Wall clock time and date at job start Tue Mar 31 2020 07:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.27574 * 126.41945 * 2 1 4 4 N 1.39147 * 113.16421 * 180.02562 * 3 2 1 5 5 C 1.39575 * 124.43337 * 179.97438 * 4 3 2 6 6 N 1.32373 * 119.69528 * 180.02562 * 5 4 3 7 7 C 1.31899 * 121.64413 * 179.97438 * 6 5 4 8 8 C 1.38129 * 120.87483 * 359.97438 * 7 6 5 9 9 C 1.38783 * 119.31857 * 0.02562 * 8 7 6 10 10 C 1.38506 * 118.48282 * 359.75079 * 9 8 7 11 11 Cl 1.73599 * 120.46034 * 180.24232 * 10 9 8 12 12 C 1.34949 * 111.12471 * 0.26096 * 4 3 2 13 13 O 1.21288 * 127.50151 * 179.71908 * 12 4 3 14 14 C 1.51449 * 126.41822 * 180.02562 * 2 1 3 15 15 H 1.09004 * 110.60382 * 61.29173 * 14 2 1 16 16 C 1.52994 * 110.60763 * 298.48478 * 14 2 1 17 17 C 1.50696 * 109.47232 * 174.99905 * 16 14 2 18 18 H 1.08006 * 119.99858 * 359.97438 * 17 16 14 19 19 C 1.37873 * 120.00548 * 180.02562 * 17 16 14 20 20 N 1.31516 * 119.99769 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00450 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47485 * 89.99271 * 21 19 17 23 23 H 1.48499 * 109.46920 * 209.99715 * 21 19 17 24 24 H 1.48499 * 109.46913 * 329.99519 * 21 19 17 25 25 H 1.09003 * 109.47332 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47399 * 119.98428 * 1 2 3 27 27 H 1.09012 * 109.47306 * 239.97879 * 1 2 3 28 28 H 1.08005 * 119.56034 * 179.97438 * 7 6 5 29 29 H 1.07999 * 120.34015 * 180.02562 * 8 7 6 30 30 H 1.08008 * 120.75917 * 179.97438 * 9 8 7 31 31 H 1.09001 * 109.47487 * 294.99529 * 16 14 2 32 32 H 1.09002 * 109.47764 * 54.99889 * 16 14 2 33 33 H 0.97002 * 119.99813 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7075 -0.0006 5 6 4.6509 1.6471 -0.0012 6 7 5.9099 1.2382 -0.0022 7 6 6.9149 2.0924 -0.0034 8 6 6.6872 3.4548 -0.0041 9 6 5.3817 3.9256 -0.0030 10 6 4.3473 3.0045 -0.0066 11 17 2.6949 3.5367 -0.0118 12 6 3.8035 -0.6292 -0.0067 13 8 4.8577 -1.2289 -0.0135 14 6 2.4060 -1.2187 -0.0005 15 1 2.2394 -1.8180 -0.8957 16 6 2.1761 -2.0581 1.2578 17 6 2.9907 -3.3231 1.1736 18 1 3.6102 -3.5099 0.3087 19 6 2.9445 -4.2425 2.1999 20 7 2.1899 -4.0153 3.2528 21 14 3.9548 -5.8103 2.0959 22 1 5.2928 -5.5778 2.6967 23 1 3.2619 -6.8957 2.8354 24 1 4.1130 -6.2036 0.6727 25 1 -0.3634 1.0277 0.0005 26 1 -0.3634 -0.5136 -0.8901 27 1 -0.3634 -0.5142 0.8899 28 1 7.9293 1.7216 -0.0038 29 1 7.5166 4.1465 -0.0054 30 1 5.1769 4.9861 -0.0031 31 1 2.4803 -1.4879 2.1355 32 1 1.1190 -2.3114 1.3376 33 1 2.1576 -4.6620 3.9751 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601933049.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:06 Heat of formation + Delta-G solvation = 43.491945 kcal Electronic energy + Delta-G solvation = -20890.647337 eV Core-core repulsion = 17557.568482 eV Total energy + Delta-G solvation = -3333.078855 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.74972 -40.98531 -38.62102 -37.46653 -36.08484 -34.82562 -33.40897 -32.31726 -31.53763 -29.03004 -28.04538 -25.50705 -24.52030 -23.77541 -21.64859 -20.98307 -19.33225 -18.42898 -17.71676 -17.46932 -17.23681 -16.58287 -16.32507 -16.00522 -15.71192 -15.23186 -14.69068 -14.49802 -14.31815 -14.26789 -13.72030 -13.57212 -13.30897 -13.18133 -13.00903 -12.98423 -12.86460 -12.62588 -12.29788 -11.91836 -11.53421 -11.32145 -11.05949 -10.86209 -10.62568 -10.60433 -10.21161 -9.17080 -8.25311 -6.33083 -0.24057 0.06424 0.59452 0.97463 1.12551 1.35367 1.38360 1.48698 1.58876 2.38191 2.66686 2.75609 3.09827 3.11319 3.44738 3.52773 3.86899 3.91421 4.05663 4.24188 4.36796 4.54846 4.66318 4.80928 4.88052 4.93296 5.04515 5.10945 5.29057 5.31749 5.44431 5.55161 5.71716 6.10387 6.37291 6.66568 6.77375 6.96662 7.34797 8.85882 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.005280 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.289781 B = 5301.336268 C = 6419.808904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.131 3.869 3 N -0.241 5.241 4 N -0.430 5.430 5 C 0.357 3.643 6 N -0.532 5.532 7 C 0.121 3.879 8 C -0.166 4.166 9 C -0.039 4.039 10 C -0.118 4.118 11 Cl -0.023 7.023 12 C 0.495 3.505 13 O -0.484 6.484 14 C -0.131 4.131 15 H 0.140 0.860 16 C 0.068 3.932 17 C -0.533 4.533 18 H 0.051 0.949 19 C 0.011 3.989 20 N -0.925 5.925 21 Si 0.955 3.045 22 H -0.286 1.286 23 H -0.271 1.271 24 H -0.265 1.265 25 H 0.101 0.899 26 H 0.119 0.881 27 H 0.098 0.902 28 H 0.192 0.808 29 H 0.196 0.804 30 H 0.187 0.813 31 H -0.018 1.018 32 H 0.048 0.952 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.592 18.562 -8.147 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.061 4.061 3 N -0.047 5.047 4 N -0.241 5.241 5 C 0.129 3.871 6 N -0.247 5.247 7 C -0.037 4.037 8 C -0.186 4.186 9 C -0.066 4.066 10 C -0.150 4.150 11 Cl 0.006 6.994 12 C 0.283 3.717 13 O -0.352 6.352 14 C -0.155 4.155 15 H 0.157 0.843 16 C 0.030 3.970 17 C -0.571 4.571 18 H 0.070 0.930 19 C -0.187 4.187 20 N -0.565 5.565 21 Si 0.780 3.220 22 H -0.212 1.212 23 H -0.196 1.196 24 H -0.190 1.190 25 H 0.120 0.880 26 H 0.137 0.863 27 H 0.117 0.883 28 H 0.208 0.792 29 H 0.213 0.787 30 H 0.204 0.796 31 H 0.000 1.000 32 H 0.066 0.934 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.327 18.285 -7.998 20.001 hybrid contribution 0.561 -1.160 0.351 1.335 sum 1.888 17.125 -7.646 18.849 Atomic orbital electron populations 1.20652 0.80681 1.05896 1.05964 1.26465 0.99505 0.89430 0.90695 1.75394 0.85443 1.25086 1.18802 1.47392 1.03823 1.05288 1.67576 1.18148 0.86227 0.85800 0.96923 1.67270 0.98335 1.41891 1.17224 1.23330 0.97500 0.90403 0.92423 1.22573 0.98084 0.96430 1.01551 1.21934 0.90413 1.01040 0.93180 1.21625 0.90034 0.91746 1.11614 1.98365 1.15363 1.88999 1.96717 1.22027 0.92506 0.82343 0.74827 1.90683 1.32564 1.66170 1.45782 1.21992 0.90396 0.97631 1.05479 0.84267 1.18636 0.98324 0.92204 0.87834 1.21440 1.26639 1.04229 1.04814 0.93035 1.25722 0.96474 1.01644 0.94891 1.70032 1.40506 1.37379 1.08587 0.85599 0.78439 0.79310 0.78639 1.21213 1.19584 1.18973 0.88021 0.86304 0.88315 0.79166 0.78671 0.79574 0.99965 0.93373 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.47 71.23 0.75 -0.81 16 2 C 0.13 4.33 6.93 46.83 0.32 4.65 16 3 N -0.24 -8.62 8.58 -40.84 -0.35 -8.97 16 4 N -0.43 -18.14 3.71 -307.03 -1.14 -19.28 16 5 C 0.36 13.64 7.51 132.86 1.00 14.64 16 6 N -0.53 -20.33 8.91 -192.82 -1.72 -22.05 16 7 C 0.12 3.05 11.17 84.66 0.95 4.00 16 8 C -0.17 -2.80 10.11 22.37 0.23 -2.57 16 9 C -0.04 -0.77 9.97 22.46 0.22 -0.54 16 10 C -0.12 -3.44 6.36 22.54 0.14 -3.30 16 11 Cl -0.02 -0.63 25.77 -2.72 -0.07 -0.70 16 12 C 0.49 23.97 7.53 87.94 0.66 24.63 16 13 O -0.48 -27.01 16.01 -3.06 -0.05 -27.06 16 14 C -0.13 -5.56 2.95 -11.74 -0.03 -5.60 16 15 H 0.14 5.46 8.14 -2.38 -0.02 5.44 16 16 C 0.07 3.50 4.49 29.85 0.13 3.63 16 17 C -0.53 -31.03 8.46 25.60 0.22 -30.81 16 18 H 0.05 3.07 7.44 -2.91 -0.02 3.05 16 19 C 0.01 0.66 5.46 84.65 0.46 1.12 16 20 N -0.92 -55.56 13.29 21.45 0.28 -55.27 16 21 Si 0.95 46.39 29.54 68.60 2.03 48.41 16 22 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 24 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 25 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.10 2.14 8.04 -2.38 -0.02 2.12 16 28 H 0.19 3.53 8.06 -2.91 -0.02 3.51 16 29 H 0.20 1.30 8.06 -2.91 -0.02 1.27 16 30 H 0.19 2.09 8.06 -2.91 -0.02 2.06 16 31 H -0.02 -1.06 8.12 -2.39 -0.02 -1.08 16 32 H 0.05 2.37 8.02 -2.39 -0.02 2.35 16 33 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -81.36 307.06 5.17 -76.18 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: 1.14 Total: -0.30 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 5.05 Total: 9.03 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -2.92 Total: -105.57 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.05 Total: -27.06 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.07 Total: -0.70 kcal Total: -81.36 5.17 -76.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601933049.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.675 kcal (2) G-P(sol) polarization free energy of solvation -81.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds