Wall clock time and date at job start Tue Mar 31 2020 07:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99485 * 2 1 4 4 H 1.48500 * 109.47037 * 239.99858 * 3 2 1 5 5 H 1.48500 * 109.47589 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47651 * 120.00009 * 3 2 1 7 7 C 1.37869 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00268 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47361 * 180.02562 * 9 7 2 11 11 N 1.39748 * 119.73105 * 269.99963 * 10 9 7 12 12 C 1.29225 * 121.56670 * 195.17734 * 11 10 9 13 13 C 1.47434 * 119.42120 * 181.25097 * 12 11 10 14 14 C 1.39683 * 119.74319 * 0.27887 * 13 12 11 15 15 C 1.38292 * 119.05918 * 180.25373 * 14 13 12 16 16 C 1.38946 * 118.52613 * 359.47556 * 15 14 13 17 17 Cl 1.73599 * 120.30444 * 180.29809 * 16 15 14 18 18 C 1.38437 * 119.39689 * 0.28384 * 16 15 14 19 19 N 1.31695 * 120.90665 * 359.97016 * 18 16 15 20 20 C 1.50581 * 121.15788 * 1.53347 * 12 11 10 21 21 C 1.53312 * 109.53003 * 326.25661 * 20 12 11 22 22 C 1.34658 * 119.73251 * 89.97605 * 10 9 7 23 23 O 1.21300 * 120.18958 * 4.20861 * 22 10 9 24 24 H 0.96994 * 120.00711 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47513 * 60.00297 * 9 7 2 26 26 H 1.08998 * 109.47116 * 300.00015 * 9 7 2 27 27 H 1.07999 * 120.47287 * 0.02562 * 14 13 12 28 28 H 1.08002 * 120.74077 * 179.75933 * 15 14 13 29 29 H 1.07997 * 119.54503 * 179.97438 * 18 16 15 30 30 H 1.09004 * 109.43385 * 86.46117 * 20 12 11 31 31 H 1.08998 * 109.43447 * 206.31826 * 20 12 11 32 32 H 1.09002 * 109.71216 * 287.41885 * 21 20 12 33 33 H 1.09003 * 109.44643 * 167.15662 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6967 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0027 11 7 2.6537 -4.1404 -1.2104 12 6 3.2522 -5.2841 -1.2698 13 6 3.7327 -5.7834 -2.5712 14 6 3.5416 -5.0147 -3.7217 15 6 3.9931 -5.4990 -4.9358 16 6 4.6322 -6.7325 -4.9619 17 17 5.2242 -7.3808 -6.4595 18 6 4.7927 -7.4397 -3.7826 19 7 4.3491 -6.9588 -2.6397 20 6 3.4621 -6.1188 -0.0341 21 6 3.6895 -5.2004 1.1722 22 6 2.6377 -4.1188 1.1725 23 8 2.1860 -3.7074 2.2204 24 1 -0.4851 0.8399 -0.0004 25 1 0.6242 -2.5575 -0.8880 26 1 0.6249 -2.5563 0.8919 27 1 3.0449 -4.0574 -3.6645 28 1 3.8563 -4.9290 -5.8429 29 1 5.2887 -8.3989 -3.8002 30 1 2.5824 -6.7388 0.1384 31 1 4.3341 -6.7581 -0.1721 32 1 4.6785 -4.7467 1.1076 33 1 3.6139 -5.7824 2.0908 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601932076.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:12 Heat of formation + Delta-G solvation = 34.419472 kcal Electronic energy + Delta-G solvation = -20214.607092 eV Core-core repulsion = 16881.134825 eV Total energy + Delta-G solvation = -3333.472267 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.58324 -39.72680 -37.09033 -36.61644 -34.25144 -32.82320 -32.43338 -31.89970 -30.04709 -27.56521 -25.23124 -24.22557 -23.54764 -22.63167 -21.41955 -18.08663 -17.24546 -16.94620 -16.70020 -16.40887 -16.00452 -15.36851 -15.09468 -14.58397 -14.39215 -13.94721 -13.71274 -13.48756 -13.06532 -12.71734 -12.58639 -12.30158 -11.98520 -11.85157 -11.53872 -11.51868 -11.19861 -10.87449 -10.74431 -10.44264 -10.21177 -10.08615 -9.82324 -9.78413 -9.13821 -8.96968 -8.51503 -7.73875 -6.13029 -4.18099 0.33729 0.95674 1.73694 2.02830 2.82881 3.18089 3.29181 3.32883 3.37046 3.64609 3.89731 4.30205 4.38490 4.45839 4.60040 4.76910 4.80880 4.97388 5.21270 5.22986 5.28238 5.49607 5.52014 5.69789 5.80629 5.85706 5.96651 6.27696 6.48191 6.99136 7.17362 7.29740 7.56951 7.81256 8.06317 8.35132 8.68198 8.85226 9.45931 10.95536 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.017797 B = 0.003942 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.915528 B = 7100.396427 C = 8296.298980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.261 3.739 10 N -0.426 5.426 11 N -0.194 5.194 12 C 0.099 3.901 13 C 0.194 3.806 14 C -0.121 4.121 15 C -0.066 4.066 16 C -0.091 4.091 17 Cl -0.059 7.059 18 C 0.118 3.882 19 N -0.456 5.456 20 C -0.100 4.100 21 C -0.146 4.146 22 C 0.487 3.513 23 O -0.513 6.513 24 H 0.266 0.734 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.161 0.839 28 H 0.149 0.851 29 H 0.168 0.832 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.763 -15.932 -10.367 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.077 0.923 9 C 0.143 3.857 10 N -0.247 5.247 11 N -0.004 5.004 12 C -0.091 4.091 13 C 0.056 3.944 14 C -0.143 4.143 15 C -0.092 4.092 16 C -0.121 4.121 17 Cl -0.030 7.030 18 C -0.042 4.042 19 N -0.166 5.166 20 C -0.140 4.140 21 C -0.187 4.187 22 C 0.274 3.726 23 O -0.385 6.385 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.178 0.822 28 H 0.166 0.834 29 H 0.185 0.815 30 H 0.107 0.893 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.098 -15.252 -9.443 20.114 hybrid contribution 0.677 0.872 -0.467 1.199 sum 9.775 -14.380 -9.910 20.013 Atomic orbital electron populations 1.69910 1.05987 1.27448 1.49863 1.24897 0.94929 0.99237 0.94784 0.86482 0.79484 0.82314 0.78728 1.20093 1.21012 1.20127 1.21275 0.93393 0.90185 1.51947 0.92325 1.19545 0.86277 0.80396 0.99437 1.49609 1.43258 1.32860 0.98945 1.74012 1.05745 1.09605 1.11028 1.22256 1.01107 0.92434 0.93270 1.19068 0.94086 0.90025 0.91201 1.22408 0.98861 1.01997 0.91009 1.21550 0.94727 0.93557 0.99368 1.22203 1.03699 0.97126 0.89097 1.98381 1.86821 1.85882 1.31966 1.22664 0.96527 0.99490 0.85548 1.67712 1.09412 1.12323 1.27178 1.20885 1.05054 0.97746 0.90282 1.21933 0.99426 0.96663 1.00656 1.21086 0.83806 0.83453 0.84279 1.90721 1.56908 1.60479 1.30413 0.92419 0.93575 0.92431 0.82155 0.83354 0.81528 0.89319 0.87656 0.88275 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.53 -15.05 9.38 -34.45 -0.32 -15.37 16 8 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 9 C 0.26 6.90 5.48 -5.19 -0.03 6.87 16 10 N -0.43 -9.56 3.46 -61.44 -0.21 -9.77 16 11 N -0.19 -3.69 10.36 35.00 0.36 -3.33 16 12 C 0.10 1.52 6.78 -80.00 -0.54 0.98 16 13 C 0.19 2.56 6.73 -83.12 -0.56 2.00 16 14 C -0.12 -1.47 9.60 -39.02 -0.37 -1.84 16 15 C -0.07 -0.65 9.96 -39.30 -0.39 -1.04 16 16 C -0.09 -0.86 6.35 -39.25 -0.25 -1.11 16 17 Cl -0.06 -0.49 28.98 -51.86 -1.50 -1.99 16 18 C 0.12 1.12 10.97 -17.54 -0.19 0.93 16 19 N -0.46 -5.35 9.33 -9.88 -0.09 -5.44 16 20 C -0.10 -1.30 5.84 -27.78 -0.16 -1.46 16 21 C -0.15 -2.17 6.23 -27.64 -0.17 -2.34 16 22 C 0.49 10.31 7.53 -10.96 -0.08 10.22 16 23 O -0.51 -12.78 16.65 5.54 0.09 -12.69 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.06 1.66 7.35 -51.93 -0.38 1.28 16 27 H 0.16 2.06 7.52 -52.49 -0.39 1.66 16 28 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.17 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.11 1.15 7.45 -51.93 -0.39 0.76 16 32 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 310.36 15.07 4.68 4.68 Total: -1.00 -32.17 310.36 -7.38 -39.55 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -3.24 Total: -1.81 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -3.18 Total: -0.44 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.79 Total: -43.99 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.17 -7.38 -39.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932076.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.974 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds