Wall clock time and date at job start Tue Mar 31 2020 07:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99485 * 2 1 4 4 H 1.48500 * 109.47037 * 239.99858 * 3 2 1 5 5 H 1.48500 * 109.47589 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47651 * 120.00009 * 3 2 1 7 7 C 1.37869 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00268 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47361 * 180.02562 * 9 7 2 11 11 N 1.39748 * 119.73105 * 269.99963 * 10 9 7 12 12 C 1.29225 * 121.56670 * 195.17734 * 11 10 9 13 13 C 1.47434 * 119.42120 * 181.25097 * 12 11 10 14 14 C 1.39683 * 119.74319 * 0.27887 * 13 12 11 15 15 C 1.38292 * 119.05918 * 180.25373 * 14 13 12 16 16 C 1.38946 * 118.52613 * 359.47556 * 15 14 13 17 17 Cl 1.73599 * 120.30444 * 180.29809 * 16 15 14 18 18 C 1.38437 * 119.39689 * 0.28384 * 16 15 14 19 19 N 1.31695 * 120.90665 * 359.97016 * 18 16 15 20 20 C 1.50581 * 121.15788 * 1.53347 * 12 11 10 21 21 C 1.53312 * 109.53003 * 326.25661 * 20 12 11 22 22 C 1.34658 * 119.73251 * 89.97605 * 10 9 7 23 23 O 1.21300 * 120.18958 * 4.20861 * 22 10 9 24 24 H 0.96994 * 120.00711 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47513 * 60.00297 * 9 7 2 26 26 H 1.08998 * 109.47116 * 300.00015 * 9 7 2 27 27 H 1.07999 * 120.47287 * 0.02562 * 14 13 12 28 28 H 1.08002 * 120.74077 * 179.75933 * 15 14 13 29 29 H 1.07997 * 119.54503 * 179.97438 * 18 16 15 30 30 H 1.09004 * 109.43385 * 86.46117 * 20 12 11 31 31 H 1.08998 * 109.43447 * 206.31826 * 20 12 11 32 32 H 1.09002 * 109.71216 * 287.41885 * 21 20 12 33 33 H 1.09003 * 109.44643 * 167.15662 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6967 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0027 11 7 2.6537 -4.1404 -1.2104 12 6 3.2522 -5.2841 -1.2698 13 6 3.7327 -5.7834 -2.5712 14 6 3.5416 -5.0147 -3.7217 15 6 3.9931 -5.4990 -4.9358 16 6 4.6322 -6.7325 -4.9619 17 17 5.2242 -7.3808 -6.4595 18 6 4.7927 -7.4397 -3.7826 19 7 4.3491 -6.9588 -2.6397 20 6 3.4621 -6.1188 -0.0341 21 6 3.6895 -5.2004 1.1722 22 6 2.6377 -4.1188 1.1725 23 8 2.1860 -3.7074 2.2204 24 1 -0.4851 0.8399 -0.0004 25 1 0.6242 -2.5575 -0.8880 26 1 0.6249 -2.5563 0.8919 27 1 3.0449 -4.0574 -3.6645 28 1 3.8563 -4.9290 -5.8429 29 1 5.2887 -8.3989 -3.8002 30 1 2.5824 -6.7388 0.1384 31 1 4.3341 -6.7581 -0.1721 32 1 4.6785 -4.7467 1.1076 33 1 3.6139 -5.7824 2.0908 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601932076.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:11 Heat of formation + Delta-G solvation = 13.367990 kcal Electronic energy + Delta-G solvation = -20215.519953 eV Core-core repulsion = 16881.134825 eV Total energy + Delta-G solvation = -3334.385127 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.72877 -41.02017 -38.36306 -37.59959 -35.98806 -34.38874 -33.64364 -33.04356 -31.36226 -29.36793 -26.69578 -25.30855 -24.87447 -24.07284 -22.75597 -19.24712 -18.84959 -18.58771 -17.95014 -17.63589 -17.27824 -16.78688 -16.61868 -15.93084 -15.58593 -15.23382 -15.08862 -14.48873 -14.40139 -14.27588 -13.67352 -13.59223 -13.55288 -13.16677 -13.04412 -12.87504 -12.68357 -12.40878 -12.28697 -12.25227 -11.72890 -11.66989 -10.93223 -10.82650 -10.70203 -10.45826 -10.24681 -9.27649 -8.28945 -6.44324 -0.65246 0.12224 0.82220 0.96428 1.31214 1.37109 1.39417 1.48405 1.71210 2.35508 2.67388 2.70319 3.01611 3.34233 3.43955 3.66308 3.71185 3.86705 4.00266 4.12177 4.18233 4.37268 4.70738 4.74568 4.78994 4.86663 4.91805 4.97576 5.01432 5.27310 5.37134 5.44856 5.63904 5.91303 6.58325 6.64263 6.76826 7.19652 7.27038 8.79071 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.017797 B = 0.003942 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.915528 B = 7100.396427 C = 8296.298980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.279 3.721 10 N -0.444 5.444 11 N -0.243 5.243 12 C 0.135 3.865 13 C 0.166 3.834 14 C -0.127 4.127 15 C -0.062 4.062 16 C -0.080 4.080 17 Cl -0.040 7.040 18 C 0.121 3.879 19 N -0.454 5.454 20 C -0.097 4.097 21 C -0.131 4.131 22 C 0.472 3.528 23 O -0.570 6.570 24 H 0.271 0.729 25 H 0.028 0.972 26 H 0.019 0.981 27 H 0.145 0.855 28 H 0.170 0.830 29 H 0.201 0.799 30 H 0.102 0.898 31 H 0.140 0.860 32 H 0.114 0.886 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.371 -17.806 -12.207 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.069 0.931 9 C 0.160 3.840 10 N -0.262 5.262 11 N -0.052 5.052 12 C -0.055 4.055 13 C 0.029 3.971 14 C -0.149 4.149 15 C -0.088 4.088 16 C -0.110 4.110 17 Cl -0.011 7.011 18 C -0.039 4.039 19 N -0.165 5.165 20 C -0.136 4.136 21 C -0.171 4.171 22 C 0.262 3.738 23 O -0.447 6.447 24 H 0.080 0.920 25 H 0.046 0.954 26 H 0.037 0.963 27 H 0.163 0.837 28 H 0.187 0.813 29 H 0.217 0.783 30 H 0.120 0.880 31 H 0.158 0.842 32 H 0.133 0.867 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.721 -17.153 -11.323 23.661 hybrid contribution -0.033 1.187 -0.155 1.197 sum 11.688 -15.966 -11.478 22.875 Atomic orbital electron populations 1.70027 1.07522 1.28630 1.50243 1.25839 0.95876 1.02992 0.93972 0.85400 0.78323 0.77670 0.79025 1.18729 1.19783 1.19998 1.21504 0.93117 0.91531 1.52444 0.93124 1.18858 0.86743 0.81850 0.96576 1.49262 1.43467 1.32649 1.00853 1.74086 1.09869 1.12412 1.08819 1.22948 0.96347 0.90874 0.95372 1.18889 0.96449 0.91410 0.90315 1.22354 0.99162 1.01555 0.91873 1.21758 0.93891 0.93944 0.99207 1.22318 1.02216 0.96581 0.89929 1.98401 1.86405 1.85522 1.30819 1.23212 0.95605 1.00351 0.84771 1.67687 1.09108 1.11306 1.28353 1.21045 1.07152 0.97295 0.88136 1.21981 0.97369 0.94945 1.02809 1.22264 0.84349 0.84164 0.83047 1.90673 1.59184 1.62827 1.32007 0.92020 0.95414 0.96301 0.83704 0.81258 0.78258 0.87951 0.84245 0.86747 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.29 21.44 0.28 -55.97 16 2 C 0.01 0.75 5.46 84.65 0.46 1.22 16 3 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.55 -32.71 9.38 25.60 0.24 -32.47 16 8 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 9 C 0.28 15.92 5.48 85.63 0.47 16.39 16 10 N -0.44 -21.04 3.46 -466.73 -1.61 -22.65 16 11 N -0.24 -9.60 10.36 -43.18 -0.45 -10.04 16 12 C 0.13 4.02 6.78 45.33 0.31 4.33 16 13 C 0.17 4.10 6.73 41.76 0.28 4.38 16 14 C -0.13 -2.96 9.60 22.63 0.22 -2.74 16 15 C -0.06 -1.07 9.96 22.45 0.22 -0.84 16 16 C -0.08 -1.23 6.35 22.49 0.14 -1.08 16 17 Cl -0.04 -0.52 28.98 -2.72 -0.08 -0.59 16 18 C 0.12 1.82 10.97 84.76 0.93 2.75 16 19 N -0.45 -9.13 9.33 -185.17 -1.73 -10.86 16 20 C -0.10 -2.29 5.84 29.91 0.17 -2.11 16 21 C -0.13 -3.70 6.23 30.01 0.19 -3.52 16 22 C 0.47 20.77 7.53 87.73 0.66 21.43 16 23 O -0.57 -30.13 16.65 -3.09 -0.05 -30.18 16 24 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 25 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.02 1.20 7.35 -2.39 -0.02 1.19 16 27 H 0.15 3.83 7.52 -2.91 -0.02 3.81 16 28 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.20 1.67 8.06 -2.91 -0.02 1.64 16 30 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.14 2.45 7.45 -2.39 -0.02 2.43 16 32 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -74.80 310.36 3.83 -70.97 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 1.15 Total: 4.28 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 4.30 Total: 7.72 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -3.50 Total: -99.53 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.05 Total: -30.18 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.59 kcal Total: -74.80 3.83 -70.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932076.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.336 kcal (2) G-P(sol) polarization free energy of solvation -74.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds