97000 -14.77501 -14.28003 -14.14617 -13.85221 -13.51367 -13.37020 -13.04089 -12.89432 -12.67107 -12.58026 -12.31589 -12.16470 -11.90556 -11.72409 -11.37251 -11.04181 -10.96840 -10.76085 -10.60140 -9.58341 -9.13543 -8.74206 -8.23032 -6.36842 -0.82422 0.09231 0.12342 0.53064 0.63009 1.38134 1.43163 1.45088 1.53262 1.64366 2.40812 2.61045 2.66333 3.10345 3.47853 3.72116 3.91521 3.97312 4.15115 4.25846 4.27810 4.31258 4.35703 4.49748 4.67439 4.85508 4.87287 4.92730 5.09232 5.11882 5.22625 5.37759 5.48188 5.49047 5.73330 5.75842 6.09869 6.49265 6.77509 7.32703 8.88676 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.040015 B = 0.002559 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.575606 B =10939.407924 C =11206.195263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.069 4.069 3 C -0.091 4.091 4 C -0.074 4.074 5 C -0.207 4.207 6 S 0.142 5.858 7 C 0.092 3.908 8 C -0.012 4.012 9 S -0.290 6.290 10 C -0.047 4.047 11 C 0.044 3.956 12 C -0.541 4.541 13 H 0.071 0.929 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.973 3.027 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.263 1.263 20 N -0.484 5.484 21 C 0.054 3.946 22 C -0.085 4.085 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.174 0.826 27 H 0.157 0.843 28 H 0.129 0.871 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.081 0.919 32 H -0.006 1.006 33 H -0.002 1.002 34 H 0.265 0.735 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.971 17.939 14.545 28.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.072 4.072 3 C -0.112 4.112 4 C -0.096 4.096 5 C -0.326 4.326 6 S 0.399 5.601 7 C -0.192 4.192 8 C -0.163 4.163 9 S -0.063 6.063 10 C -0.195 4.195 11 C 0.005 3.995 12 C -0.581 4.581 13 H 0.089 0.911 14 C -0.199 4.199 15 N -0.572 5.572 16 Si 0.797 3.203 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.188 1.188 20 N -0.200 5.200 21 C -0.066 4.066 22 C -0.107 4.107 23 H 0.101 0.899 24 H 0.091 0.909 25 H 0.111 0.889 26 H 0.191 0.809 27 H 0.174 0.826 28 H 0.147 0.853 29 H 0.135 0.865 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.012 0.988 33 H 0.016 0.984 34 H 0.074 0.926 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.555 18.307 13.459 28.113 hybrid contribution 0.449 -1.629 0.585 1.788 sum -16.106 16.678 14.045 27.107 Atomic orbital electron populations 1.20903 0.87783 1.04465 1.03704 1.19883 0.98336 0.91791 0.97237 1.21526 0.92789 0.99202 0.97715 1.20757 0.94688 0.95190 0.99012 1.24241 0.96923 0.99710 1.11720 1.83704 1.02417 1.01049 1.72926 1.25771 0.93728 0.98237 1.01497 1.21912 0.97948 0.99154 0.97292 1.87358 1.53432 1.54445 1.11100 1.23416 0.96596 0.96758 1.02730 1.18678 0.95071 0.95219 0.90503 1.21514 1.21247 1.21814 0.93493 0.91122 1.26052 0.99597 0.99485 0.94729 1.70114 1.44184 1.44305 0.98630 0.85380 0.78787 0.78748 0.77409 1.18987 1.20997 1.18768 1.66098 1.02446 1.35125 1.16316 1.19494 0.95910 0.86153 1.05061 1.20489 0.89123 1.00044 1.01004 0.89864 0.90892 0.88921 0.80866 0.82579 0.85312 0.86504 0.89425 0.90067 0.98754 0.98358 0.92581 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.98 71.23 0.71 -0.23 16 2 C -0.07 -1.08 5.83 -20.21 -0.12 -1.19 16 3 C -0.09 -1.19 9.68 22.26 0.22 -0.97 16 4 C -0.07 -1.26 10.07 22.40 0.23 -1.04 16 5 C -0.21 -5.08 6.56 22.94 0.15 -4.92 16 6 S 0.14 3.54 23.11 -56.49 -1.31 2.23 16 7 C 0.09 2.74 6.55 88.68 0.58 3.32 16 8 C -0.01 -0.36 6.50 71.24 0.46 0.11 16 9 S -0.29 -11.16 21.72 -56.49 -1.23 -12.39 16 10 C -0.05 -1.95 5.88 71.98 0.42 -1.53 16 11 C 0.04 2.36 4.98 29.85 0.15 2.51 16 12 C -0.54 -30.48 9.11 25.60 0.23 -30.24 16 13 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 14 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 15 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 16 Si 0.97 43.81 29.54 68.60 2.03 45.83 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 20 N -0.48 -15.78 10.57 -182.51 -1.93 -17.71 16 21 C 0.05 1.53 7.00 39.79 0.28 1.81 16 22 C -0.09 -1.91 9.66 22.46 0.22 -1.70 16 23 H 0.08 0.61 8.14 -2.38 -0.02 0.60 16 24 H 0.07 0.60 8.07 -2.39 -0.02 0.58 16 25 H 0.09 0.40 8.08 -2.39 -0.02 0.38 16 26 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 27 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 28 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 30 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 31 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 32 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -71.49 330.15 2.92 -68.56 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.08 Total: 4.18 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: 3.99 Total: -33.64 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -1.64 Total: -74.79 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -7.62 SS G_CDS: -2.53 Total: -10.15 kcal Total: -71.49 2.92 -68.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600648298.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.672 kcal (2) G-P(sol) polarization free energy of solvation -71.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds