Wall clock time and date at job start Tue Mar 31 2020 07:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.27576 * 126.41846 * 2 1 4 4 N 1.39146 * 113.16356 * 180.22105 * 3 2 1 5 5 C 1.39575 * 124.43621 * 179.76935 * 4 3 2 6 6 N 1.32374 * 119.69863 * 180.02562 * 5 4 3 7 7 C 1.31902 * 121.64761 * 180.31416 * 6 5 4 8 8 C 1.38130 * 120.86923 * 359.66331 * 7 6 5 9 9 C 1.38793 * 119.32136 * 0.02562 * 8 7 6 10 10 C 1.38504 * 118.48210 * 0.02562 * 9 8 7 11 11 Cl 1.73599 * 120.45779 * 179.97438 * 10 9 8 12 12 C 1.34954 * 111.12527 * 359.51154 * 4 3 2 13 13 O 1.21282 * 127.50171 * 180.26373 * 12 4 3 14 14 C 1.51445 * 126.41978 * 179.71290 * 2 1 3 15 15 H 1.09008 * 110.73524 * 298.54100 * 14 2 1 16 16 C 1.52996 * 110.60735 * 61.44339 * 14 2 1 17 17 C 1.50701 * 109.47174 * 180.58479 * 16 14 2 18 18 H 1.07996 * 119.99916 * 0.02562 * 17 16 14 19 19 C 1.37879 * 119.99762 * 180.02562 * 17 16 14 20 20 N 1.31514 * 119.99544 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00290 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46952 * 90.00107 * 21 19 17 23 23 H 1.48497 * 109.47060 * 210.00342 * 21 19 17 24 24 H 1.48504 * 109.46943 * 330.00138 * 21 19 17 25 25 H 1.09005 * 109.46944 * 270.29095 * 1 2 3 26 26 H 1.09000 * 109.47522 * 30.28605 * 1 2 3 27 27 H 1.09001 * 109.47150 * 150.29346 * 1 2 3 28 28 H 1.08000 * 119.56511 * 179.68349 * 7 6 5 29 29 H 1.08002 * 120.34185 * 180.02562 * 8 7 6 30 30 H 1.07998 * 120.75693 * 179.97438 * 9 8 7 31 31 H 1.08997 * 109.47230 * 300.58621 * 16 14 2 32 32 H 1.09001 * 109.46900 * 60.58509 * 16 14 2 33 33 H 0.97007 * 119.99870 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7076 -0.0049 5 6 4.6509 1.6471 -0.0106 6 7 5.9099 1.2382 -0.0155 7 6 6.9150 2.0924 -0.0148 8 6 6.6872 3.4548 -0.0159 9 6 5.3816 3.9256 -0.0171 10 6 4.3473 3.0045 -0.0167 11 17 2.6949 3.5368 -0.0176 12 6 3.8036 -0.6292 0.0022 13 8 4.8578 -1.2288 0.0049 14 6 2.4061 -1.2186 0.0061 15 1 2.2432 -1.8139 0.9047 16 6 2.1749 -2.0647 -1.2475 17 6 3.0706 -3.2760 -1.2083 18 1 3.7377 -3.4274 -0.3726 19 6 3.0384 -4.1908 -2.2394 20 7 3.8205 -5.2476 -2.2054 21 14 1.8841 -3.9292 -3.6845 22 1 2.5774 -3.1420 -4.7356 23 1 1.4785 -5.2458 -4.2387 24 1 0.6787 -3.1917 -3.2279 25 1 -0.3633 0.0052 1.0277 26 1 -0.3634 0.8874 -0.5183 27 1 -0.3633 -0.8926 -0.5093 28 1 7.9294 1.7217 -0.0138 29 1 7.5166 4.1466 -0.0157 30 1 5.1769 4.9860 -0.0175 31 1 1.1334 -2.3840 -1.2834 32 1 2.4039 -1.4719 -2.1331 33 1 3.7976 -5.8914 -2.9306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601933048.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:04 Heat of formation + Delta-G solvation = 46.507985 kcal Electronic energy + Delta-G solvation = -20959.385290 eV Core-core repulsion = 17626.437221 eV Total energy + Delta-G solvation = -3332.948069 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.77461 -40.99977 -38.64719 -37.47107 -36.09263 -34.78234 -33.43267 -32.65047 -31.54368 -29.06803 -28.34099 -25.40735 -24.48834 -23.53174 -21.60603 -21.00255 -19.47874 -18.62405 -17.72941 -17.58516 -17.22768 -16.47335 -16.23017 -16.05969 -15.74232 -15.28231 -14.71721 -14.56471 -14.44741 -14.32202 -13.91605 -13.69333 -13.36911 -13.18572 -13.00533 -12.98761 -12.86398 -12.45635 -12.04583 -11.85069 -11.68458 -11.28855 -11.07840 -10.88696 -10.79290 -10.61212 -10.21762 -9.18123 -8.27852 -6.34130 -0.24562 0.06077 0.58580 0.95929 1.11413 1.34377 1.37251 1.47838 1.58579 2.34789 2.65993 2.73332 3.06264 3.06754 3.44565 3.50115 3.85858 3.90087 4.04879 4.13231 4.35725 4.48349 4.64567 4.81413 4.88143 4.92907 4.99440 5.05595 5.11345 5.14123 5.41643 5.51577 5.58911 6.24659 6.36438 6.66481 6.77039 6.97076 7.27998 8.89754 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.005525 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.944548 B = 5066.599346 C = 5977.808236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.132 3.868 3 N -0.239 5.239 4 N -0.430 5.430 5 C 0.357 3.643 6 N -0.534 5.534 7 C 0.120 3.880 8 C -0.165 4.165 9 C -0.039 4.039 10 C -0.116 4.116 11 Cl -0.021 7.021 12 C 0.491 3.509 13 O -0.483 6.483 14 C -0.126 4.126 15 H 0.138 0.862 16 C 0.026 3.974 17 C -0.528 4.528 18 H 0.029 0.971 19 C 0.003 3.997 20 N -0.952 5.952 21 Si 0.947 3.053 22 H -0.283 1.283 23 H -0.280 1.280 24 H -0.219 1.219 25 H 0.120 0.880 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.189 0.811 29 H 0.196 0.804 30 H 0.188 0.812 31 H 0.075 0.925 32 H 0.007 0.993 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 23.089 4.632 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.060 4.060 3 N -0.045 5.045 4 N -0.241 5.241 5 C 0.129 3.871 6 N -0.250 5.250 7 C -0.038 4.038 8 C -0.186 4.186 9 C -0.065 4.065 10 C -0.148 4.148 11 Cl 0.008 6.992 12 C 0.279 3.721 13 O -0.350 6.350 14 C -0.149 4.149 15 H 0.156 0.844 16 C -0.012 4.012 17 C -0.566 4.566 18 H 0.048 0.952 19 C -0.193 4.193 20 N -0.593 5.593 21 Si 0.769 3.231 22 H -0.209 1.209 23 H -0.206 1.206 24 H -0.141 1.141 25 H 0.138 0.862 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.205 0.795 29 H 0.213 0.787 30 H 0.205 0.795 31 H 0.093 0.907 32 H 0.025 0.975 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.596 22.734 4.561 23.638 hybrid contribution 0.337 -0.828 -0.603 1.078 sum -4.259 21.905 3.958 22.664 Atomic orbital electron populations 1.20718 0.80205 1.06158 1.06331 1.26506 0.99549 0.88970 0.90946 1.75375 0.85345 1.25194 1.18590 1.47420 1.03845 1.05179 1.67696 1.18149 0.86178 0.85847 0.96946 1.67271 0.98514 1.41988 1.17202 1.23300 0.97448 0.90466 0.92562 1.22570 0.98196 0.96306 1.01523 1.21938 0.90355 1.01086 0.93154 1.21605 0.90105 0.91618 1.11496 1.98363 1.15152 1.88966 1.96708 1.22091 0.92626 0.82349 0.75076 1.90742 1.32872 1.66126 1.45305 1.21810 0.90466 0.97571 1.05096 0.84424 1.19244 0.99183 0.92632 0.90162 1.21294 1.22126 1.06228 1.06969 0.95213 1.26046 0.97504 0.94373 1.01426 1.70100 1.41191 1.13551 1.34416 0.85729 0.80734 0.78249 0.78385 1.20884 1.20552 1.14066 0.86209 0.87899 0.87688 0.79463 0.78718 0.79476 0.90677 0.97465 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.49 71.23 0.75 -0.53 16 2 C 0.13 3.92 6.93 46.83 0.32 4.24 16 3 N -0.24 -7.95 8.58 -40.84 -0.35 -8.30 16 4 N -0.43 -17.63 3.71 -307.02 -1.14 -18.77 16 5 C 0.36 13.44 7.51 132.87 1.00 14.44 16 6 N -0.53 -20.68 8.91 -192.82 -1.72 -22.40 16 7 C 0.12 3.09 11.18 84.66 0.95 4.03 16 8 C -0.17 -2.80 10.11 22.38 0.23 -2.57 16 9 C -0.04 -0.74 9.97 22.47 0.22 -0.51 16 10 C -0.12 -3.27 6.36 22.54 0.14 -3.13 16 11 Cl -0.02 -0.53 25.77 -2.72 -0.07 -0.60 16 12 C 0.49 23.64 7.49 87.94 0.66 24.30 16 13 O -0.48 -28.04 15.58 -3.04 -0.05 -28.09 16 14 C -0.13 -5.04 3.01 -11.74 -0.04 -5.08 16 15 H 0.14 5.28 8.14 -2.38 -0.02 5.26 16 16 C 0.03 1.19 3.57 29.85 0.11 1.30 16 17 C -0.53 -31.44 8.91 25.60 0.23 -31.22 16 18 H 0.03 2.04 7.30 -2.91 -0.02 2.02 16 19 C 0.00 0.18 5.47 84.66 0.46 0.64 16 20 N -0.95 -62.32 13.96 21.45 0.30 -62.02 16 21 Si 0.95 43.74 27.47 68.60 1.88 45.62 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.22 -8.44 6.54 99.48 0.65 -7.79 16 25 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.10 1.60 7.56 -2.39 -0.02 1.58 16 28 H 0.19 3.69 8.06 -2.91 -0.02 3.67 16 29 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 30 H 0.19 1.97 8.06 -2.91 -0.02 1.94 16 31 H 0.08 2.91 6.64 -2.39 -0.02 2.90 16 32 H 0.01 0.33 7.57 -2.39 -0.02 0.32 16 33 H 0.27 16.14 8.31 -92.70 -0.77 15.36 16 Total: -1.00 -88.77 301.71 4.98 -83.79 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.09 Total: 4.85 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 5.03 Total: 5.92 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -2.91 Total: -111.49 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.05 Total: -28.09 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.07 Total: -0.60 kcal Total: -88.77 4.98 -83.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601933048.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.296 kcal (2) G-P(sol) polarization free energy of solvation -88.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds