Wall clock time and date at job start Tue Mar 31 2020 07:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.27569 * 126.41724 * 2 1 4 4 N 1.39153 * 113.16398 * 179.97438 * 3 2 1 5 5 C 1.39570 * 124.43933 * 179.97438 * 4 3 2 6 6 C 1.39025 * 119.68274 * 359.97438 * 5 4 3 7 7 C 1.38359 * 119.11571 * 179.97438 * 6 5 4 8 8 C 1.38924 * 118.48236 * 359.97438 * 7 6 5 9 9 Cl 1.73604 * 120.35746 * 180.02562 * 8 7 6 10 10 C 1.38207 * 119.28761 * 0.02562 * 8 7 6 11 11 N 1.31922 * 120.82656 * 359.74082 * 10 8 7 12 12 C 1.35308 * 111.15988 * 359.90185 * 4 3 2 13 13 O 1.21288 * 127.67949 * 180.02562 * 12 4 3 14 14 C 1.51438 * 126.41273 * 179.97438 * 2 1 3 15 15 H 1.09005 * 110.61016 * 298.66965 * 14 2 1 16 16 C 1.52997 * 110.61048 * 61.48759 * 14 2 1 17 17 C 1.50701 * 109.47212 * 182.84607 * 16 14 2 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 14 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 14 20 20 N 1.31512 * 119.99594 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99875 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47061 * 90.00257 * 21 19 17 23 23 H 1.48497 * 109.46906 * 209.99430 * 21 19 17 24 24 H 1.48498 * 109.47403 * 329.99876 * 21 19 17 25 25 H 1.08999 * 109.47006 * 270.00759 * 1 2 3 26 26 H 1.09004 * 109.46589 * 30.00547 * 1 2 3 27 27 H 1.08997 * 109.47084 * 150.00294 * 1 2 3 28 28 H 1.08000 * 120.43898 * 359.97438 * 6 5 4 29 29 H 1.07997 * 120.75552 * 179.97438 * 7 6 5 30 30 H 1.08001 * 119.58621 * 179.97438 * 10 8 7 31 31 H 1.09002 * 109.47153 * 62.84608 * 16 14 2 32 32 H 1.09001 * 109.46832 * 302.84799 * 16 14 2 33 33 H 0.97002 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6189 0.7075 0.0006 5 6 4.6511 1.6470 0.0002 6 6 4.3472 3.0036 -0.0014 7 6 5.3796 3.9248 -0.0012 8 6 6.6869 3.4547 0.0011 9 17 8.0194 4.5675 0.0020 10 6 6.9152 2.0916 0.0025 11 7 5.9097 1.2377 0.0069 12 6 3.8050 -0.6327 0.0032 13 8 4.8578 -1.2349 0.0047 14 6 2.4060 -1.2187 0.0005 15 1 2.2398 -1.8177 0.8960 16 6 2.1756 -2.0585 -1.2574 17 6 3.0304 -3.2982 -1.1974 18 1 3.6733 -3.4701 -0.3469 19 6 2.9908 -4.2134 -2.2279 20 7 3.7363 -5.2954 -2.1753 21 14 1.8781 -3.9163 -3.6987 22 1 2.6204 -3.1544 -4.7350 23 1 1.4416 -5.2197 -4.2604 24 1 0.6880 -3.1385 -3.2700 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5140 27 1 -0.3633 -0.8900 -0.5138 28 1 3.3190 3.3340 -0.0027 29 1 5.1738 4.9849 -0.0028 30 1 7.9296 1.7209 0.0039 31 1 2.4435 -1.4747 -2.1381 32 1 1.1252 -2.3438 -1.3164 33 1 3.7088 -5.9391 -2.9004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600814225.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:02 Heat of formation + Delta-G solvation = 37.185577 kcal Electronic energy + Delta-G solvation = -20523.017554 eV Core-core repulsion = 17189.665234 eV Total energy + Delta-G solvation = -3333.352319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.79985 -41.08718 -38.68668 -37.71902 -36.02401 -34.73347 -33.69745 -32.69096 -31.55034 -29.07127 -28.33112 -25.44657 -24.61279 -23.55564 -21.67045 -20.97045 -19.51160 -18.65954 -17.87054 -17.60467 -17.39861 -16.48870 -16.22522 -16.06145 -15.66616 -15.32827 -14.73995 -14.59045 -14.45221 -14.33706 -13.93088 -13.78816 -13.54377 -13.34249 -13.19297 -12.84153 -12.69882 -12.44029 -12.32268 -11.85753 -11.66862 -11.55683 -11.06201 -10.95957 -10.82290 -10.79399 -10.40771 -9.24321 -8.27714 -6.34347 -0.35514 0.03607 0.54005 0.78976 1.08273 1.35258 1.38450 1.48806 1.48966 2.35372 2.58288 2.70855 3.04477 3.07155 3.31093 3.58809 3.63671 3.82315 3.92117 4.11845 4.39018 4.50701 4.58250 4.67208 4.80815 4.90632 4.98553 5.01418 5.06903 5.12894 5.38777 5.47630 5.58606 6.23863 6.27329 6.63564 6.75721 6.90129 7.28040 8.89908 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.020403 B = 0.004218 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.040159 B = 6637.270616 C = 7451.472792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.148 3.852 3 N -0.254 5.254 4 N -0.431 5.431 5 C 0.357 3.643 6 C -0.160 4.160 7 C -0.027 4.027 8 C -0.114 4.114 9 Cl -0.039 7.039 10 C 0.137 3.863 11 N -0.530 5.530 12 C 0.489 3.511 13 O -0.482 6.482 14 C -0.128 4.128 15 H 0.139 0.861 16 C 0.026 3.974 17 C -0.529 4.529 18 H 0.028 0.972 19 C 0.002 3.998 20 N -0.953 5.953 21 Si 0.948 3.052 22 H -0.283 1.283 23 H -0.281 1.281 24 H -0.216 1.216 25 H 0.122 0.878 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.174 0.826 29 H 0.191 0.809 30 H 0.179 0.821 31 H 0.008 0.992 32 H 0.077 0.923 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.356 22.884 4.494 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.044 4.044 3 N -0.060 5.060 4 N -0.242 5.242 5 C 0.130 3.870 6 C -0.183 4.183 7 C -0.054 4.054 8 C -0.144 4.144 9 Cl -0.010 7.010 10 C -0.021 4.021 11 N -0.245 5.245 12 C 0.277 3.723 13 O -0.349 6.349 14 C -0.152 4.152 15 H 0.157 0.843 16 C -0.013 4.013 17 C -0.567 4.567 18 H 0.046 0.954 19 C -0.194 4.194 20 N -0.593 5.593 21 Si 0.770 3.230 22 H -0.209 1.209 23 H -0.207 1.207 24 H -0.138 1.138 25 H 0.140 0.860 26 H 0.127 0.873 27 H 0.123 0.877 28 H 0.192 0.808 29 H 0.209 0.791 30 H 0.196 0.804 31 H 0.026 0.974 32 H 0.095 0.905 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.250 22.572 4.435 23.595 hybrid contribution 0.829 -0.779 -0.599 1.286 sum -4.421 21.793 3.836 22.565 Atomic orbital electron populations 1.20786 0.79794 1.06477 1.06554 1.26395 0.99440 0.88550 0.90016 1.74674 0.85377 1.26435 1.19534 1.47410 1.03764 1.05125 1.67949 1.18431 0.85328 0.87844 0.95412 1.21791 1.03053 0.89030 1.04422 1.21780 0.88641 1.02428 0.92504 1.21984 0.91237 0.91643 1.09572 1.98375 1.44967 1.60704 1.96953 1.22798 0.97899 0.87797 0.93614 1.67241 0.99282 1.40691 1.17287 1.22195 0.92649 0.82427 0.75016 1.90760 1.33141 1.65870 1.45100 1.21848 0.90403 0.97747 1.05222 0.84328 1.19259 0.99352 0.92555 0.90109 1.21287 1.24440 1.04858 1.06114 0.95382 1.26064 0.97288 0.94353 1.01708 1.70099 1.42232 1.12481 1.34482 0.85721 0.80672 0.78369 0.78272 1.20920 1.20688 1.13792 0.85987 0.87301 0.87719 0.80831 0.79138 0.80429 0.97378 0.90468 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.49 71.24 0.75 -0.32 16 2 C 0.15 3.92 6.93 46.83 0.32 4.25 16 3 N -0.25 -7.55 11.15 -40.84 -0.46 -8.01 16 4 N -0.43 -16.50 3.72 -306.63 -1.14 -17.64 16 5 C 0.36 12.65 7.51 132.86 1.00 13.65 16 6 C -0.16 -3.94 9.65 22.49 0.22 -3.72 16 7 C -0.03 -0.52 9.97 22.46 0.22 -0.30 16 8 C -0.11 -2.53 6.34 22.43 0.14 -2.39 16 9 Cl -0.04 -0.69 28.99 -2.72 -0.08 -0.77 16 10 C 0.14 3.99 10.98 84.67 0.93 4.92 16 11 N -0.53 -20.46 8.92 -192.82 -1.72 -22.18 16 12 C 0.49 22.67 7.53 87.89 0.66 23.33 16 13 O -0.48 -27.37 15.79 -3.05 -0.05 -27.41 16 14 C -0.13 -4.89 2.98 -11.74 -0.03 -4.93 16 15 H 0.14 5.07 8.14 -2.38 -0.02 5.05 16 16 C 0.03 1.13 3.56 29.85 0.11 1.23 16 17 C -0.53 -30.88 8.94 25.60 0.23 -30.65 16 18 H 0.03 1.89 7.48 -2.91 -0.02 1.87 16 19 C 0.00 0.14 5.47 84.66 0.46 0.61 16 20 N -0.95 -61.73 13.96 21.45 0.30 -61.43 16 21 Si 0.95 42.84 27.47 68.60 1.88 44.72 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.22 -8.04 6.54 99.48 0.65 -7.39 16 25 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.10 1.33 7.50 -2.39 -0.02 1.31 16 28 H 0.17 3.47 7.60 -2.91 -0.02 3.45 16 29 H 0.19 2.00 8.06 -2.91 -0.02 1.97 16 30 H 0.18 4.48 8.06 -2.91 -0.02 4.45 16 31 H 0.01 0.36 7.57 -2.39 -0.02 0.34 16 32 H 0.08 2.85 6.56 -2.39 -0.02 2.83 16 33 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -84.78 306.65 4.84 -79.94 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 1.09 Total: 7.11 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 5.01 Total: 5.69 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -3.02 Total: -109.26 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.05 Total: -27.41 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.72 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -84.78 4.84 -79.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600814225.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.121 kcal (2) G-P(sol) polarization free energy of solvation -84.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds